The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
73
|
sequence length |
350
|
structure length |
343
|
Chain Sequence |
DNELFSQFKYTRLKGFDYNNGDGTISRRDPSRPILVNGKYYIYYTKRDTKVPPIGWNRAKEATDEIPSTDWDLCEIWYATSEDGTTWKEEGVAIARPEKPKPGWRSVATPDILVWKGKYYLYYQAFNEPSGLRGDWCPVSVSYADSPDGPWTHGGDSVIPFGKKGEWDQDATHDPQPIVYKGKIHLYYKAAYNKYAVGHGLAIADDPLGPFEKHPLNPVMTSGHETTYFPFKEGVATLAIKDGNERYTMQYAKDGVNFEIASVVSLAPTAAAPFAADAFTDSGNGRGVTWGLCHFTNASNNPKKGYSIIARFDCDLSLDVDDPFYKNTGVWHRPEVYFAQAPR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Biochemical and structural investigation of two paralogous glycoside hydrolases from Zobellia galactanivorans: novel insights into the evolution, dimerization plasticity and catalytic mechanism of the GH117 family.
pubmed doi rcsb |
| molecule keywords |
Conserved hypothetical lipoprotein
|
| molecule tags |
Hydrolase
|
| source organism |
Zobellia galactanivorans
|
| total genus |
73
|
| structure length |
343
|
| sequence length |
350
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
3.2.1.-: |
| pdb deposition date | 2014-07-28 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 5 Propeller | Tachylectin-2; Chain A | Glycosyl hydrolase domain; family 43 |
#chains in the Genus database with same CATH superfamily 4KCA A; 4NOV A; 4AK7 A; 3WN0 A; 3D5Y A; 3C7O A; 3PIG A; 3LDR A; 4FFH A; 4KMI A; 4U6B A; 3UGH A; 3VT2 A; 2AEZ A; 3WAS A; 5FMB A; 3P2N A; 3VSS A; 2YFS A; 3WMY A; 1Y9M A; 5ANN A; 3WPU A; 1ST8 A; 3R4Z A; 1GYH A; 4UDJ A; 3UGG A; 4UDI A; 2EXK A; 3ZXJ A; 3UGF A; 3AKI A; 1YI7 A; 2QQV A; 3C2U A; 3QEE A; 5GLQ A; 3VT1 A; 3WPV A; 3OM5 A; 3VSZ A; 3QC2 A; 3BYL A; 1Y7B A; 4ONZ A; 1Y4W A; 4KCB A; 5FKB A; 2QQW A; 5A7V A; 4KC8 A; 5JOZ A; 3NQH A; 3D61 A; 2ADE A; 3C7G A; 3WPZ A; 5FIX A; 2XQR A; 4N4B A; 1Y9G A; 2X8S A; 3ZXK A; 4UDG A; 1YIF A; 2OXB A; 3AKH A; 3BYN A; 2B4W A; 5FKC A; 3LFI A; 4N2R A; 5A8C A; 5JOY A; 3ZXL A; 5GLM A; 4FFI A; 5A8D A; 3WAT A; 1VKD A; 4PVA A; 3QED A; 2YFR A; 4FFF A; 3TAW A; 4QQS A; 4FFG A; 3CU9 A; 3C7F