3WAUA

Crystal structure of 4-o-beta-d-mannosyl-d-glucose phosphorylase mgp complexed with m1p
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
389
structure length
387
Chain Sequence
SLFNDKVAKLLAGHEALLMRKNEPVEEGNGVITRYRYPVLTAAHTPVFWRYDLNEETNPFLMERIGMNATLNAGAIKWDGKYLMLVRVEGADRKSFFAVAESPNGIDNFRFWEYPVTLPEDVVPATNVYDMRLTAHEDGWIYGIFCAERHDDNAPIGDLSSATATAGIARTKDLKNWERLPDLKTKSQQRNVVLHPEFVDGKYALYTRPQDGDTGSGGGIGWALIDDITHAEVGEEKIIDKRYYHTIKEVKNGEGPHPIKTPQGWLHLAHGVRNCAAGLRYVLYMYMTSLDDPTRLIASPAGYFMAPVGEERIGDVSNVLFSNGWIADDDGKVFIYYASSDTRMHVATSTIERLVDYCLHTPQDGFSSSASVEILKNLIERNLRLMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords 4-O-beta-D-mannosyl-D-glucose phosphorylase
publication title Structure of Novel Enzyme in Mannan Biodegradation Process 4-O-beta-d-Mannosyl-d-Glucose Phosphorylase MGP
pubmed doi rcsb
source organism Bacteroides fragilis
total genus 105
structure length 387
sequence length 389
chains with identical sequence B
ec nomenclature ec 2.4.1.281: 4-O-beta-D-mannosyl-D-glucose phosphorylase.
pdb deposition date 2013-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04041 Glyco_hydro_130 beta-1,4-mannooligosaccharide phosphorylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 3wauA00
5C0PA 5B6TA 3VT1A 2QQWA 1W2TA 5A8CA 3BYNA 3R4ZA 5AYCA 4KMIA 3C7HA 3PIJA 4D47A 3QEEA 1GYEB 3WMZA 2EXHA 4KCBA 5AYEA 3WPYA 3QEFA 3WASA 2EXJA 2AC1A 3D60A 3P2NA 3UGGA 5GLKA 4UDJA 4KCAA 3RWKX 3VSSA 4O8NA 3C7GA 1PT2A 2VDTA 4N1IA 3KSTA 3BYJA 4N2RA 3UGFA 1UV4A 4FFIA 3AKHA 2X8FA 4ONZA 5JOYA 1YRZA 1ST8A 1W18A 3KF3A 3LIHA 4AK5A 4NOVA 5FMDA 2QQUA 2X8TA 5FK7A 5GLQA 3VSRA 5B6SA 3CU9A 4QQSA 5FKBA 3QC2A 3LF7A 3WAUA 3D5ZA 2AEYA 3LDRA 4KC7A 1VKDA 3C7OA 5AY9A 3OM7A 5A8DA 5FIXA 3D61A 1YIFA 2OXBA 3VSZA 2EXIA 3C7FA 5AYDA 3WN1A 1YI7A 5GLOA 5A7VA 2XQRA 5ANNA 2X8SA 3KF5A 1UYPA 3R4YA 1Y9GA 3LFIA 5GLRA 3WN0A 3ZXJA 4FFFA 1Y7BA 3VT0A 3C7EA 2B4WA 4PVAA 3AKGA 5GLMA 2AEZA 1OYGA 5FKCA 4O8OA 3WPVA 4COTA 3LDKA 3R67A 2YFSA 5GLNA 5A7VB 5GLLA 3SC7X 1Y4WA 3OM6A 3D5YA 5JOWA 5FMCA 3OM5A 3PIGA 5FLWA 1WL7A 2ADDA 4O8PA 