4U6DA

Zg3615, a family 117 glycoside hydrolase in complex with beta-3,6-anhydro-l-galactose
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
382
structure length
382
Chain Sequence
EGFPFILPKEKPNRPLSAAMQRNYDNYMAPRPENNELYTQFKYTELKGFDYNGHDGTISRRDPSKVIYENGKYYVWYTYRNTPTPPQGAKNSNDTIPSADWDLAEIWYATSKDGFTWEEQGVAVPRPPKPNVGWRSVTTTDILKWKGKFYLYYQGFMEASGTRGDDCPVAVSYADSPDGPWTPHTEVVIPNGKKGEWDQYSIHDPYPIVYKDKIYLYYKSDFDGDPNLVRMQGLAIADNPLGPFKKSPLNPVINSGHETTLFPFKEGMAALVIRDGTEHNTVQYAEDGVNFNIASIVEFMPNAAGPYVADAFTNTKYGRGISWGISHFTNATTWDQNHAVLARFDCDLSLDVDDPHMKRLGTYFKPEFYYQMGLSKKQRERI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Biochemical and structural investigation of two paralogous glycoside hydrolases from Zobellia galactanivorans: novel insights into the evolution, dimerization plasticity and catalytic mechanism of the GH117 family.
pubmed doi rcsb
molecule tags Hydrolase
source organism Zobellia galactanivorans
molecule keywords Conserved hypothetical periplasmic protein
total genus 92
structure length 382
sequence length 382
chains with identical sequence B
ec nomenclature ec 3.2.1.-:
pdb deposition date 2014-07-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 4u6dA00
3AKIA 3WASA 3BYJA 4U6BA 4U6DA 5GLKA 3LFIA 5A8DA 3LIGA 2X8SA 3C7OA 1W2TA 1Y4WA 4KC8A 1UYPA 5B6SA 3QEFA 3VT2A 3WPUA 5GLLA 3WN1A 3QZ4A 5FIXA 4AK5A 3BYNA 3VT1A 1ST8A 3D5YA 4FFIA 2B4WA 4PVIA 3VSSA 3WN0A 3C2UA 3UGFA 4UDKA 3NQHA 4N1IA 3D60A 3C7HA 5FK8A 3C7FA 5FKCA 4FFHA 3TAWA 1GYEB 2EXIA 5JOWA 4KCAA 5FLWA 5GLNA 4FFFA 1YRZA 2YFRA 4N2ZA 3OM7A 1OYGA 2XQRA 5FK7A 3R4ZA 3PIJA 3D61A 4UDIA 4UDJA 3U14A 4EQVA 4N4BA 3WPVA 1PT2A 5FKBA 3KF3A 5JOZA 3LDRA 4N2RA 4KMIA 3SC7X 5GLRA 3LDKA 2X8TA 1UV4A 1Y7BA 3BYLA 1WL7A 2EXHA 3KF5A 5GLOA 3R4YA 3LIHA 5AY9A 2YFTA 3C7EA 5C0PA 4PVAA 3OM5A 3WAUA 3WMZA 2AEYA 3WN2A 2QQUA 3QEDA 1GYDB 3OM4A 4KC7A 4COTA 3RWKX 4ONZA 2QQWA 3LF7A 1Y9GA 3WATA 5JOXA 3K1UA 3R67A 4NOVA 3QC2A 3U75A 2YFSA 3D5ZA 2OXBA 5A8CA 3PIGA 3ZXKA 3VT0A 3UGHA 2ADDA 2EXJA 3VSRA 5B6TA 5GLMA 3LV4A 4KCBA 1VKDA 3UGGA 5GLPA 1W18A 4QQSA 