4UDKA

Crystal structure of b-1,4-mannopyranosyl-chitobiose phosphorylase at 1.76 angstrom from unknown human gut bacteria (uhgb_mp) in complex with n-acetyl-d-glucosamine, beta-d-mannopyranose and inorganic phosphate
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
320
structure length
319
Chain Sequence
b'IIPWEERPAGCKDVLWRSVANPIIPRDLLPTSNSIFNSAVVPFGDGFAGVFRCDDTSRRMRLHVGFSKDAINWNIKEEPLKFQCDDEEIGTWVYGYPRVCFIEDRYYVTWCNGYHGPTIGVAYTFDFETFHQLENAFIPFNRNGVLFPRKINGRFAMLSRPSDNGHTPFGDIFYSESPDMEFWGRHRHVMSPAAFEVSAWQCTKIGAGPIPVETPEGWLLIYHGVLHSCNGYVYSFGSALLDLDEPWKVKFRSGPYLLAPREPYECMGDVPNVCFPCAALHDNETGRIAIYYGCADTVTGLAFGYIPEIIEFTKRTSII'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UHGB_MP
publication title Structural Bases for N-Glycan Processing by Mannoside Phosphorylase.
pubmed doi rcsb
source organism Uncultured organism
molecule tags Transferase
total genus 79
structure length 319
sequence length 320
chains with identical sequence B, C, D, F
ec nomenclature ec 2.4.1.-:
pdb deposition date 2014-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04041 Glyco_hydro_130 beta-1,4-mannooligosaccharide phosphorylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 4udkA00
3AKIA 3BYKA 3VSSA 5FKCA 5FMDA 2VDTA 3D61A 2X8FA 2QQUA 3LDKA 1YRZA 2X8SA 3WN1A 4KC7A 4FFFA 1GYDB 3LIHA 5A7VB 5AYDA 3VT1A 3WASA 5B6TA 3VSZA 2EXJA 4O8OA 5GLRA 5C0PA 4KCAA 3NQHA 4KCBA 5FK8A 2ADDA 4N2ZA 4FFIA 1OYGA 3QEDA 1W2TA 4UDKE 5FK7A 5FKBA 5JOWA 2YFRA 2AC1A 4EQVA 3KF3A 4UDIA 3OM7A 5A8DA 3PIJA 4AK5A 4O8NA 2AEZA 3LEMA 4NOVA 2XQRA 3WAUA 3WPZA 3U75A 4KC8A 3UGGA 2QQWA 3C7EA 3AKFA 3VSFA 3BYJA 4QQSA 3KF5A 3R4ZA 3WMZA 3LV4A 5FLWA 1GYEB 3QC2A 3D60A 1VKDA 3BYLA 3OM4A 3OM2A 3R67A 3WN2A 3QEFA 1Y9GA 4KMIA 1YIFA 3LFIA 4COTA 3C7OA 2OXBA 3WMYA 3LDRA 5A8CA 3QZ4A 2EXIA 3C2UA 4AK6A 3KSTA 5ANNA 4FFGA 4UDGA 5GLMA 5AYEA 1WL7A 3WPVA 5GLQA 5AYCA 3ZXJA 1GYHA 5A7VA 3LIGA 3C7FA 3AKHA 5FMBA 4N2RA 5AY9A 1Y4WA 3QEEA 3C7HA 3WPYA 1UYPA 2B4WA 5FMCA 4PVAA 3VT0A 3C7GA 4PVIA 3VSRA 1Y7BA 3D5ZA 3VT2A 4AK7A 5B6SA 4N1IA 1UV4A 3K1UA 3SC7X 