The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
83
|
sequence length |
275
|
structure length |
275
|
Chain Sequence |
LTITPLSPALGAQISGVDISRDISAEERDAIEQALLQHQVLFLRDQPINPEQQARFAARFGDLHIHPIYPNVPDTPQVLVLDTAVTDVRDNAVWHTDVTFLPTPALGAVLSAKQLPAYGGDTLWASGIAAFEALSAPLREMLDGLTATHDFTKSFPLERFGTTPQDLARWEATRRNNPPLSHPVVRTHPVSGRKALFVNEGFTTRINELSELESDALLRLLFAHATRPEFSIRWRWQENDVAFWDNRVTQHFAVDDYRPNRRVMHRATILGDAPF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Biochemical and structural characterization of the Fe(II)/alpha-ketoglutarate dependent taurine dioxygenase from Pseudomonas putida KT2440
rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Pseudomonas putida kt2440
|
| molecule keywords |
Alpha-ketoglutarate-dependent taurine dioxygenase
|
| total genus |
83
|
| structure length |
275
|
| sequence length |
275
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
1.14.11.17: Taurine dioxygenase. |
| pdb deposition date | 2010-12-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02668 | TauD | Taurine catabolism dioxygenase TauD, TfdA family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 4-Layer Sandwich | Double-stranded beta-helix | Clavaminate synthase-like |
#chains in the Genus database with same CATH superfamily 4M26 A; 4J5I A; 1OS7 A; 1GVG A; 2R6S A; 1JR7 A; 2WBQ A; 1GY9 A; 1DS0 A; 1OIK A; 4M23 A; 1DRT A; 5J92 A; 3V17 A; 4C5W A; 4Y0E A; 4M2F A; 4BHG A; 4BGM A; 1GQW A; 2OG5 A; 2Q4A A; 1VZ4 A; 4CVY A; 3N6W A; 1DS1 A; 4M2E A; 3V15 A; 1OII A; 4BHI A; 1VZ5 A; 3SWT A; 4CWD A; 1OTJ A; 4M2C A; 4BG1 A; 4M27 A; 5HSX A; 1OIJ B; 3EAT X; 3R1J A; 1DRY A; 1Y0Z A; 1OIJ A; 4NE0 A; 4YLM X; 2WBP A; 2OG6 A; 2WBO A; 4M2I A; 5KEU A; 3O2G A; 1NX8 A; 3MS5 A; 1OIH A; 2OG7 A; 1OIJ C; 1NX4 A; 3PVJ A; 4BHF A; 4FFA A; 4BGK A; 4M25 A; 4C8R A; 4OJ8 A; 4M2G A; #chains in the Genus database with same CATH topology 4M26 A; 1PG6 A; 1OS7 A; 1GVG A; 2R6S A; 4J5I A; 1JR7 A; 2WBQ A; 1GY9 A; 1DS0 A; 1OIK A; 4M23 A; 1DRT A; 5J92 A; 3V17 A; 4C5W A; 4Y0E A; 4M2F A; 4BHG A; 4BGM A; 1GQW A; 2OG5 A; 2Q4A A; 1VZ4 A; 4CVY A; 3N6W A; 1DS1 A; 4M2E A; 3V15 A; 1OII A; 4BHI A; 1VZ5 A; 3SWT A; 4CWD A; 1OTJ A; 4M2C A; 4BG1 A; 4M27 A; 1YOX A; 5HSX A; 1OIJ B; 3EAT X; 3R1J A; 1DRY A; 1Y0Z A; 1OIJ A; 4NE0 A; 4YLM X; 2WBP A; 2OG6 A; 2WBO A; 4M2I A; 5KEU A; 3O2G A; 1NX8 A; 3MS5 A; 1OIH A; 2OG7 A; 1OIJ C; 1NX4 A; 3PVJ A; 4BHF A; 4FFA A; 4BGK A; 4M25 A; 4C8R A; 4OJ8 A; 4M2G A; #chains in the Genus database with same CATH homology 1H2M A; 1JR7 A; 5J92 A; 4C8R A; 4B7K A; 1DRT A; 3V17 A; 4BHI A; 2ILM A; 1VZ5 A; 1OTJ A; 4M2C A; 1OIJ B; 3EAT X; 1Y0Z A; 2WBO A; 4M2I A; 2OG7 A; 2CGN A; 4FFA A; 4OJ8 A; 1OS7 A; 2R6S A; 4NR1 A; 1OIK A; 4Y0E A; 4M2F A; 4BHG A; 1GQW A; 2OG5 A; 5JWP A; 3N6W A; 3KCY A; 3SWT A; 1MZE A; 4M27 A; 5HSX A; 4B7E A; 1MZF A; 3MS5 A; 1OIH A; 1OIJ C; 1GVG A; 2YDE A; 4C5W A; 4BIO A; 2Q4A A; 1VZ4 A; 1DS1 A; 1H2K A; 3P3N A; 4CWD A; 1YCI A; 1H2L A; 2WA3 A; 2XUM A; 1OIJ A; 4NE0 A; 4Z2W A; 2Y0I A; 2OG6 A; 5KEU A; 3P3P A; 2W0X A; 3PVJ A; 1NX4 A; 4BGK A; 2YC0 A; 4M26 A; 3KCX A; 1IZ3 A; 4J5I A; 4JAA A; 2WBQ A; 1GY9 A; 1DS0 A; 4M23 A; 2WA4 A; 4AI8 A; 1H2N A; 4BGM A; 3OD4 A; 4CVY A; 4M2E A; 3V15 A; 4Z1V A; 1OII A; 4BG1 A; 3D8C A; 3R1J A; 1DRY A; 4YLM X; 2WBP A; 3O2G A; 1NX8 A; 2CGO A; 4BHF A; 4M25 A; 4M2G A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
