3WATA

Crystal structure of 4-o-beta-d-mannosyl-d-glucose phosphorylase mgp complexed with man+glc
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
389
structure length
389
Chain Sequence
SLFNDKVAKLLAGHEALLMRKNEPVEEGNGVITRYRYPVLTAAHTPVFWRYDLNEETNPFLMERIGMNATLNAGAIKWDGKYLMLVRVEGADRKSFFAVAESPNGIDNFRFWEYPVTLPEDVVPATNVYDMRLTAHEDGWIYGIFCAERHDDNAPIGDLSSATATAGIARTKDLKNWERLPDLKTKSQQRNVVLHPEFVDGKYALYTRPQDGFIDTGSGGGIGWALIDDITHAEVGEEKIIDKRYYHTIKEVKNGEGPHPIKTPQGWLHLAHGVRNCAAGLRYVLYMYMTSLDDPTRLIASPAGYFMAPVGEERIGDVSNVLFSNGWIADDDGKVFIYYASSDTRMHVATSTIERLVDYCLHTPQDGFSSSASVEILKNLIERNLRLMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords 4-O-beta-D-mannosyl-D-glucose phosphorylase
publication title Structure of Novel Enzyme in Mannan Biodegradation Process 4-O-beta-d-Mannosyl-d-Glucose Phosphorylase MGP
pubmed doi rcsb
source organism Bacteroides fragilis
total genus 109
structure length 389
sequence length 389
chains with identical sequence B
ec nomenclature ec 2.4.1.281: 4-O-beta-D-mannosyl-D-glucose phosphorylase.
pdb deposition date 2013-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04041 Glyco_hydro_130 beta-1,4-mannooligosaccharide phosphorylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 3watA00
5FK7A 3KF3A 3OM5A 1W2TA 3R67A 3SC7X 4PVAA 3UGFA 1GYHA 3BYNA 3WPUA 4UDKA 4KCBA 5ANNA 3U14A 5AYCA 3AKHA 3BYKA 2QQVA 5FKBA 3D5ZA 3AKIA 3WMYA 4UDIA 5AY9A 5JOXA 5AYEA 2EXKA 3PIGA 1YRZA 5FIXA 3VT2A 1OYGA 3R4ZA 3OM2A 3U75A 3WN1A 2ADDA 3NQHA 1UYPA 2YFTA 2AEYA 4FFFA 4UDJA 3QEFA 2EXJA 4KCAA 1WL7A 3C7GA 3WAUA 3P2NA 3WPYA 2QQUA 5FLWA 4FFHA 4EQVA 5A8DA 5JOYA 2YFRA 5B6SA 4NOVA 4O8OA 3K1UA 4N1IA 3ZXLA 3ZXJA 3LV4A 3VT1A 5JOZA 4U6DA 5GLMA 3LEMA 3LF7A 4UDGA 1Y7BA 3C7EA 1Y9GA 4U6BA 3WMZA 3CU9A 4PVIA 1YIFA 4O8PA 3R4YA 3D5YA 3LDKA 3VT0A 5GLRA 5GLKA 3LIHA 2X8FA 2XQRA 2EXHA 1GYEB 5B6TA 5FMBA 5A7VA 5GLPA 2X8SA 3LIGA 3VSFA 3QZ4A 3OM7A 4N4BA 2YFSA 4UDKE 5GLNA 5JOWA 3ZXKA 4FFGA 2AC1A 4D47A 4AK7A 2OXBA 2B4WA 3C7HA 3QEDA 3AKGA 3KF5A 3WPVA 3VSRA 3WASA 4N2ZA 4COTA 5A8CA 4KMIA 2ADEA 5GLLA 4AK5A 3QC2A 