3WMYA

Crystal structure of streptomyces coelicolor alpha-l-arabinofuranosidase
Total Genus 72

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
302
structure length
302
Chain Sequence
GTCALPSTYRWSSTGVLAQPKSGWVALKDFTTVTHNGRHLVYGSTSSGSSYGSMVFSPFTNWSDMASAGQNAMNQAAVAPTLFYFAPKNIWVLAYQWGSWPFIYRTSSDPTDPNGWSAPQPLFTGSISGSDTGPIDQTLIADGQNMYLFFAGDNGKIYRASMPIGNFPGNFGSSYTTIMSDTKANLFEGVQVYKVQGQNQYLMIVEAMGANGRYFRSFTASSLSGSWTPQAASEGNPFAGKANSGATWTNDISHGDLVRDNPDQTMTVDPCNLQFLYQGKSPNAGGDYNSLPWRPGVLTLRR
5010015020025030030025020015010050
010203040506070Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV4 (270-273)S4 (224-232)TVIII2 (246-249)TVIII1 (179-182)S1 (184-186)S2 (199-208)S3 (211-219)TII1 (194-197)TIV2 (220-223)TIV1 (207-210)S5 (243-245)S6 (251-258)S8 (275-280)3H2 (259-261)TVIII3 (271-274)S7 (263-269)TVIII5 (280-283)TI1 (282-285)S9 (293-296)TIV5 (300-303)3H1 (235-240)TI2 (285-288)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Streptomyces coelicolor
publication title Crystal structure and characterization of the glycoside hydrolase family 62 alpha-L-arabinofuranosidase from Streptomyces coelicolor
pubmed doi rcsb
molecule keywords Extracellular exo-alpha-L-arabinofuranosidase
total genus 72
structure length 302
sequence length 302
ec nomenclature ec 3.2.1.55: Non-reducing end alpha-L-arabinofuranosidase.
pdb deposition date 2013-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00652 Ricin_B_lectin Ricin-type beta-trefoil lectin domain
A PF03664 Glyco_hydro_62 Glycosyl hydrolase family 62
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 3wmyA00
5JOXA 5FLWA 3LDKA 2AC1A 2EXHA 3VSSA 4UDIA 5GLOA 5A7VA 4AK7A 4EQVA 5A8DA 3QZ4A 1GYEB 4UDKA 3VSRA 3VT1A 3C7OA 3K1UA 3C7FA 5GLMA 4PVAA 4U6DA 1YIFA 4UDGA 3LIHA 3BYKA 3C7GA 1OYGA 3QEFA 5AYEA 5GLNA 3R4YA 1W2TA 2XQRA 1PT2A 4KC8A 3AKFA 1GYDB 3C2UA 5GLQA 4PVIA 1YI7A 2OXBA 3WATA 4KCBA 2QQVA 4ONZA 3WN0A 3OM2A 3D60A 3CU9A 2ADDA 1Y4WA 5A8CA 3C7HA 3WPUA 4KMIA 5JOYA 5A7VB 4UDJA 3WMYA 3OM5A 3BYJA 1VKDA 5C0PA 2X8TA 3PIGA 3WPZA 3KSTA 5GLPA 2YFTA 2AEZA 4UDKE 4D47A 3UGGA 3WN1A 4KC7A 3OM6A 5FMCA 4FFIA 3WPYA 