3K1UA 3BYKA 4KC8A 4UDKE 3VT2A 3ZXLA 3U14A 4PVIA 3LV4A 1GYHA 3OM2A 4N4BA 2EXKA 4UDIA 3QEDA 3WPUA 3WATA 2YFRA 3AKIA 5GLPA 5JOXA 4FFHA 3C2UA 4N2ZA 3WN2A 3WMYA 2QQVA 3LEMA 4U6DA 3QZ4A 4U6BA 3TAWA 3LIGA 3U75A 1Y9MA 4FFGA 3VSFA 4AK6A 3WPZA 3AKFA 5FK8A 3BYLA 3NQHA 2ADEA 4UDKA 4AK7A 1GYDB 4EQVA 2YFTA 3OM4A 5JOZA 4UDGA 3ZXKA 3UGHA 5FMBA 4MLGA
chains in the Genus database with same CATH superfamily
5C0PA 5B6TA 3VT1A 2QQWA 1W2TA 5A8CA 3BYNA 3R4ZA 5AYCA 4KMIA 3C7HA 3PIJA 4D47A 3QEEA 1GYEB 3WMZA 2EXHA 4KCBA 5AYEA 3WPYA 3QEFA 3WASA 2EXJA 2AC1A 3D60A 3P2NA 3UGGA 5GLKA 4UDJA 4KCAA 3RWKX 3VSSA 4O8NA 3C7GA 1PT2A 2VDTA 4N1IA 3KSTA 3BYJA 4N2RA 3UGFA 1UV4A 4FFIA 3AKHA 2X8FA 4ONZA 5JOYA 1YRZA 1ST8A 1W18A 3KF3A 1TL2A 3LIHA 4AK5A 5C2MA 4NOVA 5FMDA 2QQUA 2X8TA 5FK7A 5GLQA 3VSRA 5B6SA 3CU9A 4QQSA 5FKBA 3QC2A 3LF7A 3WAUA 3D5ZA 2AEYA 3LDRA 4KC7A 1VKDA 3C7OA 5AY9A 3OM7A 5A8DA 5FIXA 3D61A 1YIFA 2OXBA 3VSZA 2EXIA 3C7FA 5AYDA 3WN1A 1YI7A 5GLOA 5A7VA 2XQRA 5ANNA 2X8SA 3KF5A 1UYPA 3R4YA 1Y9GA 3LFIA 5GLRA 3WN0A 3ZXJA 4FFFA 1Y7BA 3VT0A 3C7EA 2B4WA 4PVAA 3AKGA 5GLMA 2AEZA 1OYGA 5FKCA 4O8OA 3WPVA 4COTA 3LDKA 3R67A 2YFSA 5GLNA 5A7VB 5GLLA 3SC7X 1Y4WA 3OM6A 3D5YA 5JOWA 5FMCA 3OM5A 3PIGA 5FLWA 1WL7A 2ADDA 4O8PA 3K1UA 3BYKA 4KC8A 4UDKE 3VT2A 3ZXLA 3U14A 4PVIA 3LV4A 1GYHA 3OM2A 4N4BA 2EXKA 4UDIA 3QEDA 3WPUA 3WATA 2YFRA 3AKIA 5GLPA 5JOXA 4FFHA 3C2UA 4N2ZA 3WN2A 3WMYA 2QQVA 3LEMA 4U6DA 3QZ4A 4U6BA 3TAWA 3LIGA 3U75A 1Y9MA 4FFGA 3VSFA 4AK6A 3WPZA 3AKFA 5FK8A 3BYLA 3NQHA 2ADEA 4UDKA 4AK7A 1GYDB 4EQVA 2YFTA 3OM4A 5JOZA 4UDGA 3ZXKA 3UGHA 5FMBA 4MLGA
chains in the Genus database with same CATH topology
5C0PA 5B6TA 3VT1A 2QQWA 1W2TA 5A8CA 3BYNA 3R4ZA 5AYCA 4KMIA 3C7HA 3PIJA 4D47A 3QEEA 1GYEB 3WMZA 2EXHA 4KCBA 5AYEA 3WPYA 3QEFA 3WASA 2EXJA 2AC1A 3D60A 3P2NA 3UGGA 5GLKA 4UDJA 4KCAA 3RWKX 3VSSA 4O8NA 3C7GA 1PT2A 2VDTA 4N1IA 3KSTA 3BYJA 4N2RA 3UGFA 1UV4A 4FFIA 3AKHA 2X8FA 4ONZA 5JOYA 1YRZA 1ST8A 1W18A 3KF3A 3LIHA 4AK5A 4NOVA 5FMDA 2QQUA 2X8TA 5FK7A 5GLQA 3VSRA 5B6SA 3CU9A 4QQSA 5FKBA 3QC2A 3LF7A 3WAUA 3D5ZA 2AEYA 3LDRA 4KC7A 