3P2NA 5FMCA 3KSTA 5FMBA 3ZXJA 3WPYA 4O8PA 3C7GA 4FFGA 1YIFA 1Y9MA 2AC1A 5A7VA 3AKHA 3ZXLA 3AKFA 3QEEA 5JOYA 3BYKA 3VSFA 5A7VB 3CU9A 2ADEA 2EXKA 1YI7A 2QQVA 3OM6A 5ANNA 2X8FA 3AKGA 4D47A 5AYEA 3WPZA 4O8NA 5AYDA 4UDGA 4AK7A 1GYHA 4AK6A 2VDTA 5FMDA 2AEZA 3WMYA 4O8OA 3VSZA 3OM2A 5AYCA 4MLGA 4UDKE 3LEMA 5GLQA
chains in the Genus database with same CATH superfamily
3AKIA 3WASA 3BYJA 4U6BA 4U6DA 5GLKA 3LFIA 5A8DA 3LIGA 2X8SA 3C7OA 1W2TA 1Y4WA 4KC8A 1UYPA 5B6SA 3QEFA 3VT2A 3WPUA 5GLLA 3WN1A 3QZ4A 5FIXA 4AK5A 3BYNA 3VT1A 1ST8A 3D5YA 4FFIA 2B4WA 4PVIA 3VSSA 3WN0A 3C2UA 3UGFA 4UDKA 3NQHA 4N1IA 3D60A 3C7HA 5FK8A 3C7FA 5FKCA 4FFHA 3TAWA 1GYEB 2EXIA 5JOWA 4KCAA 5FLWA 5GLNA 4FFFA 1YRZA 2YFRA 5C2MA 4N2ZA 3OM7A 1OYGA 2XQRA 5FK7A 3R4ZA 3PIJA 3D61A 4UDIA 4UDJA 3U14A 4EQVA 4N4BA 3WPVA 1PT2A 5FKBA 3KF3A 5JOZA 3LDRA 4N2RA 4KMIA 3SC7X 5GLRA 3LDKA 2X8TA 1UV4A 1Y7BA 3BYLA 1WL7A 2EXHA 3KF5A 5GLOA 3R4YA 3LIHA 5AY9A 2YFTA 3C7EA 5C0PA 4PVAA 3OM5A 3WAUA 3WMZA 2AEYA 3WN2A 2QQUA 3QEDA 1TL2A 1GYDB 3OM4A 4KC7A 4COTA 3RWKX 4ONZA 2QQWA 3LF7A 1Y9GA 3WATA 5JOXA 3K1UA 3R67A 4NOVA 3QC2A 3U75A 2YFSA 3D5ZA 2OXBA 5A8CA 3PIGA 3ZXKA 3VT0A 3UGHA 2ADDA 2EXJA 3VSRA 5B6TA 5GLMA 3LV4A 4KCBA 1VKDA 3UGGA 5GLPA 1W18A 4QQSA 3P2NA 5FMCA 3KSTA 5FMBA 3ZXJA 3WPYA 4O8PA 3C7GA 4FFGA 1YIFA 1Y9MA 2AC1A 5A7VA 3AKHA 3ZXLA 3AKFA 3QEEA 5JOYA 3BYKA 3VSFA 5A7VB 3CU9A 2ADEA 2EXKA 1YI7A 2QQVA 3OM6A 5ANNA 2X8FA 3AKGA 4D47A 5AYEA 3WPZA 4O8NA 5AYDA 4UDGA 4AK7A 1GYHA 4AK6A 2VDTA 5FMDA 2AEZA 3WMYA 4O8OA 3VSZA 3OM2A 5AYCA 4MLGA 4UDKE 3LEMA 5GLQA
chains in the Genus database with same CATH topology
3AKIA 3WASA 3BYJA 4U6BA 4U6DA 5GLKA 3LFIA 5A8DA 3LIGA 2X8SA 3C7OA 1W2TA 1Y4WA 4KC8A 1UYPA 5B6SA 3QEFA 3VT2A 3WPUA 5GLLA 3WN1A 3QZ4A 5FIXA 4AK5A 3BYNA 3VT1A 1ST8A 3D5YA 4FFIA 2B4WA 4PVIA 3VSSA 3WN0A 3C2UA 3UGFA 4UDKA 3NQHA 4N1IA 3D60A 3C7HA 5FK8A 3C7FA 5FKCA 4FFHA 3TAWA 1GYEB 2EXIA 5JOWA 4KCAA 5FLWA 5GLNA 4FFFA 1YRZA 2YFRA 4N2ZA 3OM7A 1OYGA 2XQRA 5FK7A 3R4ZA 3PIJA 3D61A 4UDIA 4UDJA 3U14A 4EQVA 4N4BA 3WPVA 1PT2A 5FKBA 3KF3A 5JOZA 3LDRA 4N2RA 4KMIA 