4MLGA 3LDRA 3ZXJA 4N1IA 4O8NA 3R4ZA 3WPVA 4COTA 3ZXKA 2QQUA 3WN2A 4FFHA 5GLKA 3TAWA 3QEDA 5FKBA 2YFRA 5B6TA 3U75A 5GLRA 1Y7BA 2QQWA 3VT2A 3SC7X 4N4BA 3U14A 1Y9GA 1Y9MA 2YFSA 5FIXA 3OM4A 3D61A 1W18A 2EXJA 3LV4A 5GLLA 3AKGA 3UGHA 5FMDA 3WAUA 3VSZA 5ANNA 4O8PA 4FFFA 3D5YA 4FFGA 3RWKX 5AYCA 2X8FA 3QC2A 4AK6A 2ADEA 3AKIA 3VT0A 3ZXLA 2B4WA 1YRZA 1UYPA 4AK5A 3OM7A 4KCAA 2X8SA 3BYLA 3KF5A 2EXIA 3KF3A 5FKCA 1UV4A 3LEMA 3VSFA 5FMBA 5FK8A 3WMZA 3BYNA 3C7EA 4U6BA 5JOWA 3LF7A 4N2ZA 1WL7A 3P2NA 4QQSA 4O8OA 5B6SA 4NOVA 3UGFA 3WASA 4N2RA 5JOZA 1GYHA 2AEYA 3QEEA 3PIJA 5AYDA 3R67A 5FK7A 3LIGA 1ST8A 2EXKA 2VDTA 3LFIA 3NQHA 5AY9A 3AKHA 3D5ZA
chains in the Genus database with same CATH superfamily
5JOXA 5FLWA 3LDKA 2AC1A 2EXHA 3VSSA 4UDIA 5GLOA 5A7VA 4AK7A 4EQVA 5A8DA 3QZ4A 1GYEB 4UDKA 3VSRA 3VT1A 3C7OA 3K1UA 3C7FA 5GLMA 4PVAA 4U6DA 1YIFA 4UDGA 3LIHA 3BYKA 3C7GA 1OYGA 3QEFA 5AYEA 5GLNA 3R4YA 1W2TA 2XQRA 1PT2A 4KC8A 3AKFA 1GYDB 3C2UA 5GLQA 4PVIA 1YI7A 2OXBA 3WATA 4KCBA 2QQVA 4ONZA 3WN0A 3OM2A 3D60A 3CU9A 2ADDA 1Y4WA 5A8CA 3C7HA 3WPUA 4KMIA 5JOYA 5A7VB 4UDJA 3WMYA 3OM5A 3BYJA 1VKDA 5C0PA 2X8TA 3PIGA 3WPZA 3KSTA 5GLPA 2YFTA 2AEZA 4UDKE 4D47A 3UGGA 3WN1A 4KC7A 3OM6A 5FMCA 4FFIA 3WPYA 4MLGA 3LDRA 3ZXJA 1TL2A 4N1IA 4O8NA 3R4ZA 3WPVA 4COTA 3ZXKA 2QQUA 3WN2A 4FFHA 5GLKA 3TAWA 3QEDA 5FKBA 2YFRA 5B6TA 3U75A 5GLRA 1Y7BA 2QQWA 3VT2A 3SC7X 4N4BA 3U14A 1Y9GA 1Y9MA 2YFSA 5FIXA 3OM4A 3D61A 1W18A 2EXJA 3LV4A 5GLLA 3AKGA 3UGHA 5FMDA 3WAUA 3VSZA 5ANNA 4O8PA 4FFFA 3D5YA 4FFGA 3RWKX 5AYCA 2X8FA 3QC2A 4AK6A 2ADEA 3AKIA 3VT0A 3ZXLA 2B4WA 1YRZA 1UYPA 4AK5A 3OM7A 4KCAA 2X8SA 3BYLA 3KF5A 2EXIA 3KF3A 5FKCA 1UV4A 3LEMA 3VSFA 5FMBA 5FK8A 3WMZA 3BYNA 5C2MA 3C7EA 4U6BA 5JOWA 3LF7A 4N2ZA 1WL7A 3P2NA 4QQSA 4O8OA 5B6SA 4NOVA 3UGFA 3WASA 4N2RA 5JOZA 1GYHA 2AEYA 3QEEA 3PIJA 5AYDA 3R67A 5FK7A 3LIGA 1ST8A 2EXKA 2VDTA 3LFIA 3NQHA 5AY9A 3AKHA 3D5ZA
chains in the Genus database with same CATH topology