1VKDA 3C7OA 5AY9A 3OM7A 5A8DA 5FIXA 3D61A 1YIFA 2OXBA 3VSZA 2EXIA 3C7FA 5AYDA 3WN1A 1YI7A 5GLOA 5A7VA 2XQRA 5ANNA 2X8SA 3KF5A 1UYPA 3R4YA 1Y9GA 3LFIA 5GLRA 3WN0A 3ZXJA 4FFFA 1Y7BA 3VT0A 3C7EA 2B4WA 4PVAA 3AKGA 5GLMA 2AEZA 1OYGA 5FKCA 4O8OA 3WPVA 4COTA 3LDKA 3R67A 2YFSA 5GLNA 5A7VB 5GLLA 3SC7X 1Y4WA 3OM6A 3D5YA 5JOWA 5FMCA 3OM5A 3PIGA 5FLWA 1WL7A 2ADDA 4O8PA 3K1UA 3BYKA 4KC8A 4UDKE 3VT2A 3ZXLA 3U14A 4PVIA 3LV4A 1GYHA 3OM2A 4N4BA 2EXKA 4UDIA 3QEDA 3WPUA 3WATA 2YFRA 3AKIA 5GLPA 5JOXA 4FFHA 3C2UA 4N2ZA 3WN2A 3WMYA 2QQVA 3LEMA 4U6DA 3QZ4A 4U6BA 3TAWA 3LIGA 3U75A 1Y9MA 4FFGA 3VSFA 4AK6A 3WPZA 3AKFA 5FK8A 3BYLA 3NQHA 2ADEA 4UDKA 4AK7A 1GYDB 4EQVA 2YFTA 3OM4A 5JOZA 4UDGA 3ZXKA 3UGHA 5FMBA 4MLGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C0P A;  5B6T A;  3VT1 A;  2QQW A;  1W2T A;  5A8C A;  3BYN A;  3R4Z A;  5AYC A;  4KMI A;  3C7H A;  3PIJ A;  4D47 A;  3QEE A;  1GYE B;  3WMZ A;  2EXH A;  4KCB A;  5AYE A;  3WPY A;  3QEF A;  3WAS A;  2EXJ A;  2AC1 A;  3D60 A;  3P2N A;  3UGG A;  5GLK A;  4UDJ A;  4KCA A;  3RWK X;  3VSS A;  4O8N A;  3C7G A;  1PT2 A;  2VDT A;  4N1I A;  3KST A;  3BYJ A;  4N2R A;  3UGF A;  1UV4 A;  4FFI A;  3AKH A;  2X8F A;  4ONZ A;  5JOY A;  1YRZ A;  1ST8 A;  1W18 A;  3KF3 A;  3LIH A;  4AK5 A;  4NOV A;  5FMD A;  2QQU A;  2X8T A;  5FK7 A;  5GLQ A;  3VSR A;  5B6S A;  3CU9 A;  4QQS A;  5FKB A;  3QC2 A;  3LF7 A;  3WAU A;  3D5Z A;  2AEY A;  3LDR A;  4KC7 A;  1VKD A;  3C7O A;  5AY9 A;  3OM7 A;  5A8D A;  5FIX A;  3D61 A;  1YIF A;  2OXB A;  3VSZ A;  2EXI A;  3C7F A;  5AYD A;  3WN1 A;  1YI7 A;  5GLO A;  5A7V A;  2XQR A;  5ANN A;  2X8S A;  3KF5 A;  1UYP A;  3R4Y A;  1Y9G A;  3LFI A;  5GLR A;  3WN0 A;  3ZXJ A;  4FFF A;  1Y7B A;  3VT0 A;  3C7E A;  2B4W A;  4PVA A;  3AKG A;  5GLM A;  2AEZ A;  1OYG A;  5FKC A;  4O8O A;  3WPV A;  4COT A;  3LDK A;  3R67 A;  2YFS A;  5GLN A;  5A7V B;  5GLL A;  3SC7 X;  1Y4W A;  3OM6 A;  3D5Y A;  5JOW A;  5FMC A;  3OM5 A;  3PIG A;  5FLW A;  1WL7 A;  2ADD A;  4O8P A;  3K1U A;  3BYK A;  4KC8 A;  4UDK E;  3VT2 A;  3ZXL A;  3U14 A;  4PVI A;  3LV4 A;  1GYH