3D5YA 5FIXA 3WN0A 2X8TA 3WATA 1Y9MA 1YI7A 2YFTA 5GLKA 3OM6A 1W18A 3RWKX 3WPUA 2EXHA 4U6DA 4FFHA 2ADEA 5GLLA 3CU9A 5JOYA 2EXKA 3LF7A 3PIGA 5GLPA 5GLNA 3ZXKA 4O8PA 4N4BA 3OM5A 5JOXA 2AEYA 3U14A 3AKGA 3R4YA 3UGHA 1ST8A 5GLOA 4UDJA 3ZXLA 1PT2A 3UGFA 3BYNA 4U6BA 2YFSA 3TAWA 3P2NA 2QQVA 4D47A 4ONZA 4UDKA 4MLGA 5JOZA
chains in the Genus database with same CATH superfamily
3AKIA 3BYKA 3VSSA 5FKCA 5FMDA 2VDTA 3D61A 2X8FA 2QQUA 3LDKA 1YRZA 2X8SA 3WN1A 4KC7A 4FFFA 1GYDB 3LIHA 5A7VB 5AYDA 3VT1A 3WASA 5B6TA 3VSZA 2EXJA 4O8OA 5GLRA 5C0PA 4KCAA 3NQHA 4KCBA 5FK8A 2ADDA 4N2ZA 4FFIA 1OYGA 3QEDA 1W2TA 4UDKE 5FK7A 5FKBA 5C2MA 2YFRA 5JOWA 2AC1A 4EQVA 3KF3A 4UDIA 3OM7A 5A8DA 3PIJA 1TL2A 4AK5A 4O8NA 2AEZA 3LEMA 4NOVA 2XQRA 3WAUA 3WPZA 3U75A 4KC8A 3UGGA 2QQWA 3C7EA 3AKFA 3VSFA 3BYJA 4QQSA 3KF5A 3R4ZA 3WMZA 3LV4A 5FLWA 1GYEB 3QC2A 3D60A 1VKDA 3BYLA 3OM4A 3OM2A 3R67A 3WN2A 3QEFA 1Y9GA 4KMIA 1YIFA 3LFIA 4COTA 3C7OA 2OXBA 3WMYA 3LDRA 5A8CA 3QZ4A 2EXIA 3C2UA 4AK6A 3KSTA 5ANNA 4FFGA 4UDGA 5GLMA 5AYEA 1WL7A 3WPVA 5GLQA 5AYCA 3ZXJA 1GYHA 5A7VA 3LIGA 3C7FA 3AKHA 5FMBA 4N2RA 5AY9A 1Y4WA 3QEEA 3C7HA 3WPYA 1UYPA 2B4WA 5FMCA 4PVAA 3VT0A 3C7GA 4PVIA 3VSRA 1Y7BA 3D5ZA 3VT2A 4AK7A 5B6SA 4N1IA 1UV4A 3K1UA 3SC7X 3D5YA 5FIXA 3WN0A 2X8TA 3WATA 1Y9MA 1YI7A 2YFTA 5GLKA 3OM6A 1W18A 3RWKX 3WPUA 2EXHA 4U6DA 4FFHA 2ADEA 5GLLA 3CU9A 5JOYA 2EXKA 3LF7A 3PIGA 5GLPA 5GLNA 3ZXKA 4O8PA 4N4BA 3OM5A 5JOXA 2AEYA 3U14A 3AKGA 3R4YA 3UGHA 1ST8A 5GLOA 4UDJA 3ZXLA 1PT2A 3UGFA 3BYNA 4U6BA 2YFSA 3TAWA 3P2NA 2QQVA 4D47A 4ONZA 4UDKA 4MLGA 5JOZA
chains in the Genus database with same CATH topology
3AKIA 3BYKA 3VSSA 5FKCA 5FMDA 2VDTA 3D61A 2X8FA 2QQUA 3LDKA 1YRZA 2X8SA 3WN1A 4KC7A 4FFFA 1GYDB 3LIHA 5A7VB 5AYDA 3VT1A 3WASA 5B6TA 3VSZA 2EXJA 4O8OA 5GLRA 5C0PA 4KCAA 3NQHA 4KCBA 5FK8A 2ADDA 4N2ZA 4FFIA 1OYGA 3QEDA 1W2TA 4UDKE 5FK7A 5FKBA 5JOWA 2YFRA 2AC1A 4EQVA 3KF3A 4UDIA 3OM7A 5A8DA 3PIJA 4AK5A 4O8NA 2AEZA 3LEMA 4NOVA 2XQRA 3WAUA 3WPZA 3U75A 4KC8A 3UGGA 2QQWA 3C7EA 3AKFA 3VSFA 3BYJA 4QQSA 3KF5A 3R4ZA 3WMZA 3LV4A 5FLWA 1GYEB 3QC2A 3D60A 1VKDA 