5JOXA 5FLWA 3LDKA 2AC1A 2EXHA 3VSSA 4UDIA 5GLOA 5A7VA 4AK7A 4EQVA 5A8DA 3QZ4A 1GYEB 4UDKA 3VSRA 3VT1A 3C7OA 3K1UA 3C7FA 5GLMA 4PVAA 4U6DA 1YIFA 4UDGA 3LIHA 3BYKA 3C7GA 1OYGA 3QEFA 5AYEA 5GLNA 3R4YA 1W2TA 2XQRA 1PT2A 4KC8A 3AKFA 1GYDB 3C2UA 5GLQA 4PVIA 1YI7A 2OXBA 3WATA 4KCBA 2QQVA 4ONZA 3WN0A 3OM2A 3D60A 3CU9A 2ADDA 1Y4WA 5A8CA 3C7HA 3WPUA 4KMIA 5JOYA 5A7VB 4UDJA 3WMYA 3OM5A 3BYJA 1VKDA 5C0PA 2X8TA 3PIGA 3WPZA 3KSTA 5GLPA 2YFTA 2AEZA 4UDKE 4D47A 3UGGA 3WN1A 4KC7A 3OM6A 5FMCA 4FFIA 3WPYA 4MLGA 3LDRA 3ZXJA 4N1IA 4O8NA 3R4ZA 3WPVA 4COTA 3ZXKA 2QQUA 3WN2A 4FFHA 5GLKA 3TAWA 3QEDA 5FKBA 2YFRA 5B6TA 3U75A 5GLRA 1Y7BA 2QQWA 3VT2A 3SC7X 4N4BA 3U14A 1Y9GA 1Y9MA 2YFSA 5FIXA 3OM4A 3D61A 1W18A 2EXJA 3LV4A 5GLLA 3AKGA 3UGHA 5FMDA 3WAUA 3VSZA 5ANNA 4O8PA 4FFFA 3D5YA 4FFGA 3RWKX 5AYCA 2X8FA 3QC2A 4AK6A 2ADEA 3AKIA 3VT0A 3ZXLA 2B4WA 1YRZA 1UYPA 4AK5A 3OM7A 4KCAA 2X8SA 3BYLA 3KF5A 2EXIA 3KF3A 5FKCA 1UV4A 3LEMA 3VSFA 5FMBA 5FK8A 3WMZA 3BYNA 3C7EA 4U6BA 5JOWA 3LF7A 4N2ZA 1WL7A 3P2NA 4QQSA 4O8OA 5B6SA 4NOVA 3UGFA 3WASA 4N2RA 5JOZA 1GYHA 2AEYA 3QEEA 3PIJA 5AYDA 3R67A 5FK7A 3LIGA 1ST8A 2EXKA 2VDTA 3LFIA 3NQHA 5AY9A 3AKHA 3D5ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JOX A;  5FLW A;  3LDK A;  2AC1 A;  2EXH A;  3VSS A;  4UDI A;  5GLO A;  5A7V A;  4AK7 A;  4EQV A;  5A8D A;  3QZ4 A;  1GYE B;  4UDK A;  3VSR A;  3VT1 A;  3C7O A;  3K1U A;  3C7F A;  5GLM A;  4PVA A;  4U6D A;  1YIF A;  4UDG A;  3LIH A;  3BYK A;  3C7G A;  1OYG A;  3QEF A;  5AYE A;  5GLN A;  3R4Y A;  1W2T A;  2XQR A;  1PT2 A;  4KC8 A;  3AKF A;  1GYD B;  3C2U A;  5GLQ A;  4PVI A;  1YI7 A;  2OXB A;  3WAT A;  4KCB A;  2QQV A;  4ONZ A;  3WN0 A;  3OM2 A;  3D60 A;  3CU9 A;  2ADD A;  1Y4W A;  5A8C A;  3C7H A;  3WPU A;  4KMI A;  5JOY A;  5A7V B;  4UDJ A;  3WMY A;  3OM5 A;  3BYJ A;  1VKD A;  5C0P A;  2X8T A;  3PIG A;  3WPZ A;  3KST A;  5GLP A;  2YFT A;  2AEZ A;  4UDK E;  4D47 A;  3UGG A;  3WN1 A;  4KC7 A;  3OM6 A;  5FMC A;  4FFI A;  3WPY A;  4MLG A;  3LDR A;  3ZXJ A;  4N1I A;  4O8N A;  3R4Z A;  3WPV A;  4COT A;  3ZXK A;  2QQU A;  3WN2 A;  4FFH A;  5GLK A;  3TAW A;  3QED A;  5FKB A;  2YFR A;  5B6T A;  3U75 A;  5GLR A;  1Y7B A;  2QQW A;  3VT2 A;  3SC7 X;  4N4B A;  3U14 A;  1Y9G A;  1Y9M A;  2YFS A;  5FIX A;  3OM4 A;  3D61 A;  1W18 A;  2EXJ A;  3LV4 A;  5GLL A;  3AKG A;  3UGH A;  5FMD A;  3WAU