A;  3OM2 A;  4N4B A;  2EXK A;  4UDI A;  3QED A;  3WPU A;  3WAT A;  2YFR A;  3AKI A;  5GLP A;  5JOX A;  4FFH A;  3C2U A;  4N2Z A;  3WN2 A;  3WMY A;  2QQV A;  3LEM A;  4U6D A;  3QZ4 A;  4U6B A;  3TAW A;  3LIG A;  3U75 A;  1Y9M A;  4FFG A;  3VSF A;  4AK6 A;  3WPZ A;  3AKF A;  5FK8 A;  3BYL A;  3NQH A;  2ADE A;  4UDK A;  4AK7 A;  1GYD B;  4EQV A;  2YFT A;  3OM4 A;  5JOZ A;  4UDG A;  3ZXK A;  3UGH A;  5FMB A;  4MLG A; 
#chains in the Genus database with same CATH topology
 5C0P A;  5B6T A;  3VT1 A;  2QQW A;  1W2T A;  5A8C A;  3BYN A;  3R4Z A;  5AYC A;  4KMI A;  3C7H A;  3PIJ A;  4D47 A;  3QEE A;  1GYE B;  3WMZ A;  2EXH A;  4KCB A;  5AYE A;  3WPY A;  3QEF A;  3WAS A;  2EXJ A;  2AC1 A;  3D60 A;  3P2N A;  3UGG A;  5GLK A;  4UDJ A;  4KCA A;  3RWK X;  3VSS A;  4O8N A;  3C7G A;  1PT2 A;  2VDT A;  4N1I A;  3KST A;  3BYJ A;  4N2R A;  3UGF A;  1UV4 A;  4FFI A;  3AKH A;  2X8F A;  4ONZ A;  5JOY A;  1YRZ A;  1ST8 A;  1W18 A;  3KF3 A;  1TL2 A;  3LIH A;  4AK5 A;  5C2M A;  4NOV A;  5FMD A;  2QQU A;  2X8T A;  5FK7 A;  5GLQ A;  3VSR A;  5B6S A;  3CU9 A;  4QQS A;  5FKB A;  3QC2 A;  3LF7 A;  3WAU A;  3D5Z A;  2AEY A;  3LDR A;  4KC7 A;  1VKD A;  3C7O A;  5AY9 A;  3OM7 A;  5A8D A;  5FIX A;  3D61 A;  1YIF A;  2OXB A;  3VSZ A;  2EXI A;  3C7F A;  5AYD A;  3WN1 A;  1YI7 A;  5GLO A;  5A7V A;  2XQR A;  5ANN A;  2X8S A;  3KF5 A;  1UYP A;  3R4Y A;  1Y9G A;  3LFI A;  5GLR A;  3WN0 A;  3ZXJ A;  4FFF A;  1Y7B A;  3VT0 A;  3C7E A;  2B4W A;  4PVA A;  3AKG A;  5GLM A;  2AEZ A;  1OYG A;  5FKC A;  4O8O A;  3WPV A;  4COT A;  3LDK A;  3R67 A;  2YFS A;  5GLN A;  5A7V B;  5GLL A;  3SC7 X;  1Y4W A;  3OM6 A;  3D5Y A;  5JOW A;  5FMC A;  3OM5 A;  3PIG A;  5FLW A;  1WL7 A;  2ADD A;  4O8P A;  3K1U A;  3BYK A;  4KC8 A;  4UDK E;  3VT2 A;  3ZXL A;  3U14 A;  4PVI A;  3LV4 A;  1GYH A;  3OM2 A;  4N4B A;  2EXK A;  4UDI A;  3QED A;  3WPU A;  3WAT A;  2YFR A;  3AKI A;  5GLP A;  5JOX A;  4FFH A;  3C2U A;  4N2Z A;  3WN2 A;  3WMY A;  2QQV A;  3LEM A;  4U6D A;  3QZ4 A;  4U6B A;  3TAW A;  3LIG A;  3U75 A;  1Y9M A;  4FFG A;  3VSF A;  4AK6 A;  3WPZ A;  3AKF A;  5FK8 A;  3BYL A;  3NQH A;  2ADE A;  4UDK A;  4AK7 A;  1GYD B;  4EQV A;  2YFT A;  3OM4 A;  5JOZ A;  4UDG A;  3ZXK A;  3UGH A;  5FMB A;  4MLG A; 
