4D47A

X-ray structure of the levansucrase from erwinia amylovora
Total Genus 120
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
120
sequence length
411
structure length
411
Chain Sequence
YNYKPTLWTRADALKVHEDDPTTTQPVIDIAFPVMSEEVFIWDTMPLRDFDGEIISVNGWCIIFTLTADRNTDNPQFQDENGNYDITRDWEDRHGRARICYWYSRTGKDWIFGGRVMAEGVSPTTREWAGTPILLNDRGDIDLYYTCVTPGATIAKVRGKIVTSDQSVSLEGFQQVTSLFSADGTIYQTEEQNAFWNFRDPSPFIDRNDGKLYMLFEGNVAGPRGSHEITQAEMGNVPPGYEDVGGAKYQAGCVGLAVAKDLSGSEWQILPPLITAVGVNDQTERPHFVFQDGKYYLFTISHKYTFADNLTGPDGVYGFVSDKLTGPYTPMNSSGLVLGNPSSQPFQTYSHYVMPNGLVTSFIDSVPWKGKDYRIGGTEAPTVKILLKGDRSFIVDSFDYGYIPAMKDITL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords LEVANSUCRASE
publication title The Crystal Structure of Erwinia Amylovora Levansucrase Provides a Snapshot of the Products of Sucrose Hydrolysis Trapped Into the Active Site.
pubmed doi rcsb
source organism Erwinia amylovora
total genus 120
structure length 411
sequence length 411
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 2.4.1.10: Levansucrase.
pdb deposition date 2014-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02435 Glyco_hydro_68 Levansucrase/Invertase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 4d47A00
3WASA 3R4YA 4QQSA 5JOZA 4UDKE 3LDRA 5GLRA 3ZXKA 1W2TA 5A8DA 3C7OA 1WL7A 3LDKA 4FFHA 5FLWA 4KMIA 3RWKX 2YFRA 3BYNA 1YRZA 4PVAA 3BYJA 3OM7A 1YI7A 3QZ4A 3U75A 1Y9MA 3UGFA 3OM6A 5C0PA 3R67A 4N2ZA 2XQRA 4O8OA 5B6TA 1YIFA 3D60A 5GLNA 1Y4WA 4KC8A 5JOYA 5AYDA 3D61A 2QQVA 3WMYA 5FKBA 4O8NA 4PVIA 5ANNA 3VSSA 5FKCA 3WN1A 4N1IA 4NOVA 5AYEA 1ST8A 3QEEA 2X8FA 5FMCA 4D47A 4UDJA 3C2UA 3BYKA 3D5YA 4UDGA 3KF5A 3QEFA 4N4BA 3AKIA 3QC2A 3C7EA 1VKDA 2X8TA 5GLPA 3UGHA 3PIGA 5A7VA 3VSFA 3WN2A 3VT0A 1UYPA 3C7GA 3QEDA 3CU9A 3LIGA 3KSTA 3AKGA 3WATA 2QQUA 3VT1A 3VSRA 5FMBA 2YFTA 5GLMA 4U6BA 2X8SA 3UGGA 3WAUA 4UDIA 2AEZA 3ZXLA 3SC7X 2AC1A 2AEYA 2EXJA 1GYDB 3BYLA 4KC7A 3AKHA 3C7HA 5A7VB 5JOXA 3TAWA 3C7FA 4FFFA 4UDKA 4AK5A 3WMZA 5GLLA 3KF3A 5JOWA 4AK7A 4KCBA 5GLQA 5GLKA 5FK7A 3WPZA 3LEMA 3NQHA 3AKFA 4COTA 2B4WA 5GLOA 2YFSA 5AY9A 1OYGA 5FK8A 3LV4A 2ADEA 3OM5A 3WPVA 3R4ZA 1Y9GA 5AYCA 1GYEB 4AK6A 3WPUA 2EXKA 2EXIA 4FFGA 3WN0A 3LF7A 5A8CA 3OM4A 3K1UA 1Y7BA 1UV4A 2EXHA 2ADDA 5FMDA 2OXBA 4KCAA 3ZXJA 3OM2A 4O8PA 2QQWA 4MLGA 4U6DA 3WPYA 1W18A 3VSZA 1PT2A 2VDTA 4ONZA 4FFIA 3U14A 5B6SA 3VT2A 1GYHA 3PIJA 4N2RA 5FIXA 3D5ZA 3LIHA 4EQVA 3LFIA 3P2NA