A;  3VSZ A;  5ANN A;  4O8P A;  4FFF A;  3D5Y A;  4FFG A;  3RWK X;  5AYC A;  2X8F A;  3QC2 A;  4AK6 A;  2ADE A;  3AKI A;  3VT0 A;  3ZXL A;  2B4W A;  1YRZ A;  1UYP A;  4AK5 A;  3OM7 A;  4KCA A;  2X8S A;  3BYL A;  3KF5 A;  2EXI A;  3KF3 A;  5FKC A;  1UV4 A;  3LEM A;  3VSF A;  5FMB A;  5FK8 A;  3WMZ A;  3BYN A;  3C7E A;  4U6B A;  5JOW A;  3LF7 A;  4N2Z A;  1WL7 A;  3P2N A;  4QQS A;  4O8O A;  5B6S A;  4NOV A;  3UGF A;  3WAS A;  4N2R A;  5JOZ A;  1GYH A;  2AEY A;  3QEE A;  3PIJ A;  5AYD A;  3R67 A;  5FK7 A;  3LIG A;  1ST8 A;  2EXK A;  2VDT A;  3LFI A;  3NQH A;  5AY9 A;  3AKH A;  3D5Z A; 
#chains in the Genus database with same CATH topology
 5JOX A;  5FLW A;  3LDK A;  2AC1 A;  2EXH A;  3VSS A;  4UDI A;  5GLO A;  5A7V A;  4AK7 A;  4EQV A;  5A8D A;  3QZ4 A;  1GYE B;  4UDK A;  3VSR A;  3VT1 A;  3C7O A;  3K1U A;  3C7F A;  5GLM A;  4PVA A;  4U6D A;  1YIF A;  4UDG A;  3LIH A;  3BYK A;  3C7G A;  1OYG A;  3QEF A;  5AYE A;  5GLN A;  3R4Y A;  1W2T A;  2XQR A;  1PT2 A;  4KC8 A;  3AKF A;  1GYD B;  3C2U A;  5GLQ A;  4PVI A;  1YI7 A;  2OXB A;  3WAT A;  4KCB A;  2QQV A;  4ONZ A;  3WN0 A;  3OM2 A;  3D60 A;  3CU9 A;  2ADD A;  1Y4W A;  5A8C A;  3C7H A;  3WPU A;  4KMI A;  5JOY A;  5A7V B;  4UDJ A;  3WMY A;  3OM5 A;  3BYJ A;  1VKD A;  5C0P A;  2X8T A;  3PIG A;  3WPZ A;  3KST A;  5GLP A;  2YFT A;  2AEZ A;  4UDK E;  4D47 A;  3UGG A;  3WN1 A;  4KC7 A;  3OM6 A;  5FMC A;  4FFI A;  3WPY A;  4MLG A;  3LDR A;  3ZXJ A;  1TL2 A;  4N1I A;  4O8N A;  3R4Z A;  3WPV A;  4COT A;  3ZXK A;  2QQU A;  3WN2 A;  4FFH A;  5GLK A;  3TAW A;  3QED A;  5FKB A;  2YFR A;  5B6T A;  3U75 A;  5GLR A;  1Y7B A;  2QQW A;  3VT2 A;  3SC7 X;  4N4B A;  3U14 A;  1Y9G A;  1Y9M A;  2YFS A;  5FIX A;  3OM4 A;  3D61 A;  1W18 A;  2EXJ A;  3LV4 A;  5GLL A;  3AKG A;  3UGH A;  5FMD A;  3WAU A;  3VSZ A;  5ANN A;  4O8P A;  4FFF A;  3D5Y A;  4FFG A;  3RWK X;  5AYC A;  2X8F A;  3QC2 A;  4AK6 A;  2ADE A;  3AKI A;  3VT0 A;  3ZXL A;  2B4W A;  1YRZ A;  1UYP A;  4AK5 A;  3OM7 A;  4KCA A;  2X8S A;  3BYL A;  3KF5 A;  2EXI A;  3KF3 A;  5FKC A;  1UV4 A;  3LEM A;  3VSF A;  5FMB A;  5FK8 A;  3WMZ A;  3BYN A;  5C2M A;  3C7E A;  4U6B A;  5JOW A;  3LF7 A;  4N2Z A;  1WL7 A;  3P2N A;  4QQS A;  4O8O A;  5B6S A;  4NOV A;  3UGF A;  3WAS A;  4N2R A;  5JOZ A;  1GYH A;  2AEY A;  3QEE A;  3PIJ A;  5AYD A;  3R67 A;  5FK7 A;  3LIG A;  1ST8 A;  2EXK A;  2VDT A;  3LFI A;  3NQH A;  5AY9 A;  3AKH A;  3D5Z A; 
