3TAWA

Crystal structure of a putative glycoside hydrolase (bdi_3141) from parabacteroides distasonis atcc 8503 at 1.70 a resolution
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
349
structure length
349
Chain Sequence
SETAWCLDGFERPTGVNPVIKPLPTKFYCPMREDSVAWEESDTFNPAATIYDGKIVVMYRAEDNSAQGIGSRTSRLGYATSTDGIHFERDTKPAFYPAKDNQAENECPGGTEDPRIAMTEDGTYVLLYTQWNRKVPRLAVATSKDLKHWTKFGPAFEKAYNGKFKDEATKSASLVTTLKGDKQVIAKVNGKYFMYWGEKNVYAATSDNLIDWDPLLDENGELLKLFSPRSGYFDSQLTECGPPAILTKDGIVLLYNGKNEPGEKGDTAYPANSYCAGQALFDVNNPTKLIGRLDKPFLQPTDDFEKSGQYPAGTVFVEGLVYYRNKWYLYYGCADSFVAVAVSDKQLNF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Hypothetical glycoside hydrolase
publication title Crystal structure of a Hypothetical glycoside hydrolase (BDI_3141) from Parabacteroides distasonis ATCC 8503 at 1.70 A resolution
rcsb
source organism Parabacteroides distasonis
total genus 101
structure length 349
sequence length 349
ec nomenclature
pdb deposition date 2011-08-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04041 Glyco_hydro_130 beta-1,4-mannooligosaccharide phosphorylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 3tawA00
3KSTA 3BYKA 4AK7A 3OM6A 4U6DA 4KC8A 4UDJA 3R67A 5FKBA 5GLOA 5AYDA 4O8NA 5B6TA 3ZXLA 3VSSA 4UDIA 4U6BA 3QZ4A 3BYLA 1VKDA 3C7FA 3LEMA 4N1IA 1GYDB 2AEZA 3TAWA 3U75A 1Y7BA 2EXIA 1WL7A 3WATA 1W2TA 3D61A 4EQVA 3LF7A 5FKCA 5FK8A 2AEYA 3LIGA 3RWKX 3WMYA 3WPYA 4KMIA 3BYNA 3D60A 3VT0A 4COTA 3NQHA 4N4BA 1Y9MA 5FLWA 5AYCA 5AYEA 5GLRA 3AKIA 3D5ZA 3C7OA 3PIGA 5FMDA 2EXKA 4FFFA 4O8OA 5GLKA 5GLMA 3AKHA 3QEEA 3WASA 3WN1A 3OM2A 3ZXKA 2OXBA 2VDTA 5JOZA 4PVIA 1OYGA 3LDRA 3VT2A 5JOXA 3R4ZA 5A7VA 4UDKA 3C7HA 3K1UA 2ADEA 3LFIA 3OM4A 4UDKE 3VSRA 2X8FA 3ZXJA 2B4WA 5GLLA 3D5YA 1GYHA 5JOWA 4ONZA 2EXJA 3OM5A 2YFSA 2QQVA 3LV4A 3KF3A 2AC1A 3CU9A 5FMBA 3LDKA 4FFIA 2QQUA 5GLPA 3BYJA 5AY9A 3U14A 4O8PA 5FK7A 5ANNA 3C2UA 3UGGA 4FFHA 3R4YA 3VT1A 5C0PA 4UDGA 4N2RA 3WMZA 4QQSA 5B6SA 3P2NA 1GYEB 3VSZA 2X8TA 1YI7A 4NOVA 4KCAA 5FIXA 4AK6A 3LIHA 1YIFA 5FMCA 3WN2A 2EXHA 4N2ZA 2QQWA 1ST8A 3AKGA 5A8DA 5GLNA 2X8SA 3UGHA 3WPUA 4PVAA 3WPVA 5JOYA 1Y4WA 3C7GA 3SC7X 4KCBA 2YFRA 3C7EA 5A7VB 3VSFA 4AK5A 1PT2A 2ADDA 3QC2A 5A8CA 2YFTA 3OM7A 3WN0A 3PIJA 3AKFA 3UGFA 1UYPA 3QEFA 3WPZA 2XQRA 4MLGA 1W18A 3KF5A 3QEDA 1UV4A 1Y9GA 4D47A 4KC7A 3WAUA 1YRZA 5GLQA 4FFGA