3SC7X 5GLRA 3LDKA 2X8TA 1UV4A 1Y7BA 3BYLA 1WL7A 2EXHA 3KF5A 5GLOA 3R4YA 3LIHA 5AY9A 2YFTA 3C7EA 5C0PA 4PVAA 3OM5A 3WAUA 3WMZA 2AEYA 3WN2A 2QQUA 3QEDA 1GYDB 3OM4A 4KC7A 4COTA 3RWKX 4ONZA 2QQWA 3LF7A 1Y9GA 3WATA 5JOXA 3K1UA 3R67A 4NOVA 3QC2A 3U75A 2YFSA 3D5ZA 2OXBA 5A8CA 3PIGA 3ZXKA 3VT0A 3UGHA 2ADDA 2EXJA 3VSRA 5B6TA 5GLMA 3LV4A 4KCBA 1VKDA 3UGGA 5GLPA 1W18A 4QQSA 3P2NA 5FMCA 3KSTA 5FMBA 3ZXJA 3WPYA 4O8PA 3C7GA 4FFGA 1YIFA 1Y9MA 2AC1A 5A7VA 3AKHA 3ZXLA 3AKFA 3QEEA 5JOYA 3BYKA 3VSFA 5A7VB 3CU9A 2ADEA 2EXKA 1YI7A 2QQVA 3OM6A 5ANNA 2X8FA 3AKGA 4D47A 5AYEA 3WPZA 4O8NA 5AYDA 4UDGA 4AK7A 1GYHA 4AK6A 2VDTA 5FMDA 2AEZA 3WMYA 4O8OA 3VSZA 3OM2A 5AYCA 4MLGA 4UDKE 3LEMA 5GLQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AKI A;  3WAS A;  3BYJ A;  4U6B A;  4U6D A;  5GLK A;  3LFI A;  5A8D A;  3LIG A;  2X8S A;  3C7O A;  1W2T A;  1Y4W A;  4KC8 A;  1UYP A;  5B6S A;  3QEF A;  3VT2 A;  3WPU A;  5GLL A;  3WN1 A;  3QZ4 A;  5FIX A;  4AK5 A;  3BYN A;  3VT1 A;  1ST8 A;  3D5Y A;  4FFI A;  2B4W A;  4PVI A;  3VSS A;  3WN0 A;  3C2U A;  3UGF A;  4UDK A;  3NQH A;  4N1I A;  3D60 A;  3C7H A;  5FK8 A;  3C7F A;  5FKC A;  4FFH A;  3TAW A;  1GYE B;  2EXI A;  5JOW A;  4KCA A;  5FLW A;  5GLN A;  4FFF A;  1YRZ A;  2YFR A;  4N2Z A;  3OM7 A;  1OYG A;  2XQR A;  5FK7 A;  3R4Z A;  3PIJ A;  3D61 A;  4UDI A;  4UDJ A;  3U14 A;  4EQV A;  4N4B A;  3WPV A;  1PT2 A;  5FKB A;  3KF3 A;  5JOZ A;  3LDR A;  4N2R A;  4KMI A;  3SC7 X;  5GLR A;  3LDK A;  2X8T A;  1UV4 A;  1Y7B A;  3BYL A;  1WL7 A;  2EXH A;  3KF5 A;  5GLO A;  3R4Y A;  3LIH A;  5AY9 A;  2YFT A;  3C7E A;  5C0P A;  4PVA A;  3OM5 A;  3WAU A;  3WMZ A;  2AEY A;  3WN2 A;  2QQU A;  3QED A;  1GYD B;  3OM4 A;  4KC7 A;  4COT A;  3RWK X;  4ONZ A;  2QQW A;  3LF7 A;  1Y9G A;  3WAT A;  5JOX A;  3K1U A;  3R67 A;  4NOV A;  3QC2 A;  3U75 A;  2YFS A;  3D5Z A;  2OXB A;  5A8C A;  3PIG A;  3ZXK A;  3VT0 A;  3UGH A;  2ADD A;  2EXJ A;  3VSR A;  5B6T A;  5GLM A;  3LV4 A;  4KCB A;  1VKD A;  3UGG A;  5GLP A;  1W18 A;  4QQS A;  3P2N A;  5FMC A;  3KST A;  5FMB A;  3ZXJ A;  3WPY A;  