3BYLA 3OM4A 3OM2A 3R67A 3WN2A 3QEFA 1Y9GA 4KMIA 1YIFA 3LFIA 4COTA 3C7OA 2OXBA 3WMYA 3LDRA 5A8CA 3QZ4A 2EXIA 3C2UA 4AK6A 3KSTA 5ANNA 4FFGA 4UDGA 5GLMA 5AYEA 1WL7A 3WPVA 5GLQA 5AYCA 3ZXJA 1GYHA 5A7VA 3LIGA 3C7FA 3AKHA 5FMBA 4N2RA 5AY9A 1Y4WA 3QEEA 3C7HA 3WPYA 1UYPA 2B4WA 5FMCA 4PVAA 3VT0A 3C7GA 4PVIA 3VSRA 1Y7BA 3D5ZA 3VT2A 4AK7A 5B6SA 4N1IA 1UV4A 3K1UA 3SC7X 3D5YA 5FIXA 3WN0A 2X8TA 3WATA 1Y9MA 1YI7A 2YFTA 5GLKA 3OM6A 1W18A 3RWKX 3WPUA 2EXHA 4U6DA 4FFHA 2ADEA 5GLLA 3CU9A 5JOYA 2EXKA 3LF7A 3PIGA 5GLPA 5GLNA 3ZXKA 4O8PA 4N4BA 3OM5A 5JOXA 2AEYA 3U14A 3AKGA 3R4YA 3UGHA 1ST8A 5GLOA 4UDJA 3ZXLA 1PT2A 3UGFA 3BYNA 4U6BA 2YFSA 3TAWA 3P2NA 2QQVA 4D47A 4ONZA 4UDKA 4MLGA 5JOZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AKI A;  3BYK A;  3VSS A;  5FKC A;  5FMD A;  2VDT A;  3D61 A;  2X8F A;  2QQU A;  3LDK A;  1YRZ A;  2X8S A;  3WN1 A;  4KC7 A;  4FFF A;  1GYD B;  3LIH A;  5A7V B;  5AYD A;  3VT1 A;  3WAS A;  5B6T A;  3VSZ A;  2EXJ A;  4O8O A;  5GLR A;  5C0P A;  4KCA A;  3NQH A;  4KCB A;  5FK8 A;  2ADD A;  4N2Z A;  4FFI A;  1OYG A;  3QED A;  1W2T A;  4UDK E;  5FK7 A;  5FKB A;  5JOW A;  2YFR A;  2AC1 A;  4EQV A;  3KF3 A;  4UDI A;  3OM7 A;  5A8D A;  3PIJ A;  4AK5 A;  4O8N A;  2AEZ A;  3LEM A;  4NOV A;  2XQR A;  3WAU A;  3WPZ A;  3U75 A;  4KC8 A;  3UGG A;  2QQW A;  3C7E A;  3AKF A;  3VSF A;  3BYJ A;  4QQS A;  3KF5 A;  3R4Z A;  3WMZ A;  3LV4 A;  5FLW A;  1GYE B;  3QC2 A;  3D60 A;  1VKD A;  3BYL A;  3OM4 A;  3OM2 A;  3R67 A;  3WN2 A;  3QEF A;  1Y9G A;  4KMI A;  1YIF A;  3LFI A;  4COT A;  3C7O A;  2OXB A;  3WMY A;  3LDR A;  5A8C A;  3QZ4 A;  2EXI A;  3C2U A;  4AK6 A;  3KST A;  5ANN A;  4FFG A;  4UDG A;  5GLM A;  5AYE A;  1WL7 A;  3WPV A;  5GLQ A;  5AYC A;  3ZXJ A;  1GYH A;  5A7V A;  3LIG A;  3C7F A;  3AKH A;  5FMB A;  4N2R A;  5AY9 A;  1Y4W A;  3QEE A;  3C7H A;  3WPY A;  1UYP A;  2B4W A;  5FMC A;  4PVA A;  3VT0 A;  3C7G A;  4PVI A;  3VSR A;  1Y7B A;  3D5Z A;  3VT2 A;  4AK7 A;  5B6S A;  4N1I A;  1UV4 A;  3K1U A;  3SC7 X;  3D5Y A;  5FIX A;  3WN0 A;  2X8T A;  3WAT A;  1Y9M A;  1YI7 A;  