chains in the Genus database with same CATH superfamily
3KSTA 3BYKA 4AK7A 3OM6A 4U6DA 4KC8A 4UDJA 3R67A 5FKBA 5GLOA 5AYDA 4O8NA 5B6TA 3ZXLA 3VSSA 4UDIA 4U6BA 3QZ4A 3BYLA 1VKDA 3C7FA 3LEMA 4N1IA 1GYDB 2AEZA 3TAWA 3U75A 1Y7BA 2EXIA 1WL7A 3WATA 1W2TA 3D61A 4EQVA 3LF7A 5FKCA 5FK8A 2AEYA 3LIGA 3RWKX 3WMYA 3WPYA 4KMIA 3BYNA 3D60A 3VT0A 4COTA 3NQHA 4N4BA 1Y9MA 5FLWA 5AYCA 5AYEA 5GLRA 3AKIA 3D5ZA 3C7OA 3PIGA 5FMDA 2EXKA 4FFFA 4O8OA 5GLKA 1TL2A 3AKHA 3QEEA 5GLMA 3WASA 3WN1A 3OM2A 3ZXKA 2OXBA 2VDTA 5JOZA 4PVIA 1OYGA 3LDRA 3VT2A 5JOXA 3R4ZA 5A7VA 4UDKA 3C7HA 3K1UA 2ADEA 3LFIA 3OM4A 4UDKE 3VSRA 2X8FA 3ZXJA 2B4WA 5GLLA 3D5YA 1GYHA 5JOWA 4ONZA 2EXJA 3OM5A 2YFSA 2QQVA 3LV4A 3KF3A 2AC1A 3CU9A 5FMBA 3LDKA 4FFIA 2QQUA 5GLPA 3BYJA 5AY9A 3U14A 4O8PA 5FK7A 5ANNA 3C2UA 3UGGA 4FFHA 3R4YA 3VT1A 5C0PA 4UDGA 4N2RA 3WMZA 4QQSA 5B6SA 3P2NA 1GYEB 3VSZA 2X8TA 1YI7A 4NOVA 4KCAA 5FIXA 4AK6A 3LIHA 1YIFA 5FMCA 3WN2A 2EXHA 4N2ZA 2QQWA 1ST8A 3AKGA 5A8DA 5GLNA 2X8SA 3UGHA 3WPUA 4PVAA 3WPVA 5JOYA 1Y4WA 3C7GA 3SC7X 4KCBA 2YFRA 3C7EA 5A7VB 3VSFA 4AK5A 1PT2A 2ADDA 3QC2A 5A8CA 2YFTA 3OM7A 3WN0A 3PIJA 3AKFA 3UGFA 1UYPA 3QEFA 3WPZA 2XQRA 4MLGA 1W18A 3KF5A 3QEDA 1UV4A 1Y9GA 4D47A 5C2MA 4KC7A 3WAUA 1YRZA 5GLQA 4FFGA
chains in the Genus database with same CATH topology
3KSTA 3BYKA 4AK7A 3OM6A 4U6DA 4KC8A 4UDJA 3R67A 5FKBA 5GLOA 5AYDA 4O8NA 5B6TA 3ZXLA 3VSSA 4UDIA 4U6BA 3QZ4A 3BYLA 1VKDA 3C7FA 3LEMA 4N1IA 1GYDB 2AEZA 3TAWA 3U75A 1Y7BA 2EXIA 1WL7A 3WATA 1W2TA 3D61A 4EQVA 3LF7A 5FKCA 5FK8A 2AEYA 3LIGA 3RWKX 3WMYA 3WPYA 4KMIA 3BYNA 3D60A 3VT0A 4COTA 3NQHA 4N4BA 1Y9MA 5FLWA 5AYCA 5AYEA 5GLRA 3AKIA 3D5ZA 3C7OA 3PIGA 5FMDA 2EXKA 4FFFA 4O8OA 5GLKA 5GLMA 3AKHA 3QEEA 3WASA 3WN1A 3OM2A 3ZXKA 2OXBA 2VDTA 5JOZA 4PVIA 1OYGA 3LDRA 3VT2A 5JOXA 3R4ZA 5A7VA 