4O8P A;  3C7G A;  4FFG A;  1YIF A;  1Y9M A;  2AC1 A;  5A7V A;  3AKH A;  3ZXL A;  3AKF A;  3QEE A;  5JOY A;  3BYK A;  3VSF A;  5A7V B;  3CU9 A;  2ADE A;  2EXK A;  1YI7 A;  2QQV A;  3OM6 A;  5ANN A;  2X8F A;  3AKG A;  4D47 A;  5AYE A;  3WPZ A;  4O8N A;  5AYD A;  4UDG A;  4AK7 A;  1GYH A;  4AK6 A;  2VDT A;  5FMD A;  2AEZ A;  3WMY A;  4O8O A;  3VSZ A;  3OM2 A;  5AYC A;  4MLG A;  4UDK E;  3LEM A;  5GLQ A; 
#chains in the Genus database with same CATH topology
 3AKI A;  3WAS A;  3BYJ A;  4U6B A;  4U6D A;  5GLK A;  3LFI A;  5A8D A;  3LIG A;  2X8S A;  3C7O A;  1W2T A;  1Y4W A;  4KC8 A;  1UYP A;  5B6S A;  3QEF A;  3VT2 A;  3WPU A;  5GLL A;  3WN1 A;  3QZ4 A;  5FIX A;  4AK5 A;  3BYN A;  3VT1 A;  1ST8 A;  3D5Y A;  4FFI A;  2B4W A;  4PVI A;  3VSS A;  3WN0 A;  3C2U A;  3UGF A;  4UDK A;  3NQH A;  4N1I A;  3D60 A;  3C7H A;  5FK8 A;  3C7F A;  5FKC A;  4FFH A;  3TAW A;  1GYE B;  2EXI A;  5JOW A;  4KCA A;  5FLW A;  5GLN A;  4FFF A;  1YRZ A;  2YFR A;  5C2M A;  4N2Z A;  3OM7 A;  1OYG A;  2XQR A;  5FK7 A;  3R4Z A;  3PIJ A;  3D61 A;  4UDI A;  4UDJ A;  3U14 A;  4EQV A;  4N4B A;  3WPV A;  1PT2 A;  5FKB A;  3KF3 A;  5JOZ A;  3LDR A;  4N2R A;  4KMI A;  3SC7 X;  5GLR A;  3LDK A;  2X8T A;  1UV4 A;  1Y7B A;  3BYL A;  1WL7 A;  2EXH A;  3KF5 A;  5GLO A;  3R4Y A;  3LIH A;  5AY9 A;  2YFT A;  3C7E A;  5C0P A;  4PVA A;  3OM5 A;  3WAU A;  3WMZ A;  2AEY A;  3WN2 A;  2QQU A;  3QED A;  1TL2 A;  1GYD B;  3OM4 A;  4KC7 A;  4COT A;  3RWK X;  4ONZ A;  2QQW A;  3LF7 A;  1Y9G A;  3WAT A;  5JOX A;  3K1U A;  3R67 A;  4NOV A;  3QC2 A;  3U75 A;  2YFS A;  3D5Z A;  2OXB A;  5A8C A;  3PIG A;  3ZXK A;  3VT0 A;  3UGH A;  2ADD A;  2EXJ A;  3VSR A;  5B6T A;  5GLM A;  3LV4 A;  4KCB A;  1VKD A;  3UGG A;  5GLP A;  1W18 A;  4QQS A;  3P2N A;  5FMC A;  3KST A;  5FMB A;  3ZXJ A;  3WPY A;  4O8P A;  3C7G A;  4FFG A;  1YIF A;  1Y9M A;  2AC1 A;  5A7V A;  3AKH A;  3ZXL A;  3AKF A;  3QEE A;  5JOY A;  3BYK A;  3VSF A;  5A7V B;  3CU9 A;  2ADE A;  2EXK A;  1YI7 A;  2QQV A;  3OM6 A;  5ANN A;  2X8F A;  3AKG A;  4D47 A;  5AYE A;  3WPZ A;  4O8N A;  5AYD A;  4UDG A;  4AK7 A;  1GYH A;  4AK6 A;  2VDT A;  5FMD A;  2AEZ A;  3WMY A;  4O8O A;  3VSZ A;  3OM2 A;  5AYC A;  4MLG A;  4UDK E;  3LEM A;  5GLQ A; 