#chains in the Genus database with same CATH homology
 5JOX A;  5FLW A;  3LDK A;  2AC1 A;  2EXH A;  3VSS A;  4UDI A;  5GLO A;  5A7V A;  4AK7 A;  4EQV A;  5A8D A;  3QZ4 A;  1GYE B;  4UDK A;  3VSR A;  3VT1 A;  3C7O A;  3K1U A;  3C7F A;  5GLM A;  4PVA A;  4U6D A;  1YIF A;  4UDG A;  3LIH A;  3BYK A;  3C7G A;  1OYG A;  3QEF A;  5AYE A;  5GLN A;  3R4Y A;  1W2T A;  2XQR A;  1PT2 A;  4KC8 A;  3AKF A;  1GYD B;  3C2U A;  5GLQ A;  4PVI A;  1YI7 A;  2OXB A;  3WAT A;  4KCB A;  2QQV A;  4ONZ A;  3WN0 A;  3OM2 A;  3D60 A;  3CU9 A;  2ADD A;  1Y4W A;  5A8C A;  3C7H A;  3WPU A;  4KMI A;  5JOY A;  5A7V B;  4UDJ A;  3WMY A;  3OM5 A;  3BYJ A;  1VKD A;  5C0P A;  2X8T A;  3PIG A;  3WPZ A;  3KST A;  5GLP A;  2YFT A;  2AEZ A;  4UDK E;  4D47 A;  3UGG A;  3WN1 A;  4KC7 A;  3OM6 A;  5FMC A;  4FFI A;  3WPY A;  4MLG A;  3LDR A;  3ZXJ A;  4N1I A;  4O8N A;  3R4Z A;  3WPV A;  4COT A;  3ZXK A;  2QQU A;  3WN2 A;  4FFH A;  5GLK A;  3TAW A;  3QED A;  5FKB A;  2YFR A;  5B6T A;  3U75 A;  5GLR A;  1Y7B A;  2QQW A;  3VT2 A;  3SC7 X;  4N4B A;  3U14 A;  1Y9G A;  1Y9M A;  2YFS A;  5FIX A;  3OM4 A;  3D61 A;  1W18 A;  2EXJ A;  3LV4 A;  5GLL A;  3AKG A;  3UGH A;  5FMD A;  3WAU A;  3VSZ A;  5ANN A;  4O8P A;  4FFF A;  3D5Y A;  4FFG A;  3RWK X;  5AYC A;  2X8F A;  3QC2 A;  4AK6 A;  2ADE A;  3AKI A;  3VT0 A;  3ZXL A;  2B4W A;  1YRZ A;  1UYP A;  4AK5 A;  3OM7 A;  4KCA A;  2X8S A;  3BYL A;  3KF5 A;  2EXI A;  3KF3 A;  5FKC A;  1UV4 A;  3LEM A;  3VSF A;  5FMB A;  5FK8 A;  3WMZ A;  3BYN A;  3C7E A;  4U6B A;  5JOW A;  3LF7 A;  4N2Z A;  1WL7 A;  3P2N A;  4QQS A;  4O8O A;  5B6S A;  4NOV A;  3UGF A;  3WAS A;  4N2R A;  5JOZ A;  1GYH A;  2AEY A;  3QEE A;  3PIJ A;  5AYD A;  3R67 A;  5FK7 A;  3LIG A;  1ST8 A;  2EXK A;  2VDT A;  3LFI A;  3NQH A;  5AY9 A;  3AKH A;  3D5Z A; 
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