4UDKA 3C7HA 3K1UA 2ADEA 3LFIA 3OM4A 4UDKE 3VSRA 2X8FA 3ZXJA 2B4WA 5GLLA 3D5YA 1GYHA 5JOWA 4ONZA 2EXJA 3OM5A 2YFSA 2QQVA 3LV4A 3KF3A 2AC1A 3CU9A 5FMBA 3LDKA 4FFIA 2QQUA 5GLPA 3BYJA 5AY9A 3U14A 4O8PA 5FK7A 5ANNA 3C2UA 3UGGA 4FFHA 3R4YA 3VT1A 5C0PA 4UDGA 4N2RA 3WMZA 4QQSA 5B6SA 3P2NA 1GYEB 3VSZA 2X8TA 1YI7A 4NOVA 4KCAA 5FIXA 4AK6A 3LIHA 1YIFA 5FMCA 3WN2A 2EXHA 4N2ZA 2QQWA 1ST8A 3AKGA 5A8DA 5GLNA 2X8SA 3UGHA 3WPUA 4PVAA 3WPVA 5JOYA 1Y4WA 3C7GA 3SC7X 4KCBA 2YFRA 3C7EA 5A7VB 3VSFA 4AK5A 1PT2A 2ADDA 3QC2A 5A8CA 2YFTA 3OM7A 3WN0A 3PIJA 3AKFA 3UGFA 1UYPA 3QEFA 3WPZA 2XQRA 4MLGA 1W18A 3KF5A 3QEDA 1UV4A 1Y9GA 4D47A 4KC7A 3WAUA 1YRZA 5GLQA 4FFGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KST A;  3BYK A;  4AK7 A;  3OM6 A;  4U6D A;  4KC8 A;  4UDJ A;  3R67 A;  5FKB A;  5GLO A;  5AYD A;  4O8N A;  5B6T A;  3ZXL A;  3VSS A;  4UDI A;  4U6B A;  3QZ4 A;  3BYL A;  1VKD A;  3C7F A;  3LEM A;  4N1I A;  1GYD B;  2AEZ A;  3TAW A;  3U75 A;  1Y7B A;  2EXI A;  1WL7 A;  3WAT A;  1W2T A;  3D61 A;  4EQV A;  3LF7 A;  5FKC A;  5FK8 A;  2AEY A;  3LIG A;  3RWK X;  3WMY A;  3WPY A;  4KMI A;  3BYN A;  3D60 A;  3VT0 A;  4COT A;  3NQH A;  4N4B A;  1Y9M A;  5FLW A;  5AYC A;  5AYE A;  5GLR A;  3AKI A;  3D5Z A;  3C7O A;  3PIG A;  5FMD A;  2EXK A;  4FFF A;  4O8O A;  5GLK A;  5GLM A;  3AKH A;  3QEE A;  3WAS A;  3WN1 A;  3OM2 A;  3ZXK A;  2OXB A;  2VDT A;  5JOZ A;  4PVI A;  1OYG A;  3LDR A;  3VT2 A;  5JOX A;  3R4Z A;  5A7V A;  4UDK A;  3C7H A;  3K1U A;  2ADE A;  3LFI A;  3OM4 A;  4UDK E;  3VSR A;  2X8F A;  3ZXJ A;  2B4W A;  5GLL A;  3D5Y A;  1GYH A;  5JOW A;  4ONZ A;  2EXJ A;  3OM5 A;  2YFS A;  2QQV A;  3LV4 A;  3KF3 A;  2AC1 A;  3CU9 A;  5FMB A;  3LDK A;  4FFI A;  2QQU A;  5GLP A;  3BYJ A;  5AY9 A;  3U14 A;  4O8P A;  5FK7 A;  5ANN A;  3C2U A;  3UGG A;  4FFH A;  3R4Y A;  3VT1 A;  5C0P A;  4UDG A;  4N2R A;  3WMZ A;  4QQS A;  5B6S A;  3P2N A;  1GYE B;  3VSZ A;  2X8T A;  1YI7 A;  4NOV A;  4KCA A;  5FIX A;  4AK6 A;  3LIH A;  1YIF A;  5FMC A;  3WN2 A;  2EXH A;  4N2Z A;  2QQW A;  1ST8 A;  3AKG A;  