2YFT A;  5GLK A;  3OM6 A;  1W18 A;  3RWK X;  3WPU A;  2EXH A;  4U6D A;  4FFH A;  2ADE A;  5GLL A;  3CU9 A;  5JOY A;  2EXK A;  3LF7 A;  3PIG A;  5GLP A;  5GLN A;  3ZXK A;  4O8P A;  4N4B A;  3OM5 A;  5JOX A;  2AEY A;  3U14 A;  3AKG A;  3R4Y A;  3UGH A;  1ST8 A;  5GLO A;  4UDJ A;  3ZXL A;  1PT2 A;  3UGF A;  3BYN A;  4U6B A;  2YFS A;  3TAW A;  3P2N A;  2QQV A;  4D47 A;  4ONZ A;  4UDK A;  4MLG A;  5JOZ A; 
#chains in the Genus database with same CATH topology
 3AKI A;  3BYK A;  3VSS A;  5FKC A;  5FMD A;  2VDT A;  3D61 A;  2X8F A;  2QQU A;  3LDK A;  1YRZ A;  2X8S A;  3WN1 A;  4KC7 A;  4FFF A;  1GYD B;  3LIH A;  5A7V B;  5AYD A;  3VT1 A;  3WAS A;  5B6T A;  3VSZ A;  2EXJ A;  4O8O A;  5GLR A;  5C0P A;  4KCA A;  3NQH A;  4KCB A;  5FK8 A;  2ADD A;  4N2Z A;  4FFI A;  1OYG A;  3QED A;  1W2T A;  4UDK E;  5FK7 A;  5FKB A;  5C2M A;  2YFR A;  5JOW A;  2AC1 A;  4EQV A;  3KF3 A;  4UDI A;  3OM7 A;  5A8D A;  3PIJ A;  1TL2 A;  4AK5 A;  4O8N A;  2AEZ A;  3LEM A;  4NOV A;  2XQR A;  3WAU A;  3WPZ A;  3U75 A;  4KC8 A;  3UGG A;  2QQW A;  3C7E A;  3AKF A;  3VSF A;  3BYJ A;  4QQS A;  3KF5 A;  3R4Z A;  3WMZ A;  3LV4 A;  5FLW A;  1GYE B;  3QC2 A;  3D60 A;  1VKD A;  3BYL A;  3OM4 A;  3OM2 A;  3R67 A;  3WN2 A;  3QEF A;  1Y9G A;  4KMI A;  1YIF A;  3LFI A;  4COT A;  3C7O A;  2OXB A;  3WMY A;  3LDR A;  5A8C A;  3QZ4 A;  2EXI A;  3C2U A;  4AK6 A;  3KST A;  5ANN A;  4FFG A;  4UDG A;  5GLM A;  5AYE A;  1WL7 A;  3WPV A;  5GLQ A;  5AYC A;  3ZXJ A;  1GYH A;  5A7V A;  3LIG A;  3C7F A;  3AKH A;  5FMB A;  4N2R A;  5AY9 A;  1Y4W A;  3QEE A;  3C7H A;  3WPY A;  1UYP A;  2B4W A;  5FMC A;  4PVA A;  3VT0 A;  3C7G A;  4PVI A;  3VSR A;  1Y7B A;  3D5Z A;  3VT2 A;  4AK7 A;  5B6S A;  4N1I A;  1UV4 A;  3K1U A;  3SC7 X;  3D5Y A;  5FIX A;  3WN0 A;  2X8T A;  3WAT A;  1Y9M A;  1YI7 A;  2YFT A;  5GLK A;  3OM6 A;  1W18 A;  3RWK X;  3WPU A;  2EXH A;  4U6D A;  4FFH A;  2ADE A;  5GLL A;  3CU9 A;  5JOY A;  2EXK A;  3LF7 A;  3PIG A;  5GLP A;  5GLN A;  3ZXK A;  4O8P A;  4N4B A;  3OM5 A;  5JOX A;  2AEY A;  3U14 A;  3AKG A;  3R4Y A;  3UGH A;  1ST8 A;  5GLO A;  4UDJ A;  3ZXL A;  1PT2 A;  3UGF A;  3BYN A;  4U6B A;  2YFS A;  3TAW A;  3P2N A;  2QQV A;  4D47 A;  4ONZ A;  4UDK A;  4MLG A;  5JOZ A; 