A; 3OM7 A; 3C7E A; 4N2Z A; 5GLP A; 1PT2 A; 3BYK A; 3QZ4 A; 3VT0 A; 2X8T A; 2EXI A; 3LIG A; 4O8N A; 5GLO A; 2AEY A; 5AYE A; 2AC1 A; 2ADD A; 4U6D A; 5A7V B; 3R4Y A; 1GYD B; 3OM2 A; 1UV4 A; 3KST A; 3R67 A; 4UDK A; 3K1U A; 5C0P A; 3SC7 X; 3LEM A; 4COT A; 2YFT A; 5AYC A; 5JOW A; 5AY9 A; 3WN2 A; 3D60 A; 5GLR A; 3VSF A; 1OYG A; 3WMZ A; 5B6S A; 1W18 A; 3U14 A; 3AKG A; 4UDK E; 5FLW A; 2EXH A; 3PIJ A; 3KF5 A; 5FK7 A; 3C7H A; 5GLK A; 5AYD A; 5FMC A; 5GLN A; 3WPY A; 4D47 A; 3QEF A; 4AK5 A; 3KF3 A; 1YRZ A; 4KC7 A; 3WAU A; 1GYE B; 3BYJ A; 2QQU A; 2VDT A; 3LIH A; 3RWK X; 2EXJ A; 5FMD A; 3OM4 A; 3VSR A; 1W2T A; 3LDK A; 1UYP A; 3U75 A; 4O8P A; 5JOX A; 3D5Z A; 1WL7 A; 4PVI A; 2X8F A; 3AKF A; 3OM6 A; 5FK8 A; 3LF7 A; 3WN1 A; 4MLG A; 5B6T A; 4AK6 A; 4N1I A; 4O8O A; 5GLL A; 4EQV A; 3LV4 A; #chains in the Genus database with same CATH topology 4KCA A; 4NOV A; 4AK7 A; 3WN0 A; 3D5Y A; 3C7O A; 3PIG A; 3LDR A; 4FFH A; 4KMI A; 4U6B A; 3UGH A; 3VT2 A; 2AEZ A; 3WAS A; 5FMB A; 3P2N A; 3VSS A; 2YFS A; 3WMY A; 1Y9M A; 5ANN A; 3WPU A; 1ST8 A; 3R4Z A; 1GYH A; 4UDJ A; 3UGG A; 4UDI A; 2EXK A; 3ZXJ A; 3UGF A; 3AKI A; 1YI7 A; 2QQV A; 3C2U A; 3QEE A; 5GLQ A; 3VT1 A; 3WPV A; 3OM5 A; 3VSZ A; 3QC2 A; 3BYL A; 1Y7B A; 4ONZ A; 1Y4W A; 4KCB A; 5FKB A; 2QQW A; 5A7V A; 4KC8 A; 5JOZ A; 3NQH A; 3D61 A; 2ADE A; 3C7G A; 3WPZ A; 5FIX A; 2XQR A; 4N4B A; 1Y9G A; 2X8S A; 3ZXK A; 4UDG A; 1YIF A; 2OXB A; 3AKH A; 3BYN A; 2B4W A; 5FKC A; 3LFI A; 4N2R A; 5A8C A; 5JOY A; 3ZXL A; 5GLM A; 4FFI A; 5A8D A; 3WAT A; 1VKD A; 4PVA A; 3QED A; 2YFR A; 4FFF A; 1TL2 A; 4QQS A; 3TAW A; 4FFG A; 3CU9 A; 3C7F A; 3OM7 A; 3C7E A; 4N2Z A; 5GLP A; 1PT2 A; 3BYK A; 3QZ4 A; 3VT0 A; 2X8T A; 2EXI A; 3LIG A; 4O8N A; 5GLO A; 2AEY A; 5AYE A; 2AC1 A; 2ADD A; 4U6D A; 5A7V B; 3R4Y A; 1GYD B; 3OM2 A; 1UV4 A; 3KST A; 3R67 A; 4UDK A; 3K1U A; 5C0P A; 3SC7 X; 3LEM A; 4COT A; 2YFT A; 5AYC A; 5JOW A; 5AY9 A; 3WN2 A; 3D60 A; 5GLR A; 3VSF A; 1OYG A; 3WMZ A; 5B6S A; 1W18 A; 3U14 A; 3AKG A; 4UDK E; 5FLW A; 2EXH A; 3PIJ A; 3KF5 A; 5FK7 A; 3C7H