5A8D A;  5GLN A;  2X8S A;  3UGH A;  3WPU A;  4PVA A;  3WPV A;  5JOY A;  1Y4W A;  3C7G A;  3SC7 X;  4KCB A;  2YFR A;  3C7E A;  5A7V B;  3VSF A;  4AK5 A;  1PT2 A;  2ADD A;  3QC2 A;  5A8C A;  2YFT A;  3OM7 A;  3WN0 A;  3PIJ A;  3AKF A;  3UGF A;  1UYP A;  3QEF A;  3WPZ A;  2XQR A;  4MLG A;  1W18 A;  3KF5 A;  3QED A;  1UV4 A;  1Y9G A;  4D47 A;  4KC7 A;  3WAU A;  1YRZ A;  5GLQ A;  4FFG A; 
#chains in the Genus database with same CATH topology
 3KST A;  3BYK A;  4AK7 A;  3OM6 A;  4U6D A;  4KC8 A;  4UDJ A;  3R67 A;  5FKB A;  5GLO A;  5AYD A;  4O8N A;  5B6T A;  3ZXL A;  3VSS A;  4UDI A;  4U6B A;  3QZ4 A;  3BYL A;  1VKD A;  3C7F A;  3LEM A;  4N1I A;  1GYD B;  2AEZ A;  3TAW A;  3U75 A;  1Y7B A;  2EXI A;  1WL7 A;  3WAT A;  1W2T A;  3D61 A;  4EQV A;  3LF7 A;  5FKC A;  5FK8 A;  2AEY A;  3LIG A;  3RWK X;  3WMY A;  3WPY A;  4KMI A;  3BYN A;  3D60 A;  3VT0 A;  4COT A;  3NQH A;  4N4B A;  1Y9M A;  5FLW A;  5AYC A;  5AYE A;  5GLR A;  3AKI A;  3D5Z A;  3C7O A;  3PIG A;  5FMD A;  2EXK A;  4FFF A;  4O8O A;  5GLK A;  1TL2 A;  3AKH A;  3QEE A;  5GLM A;  3WAS A;  3WN1 A;  3OM2 A;  3ZXK A;  2OXB A;  2VDT A;  5JOZ A;  4PVI A;  1OYG A;  3LDR A;  3VT2 A;  5JOX A;  3R4Z A;  5A7V A;  4UDK A;  3C7H A;  3K1U A;  2ADE A;  3LFI A;  3OM4 A;  4UDK E;  3VSR A;  2X8F A;  3ZXJ A;  2B4W A;  5GLL A;  3D5Y A;  1GYH A;  5JOW A;  4ONZ A;  2EXJ A;  3OM5 A;  2YFS A;  2QQV A;  3LV4 A;  3KF3 A;  2AC1 A;  3CU9 A;  5FMB A;  3LDK A;  4FFI A;  2QQU A;  5GLP A;  3BYJ A;  5AY9 A;  3U14 A;  4O8P A;  5FK7 A;  5ANN A;  3C2U A;  3UGG A;  4FFH A;  3R4Y A;  3VT1 A;  5C0P A;  4UDG A;  4N2R A;  3WMZ A;  4QQS A;  5B6S A;  3P2N A;  1GYE B;  3VSZ A;  2X8T A;  1YI7 A;  4NOV A;  4KCA A;  5FIX A;  4AK6 A;  3LIH A;  1YIF A;  5FMC A;  3WN2 A;  2EXH A;  4N2Z A;  2QQW A;  1ST8 A;  3AKG A;  5A8D A;  5GLN A;  2X8S A;  3UGH A;  3WPU A;  4PVA A;  3WPV A;  5JOY A;  1Y4W A;  3C7G A;  3SC7 X;  4KCB A;  2YFR A;  3C7E A;  5A7V B;  3VSF A;  4AK5 A;  1PT2 A;  2ADD A;  3QC2 A;  5A8C A;  2YFT A;  3OM7 A;  3WN0 A;  3PIJ A;  3AKF A;  3UGF A;  1UYP A;  3QEF A;  3WPZ A;  2XQR A;  4MLG A;  1W18 A;  3KF5 A;  3QED A;  1UV4 A;  1Y9G A;  4D47 A;  5C2M A;  4KC7 A;  3WAU A;  1YRZ A;  5GLQ A;  4FFG A; 