#chains in the Genus database with same CATH homology
 3AKI A;  3BYK A;  3VSS A;  5FKC A;  5FMD A;  2VDT A;  3D61 A;  2X8F A;  2QQU A;  3LDK A;  1YRZ A;  2X8S A;  3WN1 A;  4KC7 A;  4FFF A;  1GYD B;  3LIH A;  5A7V B;  5AYD A;  3VT1 A;  3WAS A;  5B6T A;  3VSZ A;  2EXJ A;  4O8O A;  5GLR A;  5C0P A;  4KCA A;  3NQH A;  4KCB A;  5FK8 A;  2ADD A;  4N2Z A;  4FFI A;  1OYG A;  3QED A;  1W2T A;  4UDK E;  5FK7 A;  5FKB A;  5JOW A;  2YFR A;  2AC1 A;  4EQV A;  3KF3 A;  4UDI A;  3OM7 A;  5A8D A;  3PIJ A;  4AK5 A;  4O8N A;  2AEZ A;  3LEM A;  4NOV A;  2XQR A;  3WAU A;  3WPZ A;  3U75 A;  4KC8 A;  3UGG A;  2QQW A;  3C7E A;  3AKF A;  3VSF A;  3BYJ A;  4QQS A;  3KF5 A;  3R4Z A;  3WMZ A;  3LV4 A;  5FLW A;  1GYE B;  3QC2 A;  3D60 A;  1VKD A;  3BYL A;  3OM4 A;  3OM2 A;  3R67 A;  3WN2 A;  3QEF A;  1Y9G A;  4KMI A;  1YIF A;  3LFI A;  4COT A;  3C7O A;  2OXB A;  3WMY A;  3LDR A;  5A8C A;  3QZ4 A;  2EXI A;  3C2U A;  4AK6 A;  3KST A;  5ANN A;  4FFG A;  4UDG A;  5GLM A;  5AYE A;  1WL7 A;  3WPV A;  5GLQ A;  5AYC A;  3ZXJ A;  1GYH A;  5A7V A;  3LIG A;  3C7F A;  3AKH A;  5FMB A;  4N2R A;  5AY9 A;  1Y4W A;  3QEE A;  3C7H A;  3WPY A;  1UYP A;  2B4W A;  5FMC A;  4PVA A;  3VT0 A;  3C7G A;  4PVI A;  3VSR A;  1Y7B A;  3D5Z A;  3VT2 A;  4AK7 A;  5B6S A;  4N1I A;  1UV4 A;  3K1U A;  3SC7 X;  3D5Y A;  5FIX A;  3WN0 A;  2X8T A;  3WAT A;  1Y9M A;  1YI7 A;  2YFT A;  5GLK A;  3OM6 A;  1W18 A;  3RWK X;  3WPU A;  2EXH A;  4U6D A;  4FFH A;  2ADE A;  5GLL A;  3CU9 A;  5JOY A;  2EXK A;  3LF7 A;  3PIG A;  5GLP A;  5GLN A;  3ZXK A;  4O8P A;  4N4B A;  3OM5 A;  5JOX A;  2AEY A;  3U14 A;  3AKG A;  3R4Y A;  3UGH A;  1ST8 A;  5GLO A;  4UDJ A;  3ZXL A;  1PT2 A;  3UGF A;  3BYN A;  4U6B A;  2YFS A;  3TAW A;  3P2N A;  2QQV A;  4D47 A;  4ONZ A;  4UDK A;  4MLG A;  5JOZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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