#chains in the Genus database with same CATH homology
 5C0P A;  5B6T A;  3VT1 A;  2QQW A;  1W2T A;  5A8C A;  3BYN A;  3R4Z A;  5AYC A;  4KMI A;  3C7H A;  3PIJ A;  4D47 A;  3QEE A;  1GYE B;  3WMZ A;  2EXH A;  4KCB A;  5AYE A;  3WPY A;  3QEF A;  3WAS A;  2EXJ A;  2AC1 A;  3D60 A;  3P2N A;  3UGG A;  5GLK A;  4UDJ A;  4KCA A;  3RWK X;  3VSS A;  4O8N A;  3C7G A;  1PT2 A;  2VDT A;  4N1I A;  3KST A;  3BYJ A;  4N2R A;  3UGF A;  1UV4 A;  4FFI A;  3AKH A;  2X8F A;  4ONZ A;  5JOY A;  1YRZ A;  1ST8 A;  1W18 A;  3KF3 A;  3LIH A;  4AK5 A;  4NOV A;  5FMD A;  2QQU A;  2X8T A;  5FK7 A;  5GLQ A;  3VSR A;  5B6S A;  3CU9 A;  4QQS A;  5FKB A;  3QC2 A;  3LF7 A;  3WAU A;  3D5Z A;  2AEY A;  3LDR A;  4KC7 A;  1VKD A;  3C7O A;  5AY9 A;  3OM7 A;  5A8D A;  5FIX A;  3D61 A;  1YIF A;  2OXB A;  3VSZ A;  2EXI A;  3C7F A;  5AYD A;  3WN1 A;  1YI7 A;  5GLO A;  5A7V A;  2XQR A;  5ANN A;  2X8S A;  3KF5 A;  1UYP A;  3R4Y A;  1Y9G A;  3LFI A;  5GLR A;  3WN0 A;  3ZXJ A;  4FFF A;  1Y7B A;  3VT0 A;  3C7E A;  2B4W A;  4PVA A;  3AKG A;  5GLM A;  2AEZ A;  1OYG A;  5FKC A;  4O8O A;  3WPV A;  4COT A;  3LDK A;  3R67 A;  2YFS A;  5GLN A;  5A7V B;  5GLL A;  3SC7 X;  1Y4W A;  3OM6 A;  3D5Y A;  5JOW A;  5FMC A;  3OM5 A;  3PIG A;  5FLW A;  1WL7 A;  2ADD A;  4O8P A;  3K1U A;  3BYK A;  4KC8 A;  4UDK E;  3VT2 A;  3ZXL A;  3U14 A;  4PVI A;  3LV4 A;  1GYH A;  3OM2 A;  4N4B A;  2EXK A;  4UDI A;  3QED A;  3WPU A;  3WAT A;  2YFR A;  3AKI A;  5GLP A;  5JOX A;  4FFH A;  3C2U A;  4N2Z A;  3WN2 A;  3WMY A;  2QQV A;  3LEM A;  4U6D A;  3QZ4 A;  4U6B A;  3TAW A;  3LIG A;  3U75 A;  1Y9M A;  4FFG A;  3VSF A;  4AK6 A;  3WPZ A;  3AKF A;  5FK8 A;  3BYL A;  3NQH A;  2ADE A;  4UDK A;  4AK7 A;  1GYD B;  4EQV A;  2YFT A;  3OM4 A;  5JOZ A;  4UDG A;  3ZXK A;  3UGH A;  5FMB A;  4MLG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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