3TAWA 4KC7A 3KSTA 3AKFA 3D61A 5FMDA 3WN0A 3WPZA 1ST8A 5GLQA 3BYLA 1W18A 4KC8A 3RWKX 1PT2A 5FKCA 1YI7A 1GYDB 3PIJA 5GLOA 5C0PA 1Y4WA 2QQWA 5AYDA 2VDTA 1UV4A 2EXIA 4MLGA 1Y9MA 3C7FA 4N2RA 3OM6A 3LDRA 4O8NA 4ONZA 2X8TA 3BYJA 4AK6A 3C7OA 5FMCA 3WN2A 3C2UA 5FK8A 3WATA 5A7VB 3OM4A 4QQSA 3UGHA 3LFIA 3UGGA 4FFIA 3VSSA 1VKDA 3QEEA 2AEZA 3VSZA 3D60A
chains in the Genus database with same CATH superfamily
5FK7A 3KF3A 3OM5A 1W2TA 3R67A 3SC7X 4PVAA 3UGFA 1GYHA 3BYNA 3WPUA 4UDKA 4KCBA 5ANNA 3U14A 5AYCA 3AKHA 3BYKA 2QQVA 5FKBA 3D5ZA 3AKIA 3WMYA 4UDIA 5AY9A 5JOXA 5AYEA 2EXKA 3PIGA 1YRZA 5FIXA 3VT2A 1OYGA 3R4ZA 3OM2A 3U75A 3WN1A 2ADDA 3NQHA 1UYPA 2YFTA 2AEYA 4FFFA 4UDJA 3QEFA 2EXJA 4KCAA 1WL7A 3C7GA 3WAUA 3P2NA 3WPYA 2QQUA 5FLWA 4FFHA 4EQVA 5A8DA 5JOYA 2YFRA 5B6SA 4NOVA 4O8OA 3K1UA 1TL2A 4N1IA 3ZXLA 3LV4A 3ZXJA 3VT1A 5JOZA 4U6DA 5GLMA 3LEMA 3LF7A 4UDGA 1Y7BA 3C7EA 1Y9GA 4U6BA 3WMZA 3CU9A 4PVIA 1YIFA 4O8PA 3R4YA 3D5YA 3LDKA 3VT0A 5GLRA 5GLKA 3LIHA 2X8FA 2XQRA 2EXHA 1GYEB 5B6TA 5FMBA 5A7VA 5GLPA 2X8SA 3LIGA 3VSFA 3QZ4A 3OM7A 4N4BA 2YFSA 4UDKE 5GLNA 5JOWA 3ZXKA 4FFGA 2AC1A 4D47A 4AK7A 2OXBA 2B4WA 3C7HA 3QEDA 3AKGA 3KF5A 3WPVA 3VSRA 5C2MA 3WASA 4N2ZA 4COTA 5A8CA 4KMIA 2ADEA 5GLLA 4AK5A 3QC2A 3TAWA 4KC7A 3KSTA 3AKFA 3D61A 5FMDA 3WN0A 3WPZA 1ST8A 5GLQA 3BYLA 1W18A 4KC8A 3RWKX 1PT2A 5FKCA 1YI7A 1GYDB 3PIJA 5GLOA 5C0PA 1Y4WA 2QQWA 5AYDA 2VDTA 1UV4A 2EXIA 4MLGA 1Y9MA 3C7FA 4N2RA 3OM6A 3LDRA 4O8NA 4ONZA 2X8TA 3BYJA 4AK6A 3C7OA 5FMCA 3WN2A 3C2UA 5FK8A 3WATA 5A7VB 3OM4A 4QQSA 3UGHA 3LFIA 3UGGA 4FFIA 3VSSA 1VKDA 3QEEA 2AEZA 3VSZA 3D60A
chains in the Genus database with same CATH topology
5FK7A 3KF3A 3OM5A 1W2TA 3R67A 3SC7X 4PVAA 3UGFA 1GYHA 3BYNA 3WPUA 4UDKA 4KCBA 5ANNA 3U14A 5AYCA 3AKHA 3BYKA 2QQVA 5FKBA 3D5ZA 3AKIA 3WMYA 4UDIA 5AY9A 5JOXA 5AYEA 2EXKA 3PIGA 1YRZA 5FIXA 3VT2A 1OYGA 3R4ZA 3OM2A 3U75A 3WN1A 2ADDA 3NQHA 1UYPA 2YFTA 2AEYA 4FFFA 4UDJA 3QEFA 2EXJA 4KCAA 1WL7A 3C7GA 3WAUA 3P2NA 3WPYA 2QQUA 5FLWA 4FFHA 4EQVA 5A8DA 5JOYA 2YFRA 5B6SA 4NOVA 4O8OA 3K1UA 4N1IA 3ZXLA 3ZXJA 3LV4A 3VT1A 5JOZA 4U6DA 5GLMA 