#chains in the Genus database with same CATH homology
 3KST A;  3BYK A;  4AK7 A;  3OM6 A;  4U6D A;  4KC8 A;  4UDJ A;  3R67 A;  5FKB A;  5GLO A;  5AYD A;  4O8N A;  5B6T A;  3ZXL A;  3VSS A;  4UDI A;  4U6B A;  3QZ4 A;  3BYL A;  1VKD A;  3C7F A;  3LEM A;  4N1I A;  1GYD B;  2AEZ A;  3TAW A;  3U75 A;  1Y7B A;  2EXI A;  1WL7 A;  3WAT A;  1W2T A;  3D61 A;  4EQV A;  3LF7 A;  5FKC A;  5FK8 A;  2AEY A;  3LIG A;  3RWK X;  3WMY A;  3WPY A;  4KMI A;  3BYN A;  3D60 A;  3VT0 A;  4COT A;  3NQH A;  4N4B A;  1Y9M A;  5FLW A;  5AYC A;  5AYE A;  5GLR A;  3AKI A;  3D5Z A;  3C7O A;  3PIG A;  5FMD A;  2EXK A;  4FFF A;  4O8O A;  5GLK A;  5GLM A;  3AKH A;  3QEE A;  3WAS A;  3WN1 A;  3OM2 A;  3ZXK A;  2OXB A;  2VDT A;  5JOZ A;  4PVI A;  1OYG A;  3LDR A;  3VT2 A;  5JOX A;  3R4Z A;  5A7V A;  4UDK A;  3C7H A;  3K1U A;  2ADE A;  3LFI A;  3OM4 A;  4UDK E;  3VSR A;  2X8F A;  3ZXJ A;  2B4W A;  5GLL A;  3D5Y A;  1GYH A;  5JOW A;  4ONZ A;  2EXJ A;  3OM5 A;  2YFS A;  2QQV A;  3LV4 A;  3KF3 A;  2AC1 A;  3CU9 A;  5FMB A;  3LDK A;  4FFI A;  2QQU A;  5GLP A;  3BYJ A;  5AY9 A;  3U14 A;  4O8P A;  5FK7 A;  5ANN A;  3C2U A;  3UGG A;  4FFH A;  3R4Y A;  3VT1 A;  5C0P A;  4UDG A;  4N2R A;  3WMZ A;  4QQS A;  5B6S A;  3P2N A;  1GYE B;  3VSZ A;  2X8T A;  1YI7 A;  4NOV A;  4KCA A;  5FIX A;  4AK6 A;  3LIH A;  1YIF A;  5FMC A;  3WN2 A;  2EXH A;  4N2Z A;  2QQW A;  1ST8 A;  3AKG A;  5A8D A;  5GLN A;  2X8S A;  3UGH A;  3WPU A;  4PVA A;  3WPV A;  5JOY A;  1Y4W A;  3C7G A;  3SC7 X;  4KCB A;  2YFR A;  3C7E A;  5A7V B;  3VSF A;  4AK5 A;  1PT2 A;  2ADD A;  3QC2 A;  5A8C A;  2YFT A;  3OM7 A;  3WN0 A;  3PIJ A;  3AKF A;  3UGF A;  1UYP A;  3QEF A;  3WPZ A;  2XQR A;  4MLG A;  1W18 A;  3KF5 A;  3QED A;  1UV4 A;  1Y9G A;  4D47 A;  4KC7 A;  3WAU A;  1YRZ A;  5GLQ A;  4FFG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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