#chains in the Genus database with same CATH homology
 3AKI A;  3WAS A;  3BYJ A;  4U6B A;  4U6D A;  5GLK A;  3LFI A;  5A8D A;  3LIG A;  2X8S A;  3C7O A;  1W2T A;  1Y4W A;  4KC8 A;  1UYP A;  5B6S A;  3QEF A;  3VT2 A;  3WPU A;  5GLL A;  3WN1 A;  3QZ4 A;  5FIX A;  4AK5 A;  3BYN A;  3VT1 A;  1ST8 A;  3D5Y A;  4FFI A;  2B4W A;  4PVI A;  3VSS A;  3WN0 A;  3C2U A;  3UGF A;  4UDK A;  3NQH A;  4N1I A;  3D60 A;  3C7H A;  5FK8 A;  3C7F A;  5FKC A;  4FFH A;  3TAW A;  1GYE B;  2EXI A;  5JOW A;  4KCA A;  5FLW A;  5GLN A;  4FFF A;  1YRZ A;  2YFR A;  4N2Z A;  3OM7 A;  1OYG A;  2XQR A;  5FK7 A;  3R4Z A;  3PIJ A;  3D61 A;  4UDI A;  4UDJ A;  3U14 A;  4EQV A;  4N4B A;  3WPV A;  1PT2 A;  5FKB A;  3KF3 A;  5JOZ A;  3LDR A;  4N2R A;  4KMI A;  3SC7 X;  5GLR A;  3LDK A;  2X8T A;  1UV4 A;  1Y7B A;  3BYL A;  1WL7 A;  2EXH A;  3KF5 A;  5GLO A;  3R4Y A;  3LIH A;  5AY9 A;  2YFT A;  3C7E A;  5C0P A;  4PVA A;  3OM5 A;  3WAU A;  3WMZ A;  2AEY A;  3WN2 A;  2QQU A;  3QED A;  1GYD B;  3OM4 A;  4KC7 A;  4COT A;  3RWK X;  4ONZ A;  2QQW A;  3LF7 A;  1Y9G A;  3WAT A;  5JOX A;  3K1U A;  3R67 A;  4NOV A;  3QC2 A;  3U75 A;  2YFS A;  3D5Z A;  2OXB A;  5A8C A;  3PIG A;  3ZXK A;  3VT0 A;  3UGH A;  2ADD A;  2EXJ A;  3VSR A;  5B6T A;  5GLM A;  3LV4 A;  4KCB A;  1VKD A;  3UGG A;  5GLP A;  1W18 A;  4QQS A;  3P2N A;  5FMC A;  3KST A;  5FMB A;  3ZXJ A;  3WPY A;  4O8P A;  3C7G A;  4FFG A;  1YIF A;  1Y9M A;  2AC1 A;  5A7V A;  3AKH A;  3ZXL A;  3AKF A;  3QEE A;  5JOY A;  3BYK A;  3VSF A;  5A7V B;  3CU9 A;  2ADE A;  2EXK A;  1YI7 A;  2QQV A;  3OM6 A;  5ANN A;  2X8F A;  3AKG A;  4D47 A;  5AYE A;  3WPZ A;  4O8N A;  5AYD A;  4UDG A;  4AK7 A;  1GYH A;  4AK6 A;  2VDT A;  5FMD A;  2AEZ A;  3WMY A;  4O8O A;  3VSZ A;  3OM2 A;  5AYC A;  4MLG A;  4UDK E;  3LEM A;  5GLQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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