3LEMA 3LF7A 4UDGA 1Y7BA 3C7EA 1Y9GA 4U6BA 3WMZA 3CU9A 4PVIA 1YIFA 4O8PA 3R4YA 3D5YA 3LDKA 3VT0A 5GLRA 5GLKA 3LIHA 2X8FA 2XQRA 2EXHA 1GYEB 5B6TA 5FMBA 5A7VA 5GLPA 2X8SA 3LIGA 3VSFA 3QZ4A 3OM7A 4N4BA 2YFSA 4UDKE 5GLNA 5JOWA 3ZXKA 4FFGA 2AC1A 4D47A 4AK7A 2OXBA 2B4WA 3C7HA 3QEDA 3AKGA 3KF5A 3WPVA 3VSRA 3WASA 4N2ZA 4COTA 5A8CA 4KMIA 2ADEA 5GLLA 4AK5A 3QC2A 3TAWA 4KC7A 3KSTA 3AKFA 3D61A 5FMDA 3WN0A 3WPZA 1ST8A 5GLQA 3BYLA 1W18A 4KC8A 3RWKX 1PT2A 5FKCA 1YI7A 1GYDB 3PIJA 5GLOA 5C0PA 1Y4WA 2QQWA 5AYDA 2VDTA 1UV4A 2EXIA 4MLGA 1Y9MA 3C7FA 4N2RA 3OM6A 3LDRA 4O8NA 4ONZA 2X8TA 3BYJA 4AK6A 3C7OA 5FMCA 3WN2A 3C2UA 5FK8A 3WATA 5A7VB 3OM4A 4QQSA 3UGHA 3LFIA 3UGGA 4FFIA 3VSSA 1VKDA 3QEEA 2AEZA 3VSZA 3D60A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FK7 A;  3KF3 A;  3OM5 A;  1W2T A;  3R67 A;  3SC7 X;  4PVA A;  3UGF A;  1GYH A;  3BYN A;  3WPU A;  4UDK A;  4KCB A;  5ANN A;  3U14 A;  5AYC A;  3AKH A;  3BYK A;  2QQV A;  5FKB A;  3D5Z A;  3AKI A;  3WMY A;  4UDI A;  5AY9 A;  5JOX A;  5AYE A;  2EXK A;  3PIG A;  1YRZ A;  5FIX A;  3VT2 A;  1OYG A;  3R4Z A;  3OM2 A;  3U75 A;  3WN1 A;  2ADD A;  3NQH A;  1UYP A;  2YFT A;  2AEY A;  4FFF A;  4UDJ A;  3QEF A;  2EXJ A;  4KCA A;  1WL7 A;  3C7G A;  3WAU A;  3P2N A;  3WPY A;  2QQU A;  5FLW A;  4FFH A;  4EQV A;  5A8D A;  5JOY A;  2YFR A;  5B6S A;  4NOV A;  4O8O A;  3K1U A;  4N1I A;  3ZXL A;  3ZXJ A;  3LV4 A;  3VT1 A;  5JOZ A;  4U6D A;  5GLM A;  3LEM A;  3LF7 A;  4UDG A;  1Y7B A;  3C7E A;  1Y9G A;  4U6B A;  3WMZ A;  3CU9 A;  4PVI A;  1YIF A;  4O8P A;  3R4Y A;  3D5Y A;  3LDK A;  3VT0 A;  5GLR A;  5GLK A;  3LIH A;  2X8F A;  2XQR A;  2EXH A;  1GYE B;  5B6T A;  5FMB A;  5A7V A;  5GLP A;  2X8S A;  3LIG A;  3VSF A;  3QZ4 A;  3OM7 A;  4N4B A;  2YFS A;  4UDK E;  5GLN A;  5JOW A;  3ZXK A;  4FFG A;  2AC1 A;  4D47 A;  4AK7 A;  2OXB A;  2B4W A;  3C7H A;  3QED A;  3AKG A;  3KF5 A;  3WPV A;  3VSR A;  3WAS A;  4N2Z A;  4COT A;  5A8C A;  4KMI A;  2ADE A;  5GLL A;  4AK5 A;  3QC2 A;  3TAW A;  4KC7 A;  3KST A;  3AKF A;  3D61 A;  5FMD A;  3WN0 A;  3WPZ A;  1ST8 A;  5GLQ A;  