chains in the Genus database with same CATH superfamily
3WASA 3R4YA 4QQSA 5JOZA 4UDKE 3LDRA 5GLRA 3ZXKA 1W2TA 5A8DA 3C7OA 1WL7A 3LDKA 5C2MA 4FFHA 5FLWA 4KMIA 3RWKX 2YFRA 3BYNA 1YRZA 4PVAA 3BYJA 3OM7A 1YI7A 3QZ4A 3U75A 1Y9MA 3UGFA 3OM6A 5C0PA 3R67A 4N2ZA 2XQRA 4O8OA 5B6TA 1YIFA 3D60A 5GLNA 1Y4WA 4KC8A 5JOYA 5AYDA 3D61A 2QQVA 3WMYA 5FKBA 4O8NA 4PVIA 5ANNA 3VSSA 5FKCA 3WN1A 4N1IA 4NOVA 5AYEA 1ST8A 3QEEA 2X8FA 5FMCA 4D47A 4UDJA 3C2UA 3BYKA 3D5YA 4UDGA 3KF5A 3QEFA 4N4BA 3AKIA 3QC2A 3C7EA 1VKDA 2X8TA 5GLPA 3UGHA 3PIGA 5A7VA 3VSFA 3WN2A 3VT0A 1UYPA 3C7GA 3QEDA 3CU9A 3LIGA 3KSTA 3AKGA 3WATA 2QQUA 3VT1A 3VSRA 5FMBA 2YFTA 5GLMA 4U6BA 2X8SA 3UGGA 3WAUA 4UDIA 2AEZA 3ZXLA 3SC7X 2AC1A 2AEYA 2EXJA 1GYDB 3BYLA 4KC7A 3AKHA 3C7HA 5A7VB 5JOXA 3TAWA 3C7FA 4FFFA 4UDKA 4AK5A 3WMZA 5GLLA 3KF3A 5JOWA 4AK7A 4KCBA 5GLQA 5GLKA 5FK7A 3WPZA 3LEMA 3NQHA 3AKFA 4COTA 2B4WA 5GLOA 2YFSA 5AY9A 1OYGA 5FK8A 3LV4A 2ADEA 3OM5A 3WPVA 3R4ZA 1Y9GA 5AYCA 1GYEB 4AK6A 3WPUA 2EXKA 2EXIA 4FFGA 3WN0A 3LF7A 5A8CA 3OM4A 3K1UA 1Y7BA 1UV4A 2EXHA 2ADDA 5FMDA 2OXBA 4KCAA 3ZXJA 3OM2A 4O8PA 2QQWA 4MLGA 4U6DA 3WPYA 1W18A 3VSZA 1PT2A 2VDTA 4ONZA 4FFIA 3U14A 5B6SA 3VT2A 1GYHA 3PIJA 4N2RA 5FIXA 1TL2A 3D5ZA 3LIHA 4EQVA 3LFIA 3P2NA
chains in the Genus database with same CATH topology
3WASA 3R4YA 4QQSA 5JOZA 4UDKE 3LDRA 5GLRA 3ZXKA 1W2TA 5A8DA 3C7OA 1WL7A 3LDKA 4FFHA 5FLWA 4KMIA 3RWKX 2YFRA 3BYNA 1YRZA 4PVAA 3BYJA 3OM7A 1YI7A 3QZ4A 3U75A 1Y9MA 3UGFA 3OM6A 5C0PA 3R67A 4N2ZA 2XQRA 4O8OA 5B6TA 1YIFA 3D60A 5GLNA 1Y4WA 4KC8A 5JOYA 5AYDA 3D61A 2QQVA 3WMYA 5FKBA 4O8NA 4PVIA 5ANNA 3VSSA 5FKCA 3WN1A 4N1IA 4NOVA 5AYEA 1ST8A 3QEEA 2X8FA 5FMCA 4D47A 4UDJA 3C2UA 3BYKA 3D5YA 4UDGA 3KF5A 3QEFA 4N4BA 3AKIA 3QC2A 3C7EA 1VKDA 2X8TA 5GLPA 3UGHA 3PIGA 5A7VA 3VSFA 3WN2A 3VT0A 1UYPA 3C7GA 3QEDA 3CU9A 3LIGA 3KSTA 3AKGA 3WATA 2QQUA 3VT1A 3VSRA 5FMBA 2YFTA 5GLMA 4U6BA 2X8SA 3UGGA 3WAUA 4UDIA 2AEZA 3ZXLA 3SC7X 2AC1A 2AEYA 2EXJA 1GYDB 3BYLA 4KC7A 3AKHA 3C7HA 5A7VB 5JOXA 3TAWA 3C7FA 4FFFA 4UDKA 4AK5A 3WMZA 5GLLA 3KF3A 5JOWA 4AK7A 4KCBA 5GLQA 5GLKA 5FK7A 3WPZA 3LEMA 3NQHA 3AKFA 4COTA 2B4WA 5GLOA 2YFSA 5AY9A 1OYGA 5FK8A 3LV4A 2ADEA 3OM5A 3WPVA 3R4ZA 1Y9GA 5AYCA 1GYEB 4AK6A 3WPUA 2EXKA 2EXIA 4FFGA 3WN0A 3LF7A 5A8CA 3OM4A 3K1UA 1Y7BA 1UV4A 2EXHA 2ADDA 5FMDA 2OXBA 4KCAA 3ZXJA 3OM2A 4O8PA 2QQWA 4MLGA 4U6DA 3WPYA 1W18A 3VSZA 1PT2A 2VDTA 4ONZA 4FFIA 3U14A 