A; 5GLK A; 5AYD A; 5FMC A; 5GLN A; 3WPY A; 4D47 A; 3QEF A; 4AK5 A; 3KF3 A; 1YRZ A; 4KC7 A; 3WAU A; 1GYE B; 3BYJ A; 2QQU A; 2VDT A; 3LIH A; 3RWK X; 2EXJ A; 5FMD A; 3OM4 A; 3VSR A; 1W2T A; 3LDK A; 1UYP A; 3U75 A; 4O8P A; 5JOX A; 5C2M A; 3D5Z A; 1WL7 A; 4PVI A; 2X8F A; 3AKF A; 3OM6 A; 5FK8 A; 3LF7 A; 3WN1 A; 4MLG A; 5B6T A; 4AK6 A; 4N1I A; 4O8O A; 5GLL A; 4EQV A; 3LV4 A; #chains in the Genus database with same CATH homology 4KCA A; 4NOV A; 4AK7 A; 3WN0 A; 3D5Y A; 3C7O A; 3PIG A; 3LDR A; 4FFH A; 4KMI A; 4U6B A; 3UGH A; 3VT2 A; 2AEZ A; 3WAS A; 5FMB A; 3P2N A; 3VSS A; 2YFS A; 3WMY A; 1Y9M A; 5ANN A; 3WPU A; 1ST8 A; 3R4Z A; 1GYH A; 4UDJ A; 3UGG A; 4UDI A; 2EXK A; 3ZXJ A; 3UGF A; 3AKI A; 1YI7 A; 2QQV A; 3C2U A; 3QEE A; 5GLQ A; 3VT1 A; 3WPV A; 3OM5 A; 3VSZ A; 3QC2 A; 3BYL A; 1Y7B A; 4ONZ A; 1Y4W A; 4KCB A; 5FKB A; 2QQW A; 5A7V A; 4KC8 A; 5JOZ A; 3NQH A; 3D61 A; 2ADE A; 3C7G A; 3WPZ A; 5FIX A; 2XQR A; 4N4B A; 1Y9G A; 2X8S A; 3ZXK A; 4UDG A; 1YIF A; 2OXB A; 3AKH A; 3BYN A; 2B4W A; 5FKC A; 3LFI A; 4N2R A; 5A8C A; 5JOY A; 3ZXL A; 5GLM A; 4FFI A; 5A8D A; 3WAT A; 1VKD A; 4PVA A; 3QED A; 2YFR A; 4FFF A; 3TAW A; 4QQS A; 4FFG A; 3CU9 A; 3C7F A; 3OM7 A; 3C7E A; 4N2Z A; 5GLP A; 1PT2 A; 3BYK A; 3QZ4 A; 3VT0 A; 2X8T A; 2EXI A; 3LIG A; 4O8N A; 5GLO A; 2AEY A; 5AYE A; 2AC1 A; 2ADD A; 4U6D A; 5A7V B; 3R4Y A; 1GYD B; 3OM2 A; 1UV4 A; 3KST A; 3R67 A; 4UDK A; 3K1U A; 5C0P A; 3SC7 X; 3LEM A; 4COT A; 2YFT A; 5AYC A; 5JOW A; 5AY9 A; 3WN2 A; 3D60 A; 5GLR A; 3VSF A; 1OYG A; 3WMZ A; 5B6S A; 1W18 A; 3U14 A; 3AKG A; 4UDK E; 5FLW A; 2EXH A; 3PIJ A; 3KF5 A; 5FK7 A; 3C7H A; 5GLK A; 5AYD A; 5FMC A; 5GLN A; 3WPY A; 4D47 A; 3QEF A; 4AK5 A; 3KF3 A; 1YRZ A; 4KC7 A; 3WAU A; 1GYE B; 3BYJ A; 2QQU A; 2VDT A; 3LIH A; 3RWK X; 2EXJ A; 5FMD A; 3OM4 A; 3VSR A; 1W2T A; 3LDK A; 1UYP A; 3U75 A; 4O8P A; 5JOX A; 3D5Z A; 1WL7 A; 4PVI A; 2X8F A; 3AKF A; 3OM6 A; 5FK8 A; 3LF7 A; 3WN1 A; 4MLG A; 5B6T A; 4AK6 A; 4N1I A; 4O8O A; 5GLL A; 4EQV A; 3LV4 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