3BYL A;  1W18 A;  4KC8 A;  3RWK X;  1PT2 A;  5FKC A;  1YI7 A;  1GYD B;  3PIJ A;  5GLO A;  5C0P A;  1Y4W A;  2QQW A;  5AYD A;  2VDT A;  1UV4 A;  2EXI A;  4MLG A;  1Y9M A;  3C7F A;  4N2R A;  3OM6 A;  3LDR A;  4O8N A;  4ONZ A;  2X8T A;  3BYJ A;  4AK6 A;  3C7O A;  5FMC A;  3WN2 A;  3C2U A;  5FK8 A;  3WAT A;  5A7V B;  3OM4 A;  4QQS A;  3UGH A;  3LFI A;  3UGG A;  4FFI A;  3VSS A;  1VKD A;  3QEE A;  2AEZ A;  3VSZ A;  3D60 A; 
#chains in the Genus database with same CATH topology
 5FK7 A;  3KF3 A;  3OM5 A;  1W2T A;  3R67 A;  3SC7 X;  4PVA A;  3UGF A;  1GYH A;  3BYN A;  3WPU A;  4UDK A;  4KCB A;  5ANN A;  3U14 A;  5AYC A;  3AKH A;  3BYK A;  2QQV A;  5FKB A;  3D5Z A;  3AKI A;  3WMY A;  4UDI A;  5AY9 A;  5JOX A;  5AYE A;  2EXK A;  3PIG A;  1YRZ A;  5FIX A;  3VT2 A;  1OYG A;  3R4Z A;  3OM2 A;  3U75 A;  3WN1 A;  2ADD A;  3NQH A;  1UYP A;  2YFT A;  2AEY A;  4FFF A;  4UDJ A;  3QEF A;  2EXJ A;  4KCA A;  1WL7 A;  3C7G A;  3WAU A;  3P2N A;  3WPY A;  2QQU A;  5FLW A;  4FFH A;  4EQV A;  5A8D A;  5JOY A;  2YFR A;  5B6S A;  4NOV A;  4O8O A;  3K1U A;  1TL2 A;  4N1I A;  3ZXL A;  3LV4 A;  3ZXJ A;  3VT1 A;  5JOZ A;  4U6D A;  5GLM A;  3LEM A;  3LF7 A;  4UDG A;  1Y7B A;  3C7E A;  1Y9G A;  4U6B A;  3WMZ A;  3CU9 A;  4PVI A;  1YIF A;  4O8P A;  3R4Y A;  3D5Y A;  3LDK A;  3VT0 A;  5GLR A;  5GLK A;  3LIH A;  2X8F A;  2XQR A;  2EXH A;  1GYE B;  5B6T A;  5FMB A;  5A7V A;  5GLP A;  2X8S A;  3LIG A;  3VSF A;  3QZ4 A;  3OM7 A;  4N4B A;  2YFS A;  4UDK E;  5GLN A;  5JOW A;  3ZXK A;  4FFG A;  2AC1 A;  4D47 A;  4AK7 A;  2OXB A;  2B4W A;  3C7H A;  3QED A;  3AKG A;  3KF5 A;  3WPV A;  3VSR A;  5C2M A;  3WAS A;  4N2Z A;  4COT A;  5A8C A;  4KMI A;  2ADE A;  5GLL A;  4AK5 A;  3QC2 A;  3TAW A;  4KC7 A;  3KST A;  3AKF A;  3D61 A;  5FMD A;  3WN0 A;  3WPZ A;  1ST8 A;  5GLQ A;  3BYL A;  1W18 A;  4KC8 A;  3RWK X;  1PT2 A;  5FKC A;  1YI7 A;  1GYD B;  3PIJ A;  5GLO A;  5C0P A;  1Y4W A;  2QQW A;  5AYD A;  2VDT A;  1UV4 A;  2EXI A;  4MLG A;  1Y9M A;  3C7F A;  4N2R A;  3OM6 A;  3LDR A;  4O8N A;  4ONZ A;  2X8T A;  3BYJ A;  4AK6 A;  3C7O A;  5FMC A;  3WN2 A;  3C2U A;  5FK8 A;  3WAT A;  5A7V B;  3OM4 A;  4QQS A;  3UGH A;  3LFI A;  3UGG A;  4FFI A;  3VSS A;  1VKD A;  3QEE A;  2AEZ A;  3VSZ A;  3D60 A; 
#chains in the Genus database with same CATH homology
 5FK7 A;  3KF3 A;  3OM5 A;  1W2T A;  3R67 A;  3SC7 X;  4PVA A;  3UGF A;  1GYH A;  3BYN A;  3WPU A;  4UDK A;  4KCB A;  5ANN A;  3U14 A;  5AYC A;  3AKH A;  3BYK A;  2QQV A;  5FKB A;  3D5Z A;  3AKI A;  3WMY A;  4UDI A;  5AY9 A;  5JOX A;  5AYE A;  2EXK A;  3PIG A;  1YRZ A;  5FIX A;  3VT2 A;  1OYG A;  3R4Z A;  3OM2 A;  3U75 A;  3WN1 A;  2ADD A;  3NQH A;  1UYP A;  2YFT A;  2AEY A;  4FFF A;  4UDJ A;  3QEF A;  2EXJ A;  4KCA A;  1WL7 A;  3C7G A;  3WAU A;  3P2N A;  3WPY A;  2QQU A;  5FLW A;  4FFH A;  4EQV A;  5A8D A;  5JOY A;  2YFR A;  5B6S A;  4NOV A;  4O8O A;  3K1U A;  4N1I A;  3ZXL A;  3ZXJ A;  3LV4 A;  3VT1 A;  5JOZ A;  4U6D A;  5GLM A;  3LEM A;  3LF7 A;  4UDG A;  1Y7B A;  3C7E A;  1Y9G A;  4U6B A;  3WMZ A;  3CU9 A;  4PVI A;  1YIF A;  4O8P A;  3R4Y A;  3D5Y A;  3LDK A;  3VT0 A;  5GLR A;  5GLK A;  3LIH A;  2X8F A;  2XQR A;  2EXH A;  1GYE B;  5B6T A;  5FMB A;  5A7V A;  5GLP A;  2X8S A;  3LIG A;  3VSF A;  3QZ4 A;  3OM7 A;  4N4B A;  2YFS A;  4UDK E;  5GLN A;  5JOW A;  3ZXK A;  4FFG A;  2AC1 A;  4D47 A;  4AK7 A;  2OXB A;  2B4W A;  3C7H A;  3QED A;  3AKG A;  3KF5 A;  3WPV A;  3VSR A;  3WAS A;  4N2Z A;  4COT A;  5A8C A;  4KMI A;  2ADE A;  5GLL A;  4AK5 A;  3QC2 A;  3TAW A;  4KC7 A;  3KST A;  3AKF A;  3D61 A;  5FMD A;  3WN0 A;  3WPZ A;  1ST8 A;  5GLQ A;  3BYL A;  1W18 A;  4KC8 A;  3RWK X;  1PT2 A;  5FKC A;  1YI7 A;  1GYD B;  3PIJ A;  5GLO A;  5C0P A;  1Y4W A;  2QQW A;  5AYD A;  2VDT A;  1UV4 A;  2EXI A;  4MLG A;  1Y9M A;  3C7F A;  4N2R A;  3OM6 A;  3LDR A;  4O8N A;  4ONZ A;  2X8T A;  3BYJ A;  4AK6 A;  3C7O A;  5FMC A;  3WN2 A;  3C2U A;  5FK8 A;  3WAT A;  5A7V B;  3OM4 A;  4QQS A;  3UGH A;  3LFI A;  3UGG A;  4FFI A;  3VSS A;  1VKD A;  3QEE A;  2AEZ A;  3VSZ A;  3D60 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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