5B6SA 3VT2A 1GYHA 3PIJA 4N2RA 5FIXA 3D5ZA 3LIHA 4EQVA 3LFIA 3P2NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WAS A;  3R4Y A;  4QQS A;  5JOZ A;  4UDK E;  3LDR A;  5GLR A;  3ZXK A;  1W2T A;  5A8D A;  3C7O A;  1WL7 A;  3LDK A;  4FFH A;  5FLW A;  4KMI A;  3RWK X;  2YFR A;  3BYN A;  1YRZ A;  4PVA A;  3BYJ A;  3OM7 A;  1YI7 A;  3QZ4 A;  3U75 A;  1Y9M A;  3UGF A;  3OM6 A;  5C0P A;  3R67 A;  4N2Z A;  2XQR A;  4O8O A;  5B6T A;  1YIF A;  3D60 A;  5GLN A;  1Y4W A;  4KC8 A;  5JOY A;  5AYD A;  3D61 A;  2QQV A;  3WMY A;  5FKB A;  4O8N A;  4PVI A;  5ANN A;  3VSS A;  5FKC A;  3WN1 A;  4N1I A;  4NOV A;  5AYE A;  1ST8 A;  3QEE A;  2X8F A;  5FMC A;  4D47 A;  4UDJ A;  3C2U A;  3BYK A;  3D5Y A;  4UDG A;  3KF5 A;  3QEF A;  4N4B A;  3AKI A;  3QC2 A;  3C7E A;  1VKD A;  2X8T A;  5GLP A;  3UGH A;  3PIG A;  5A7V A;  3VSF A;  3WN2 A;  3VT0 A;  1UYP A;  3C7G A;  3QED A;  3CU9 A;  3LIG A;  3KST A;  3AKG A;  3WAT A;  2QQU A;  3VT1 A;  3VSR A;  5FMB A;  2YFT A;  5GLM A;  4U6B A;  2X8S A;  3UGG A;  3WAU A;  4UDI A;  2AEZ A;  3ZXL A;  3SC7 X;  2AC1 A;  2AEY A;  2EXJ A;  1GYD B;  3BYL A;  4KC7 A;  3AKH A;  3C7H A;  5A7V B;  5JOX A;  3TAW A;  3C7F A;  4FFF A;  4UDK A;  4AK5 A;  3WMZ A;  5GLL A;  3KF3 A;  5JOW A;  4AK7 A;  4KCB A;  5GLQ A;  5GLK A;  5FK7 A;  3WPZ A;  3LEM A;  3NQH A;  3AKF A;  4COT A;  2B4W A;  5GLO A;  2YFS A;  5AY9 A;  1OYG A;  5FK8 A;  3LV4 A;  2ADE A;  3OM5 A;  3WPV A;  3R4Z A;  1Y9G A;  5AYC A;  1GYE B;  4AK6 A;  3WPU A;  2EXK A;  2EXI A;  4FFG A;  3WN0 A;  3LF7 A;  5A8C A;  3OM4 A;  3K1U A;  1Y7B A;  1UV4 A;  2EXH A;  2ADD A;  5FMD A;  2OXB A;  4KCA A;  3ZXJ A;  3OM2 A;  4O8P A;  2QQW A;  4MLG A;  4U6D A;  3WPY A;  1W18 A;  3VSZ A;  1PT2 A;  2VDT A;  4ONZ A;  4FFI A;  3U14 A;  5B6S A;  3VT2 A;  1GYH A;  3PIJ A;  4N2R A;  5FIX A;  3D5Z A;  3LIH A;  4EQV A;  3LFI A;  3P2N A; 
#chains in the Genus database with same CATH topology
 3WAS A;  3R4Y A;  4QQS A;  5JOZ A;  4UDK E;  3LDR A;  5GLR A;  3ZXK A;  1W2T A;  5A8D A;  3C7O A;  1WL7 A;  3LDK A;  5C2M A;  4FFH A;  5FLW A;  4KMI A;  3RWK X;  2YFR A;  3BYN A;  1YRZ A;  4PVA A;  3BYJ A;  3OM7 A;  1YI7 A;  3QZ4 A;  3U75 A;  1Y9M A;  3UGF A;  3OM6 A;  5C0P A;  3R67 A;  4N2Z A;  2XQR A;  4O8O A;  5B6T A;  1YIF A;  3D60 A;  5GLN A;  1Y4W A;  4KC8 A;  5JOY A;  5AYD A;  3D61 A;  2QQV A;  3WMY A;  5FKB A;  4O8N A;  4PVI A;  5ANN A;  3VSS A;  5FKC A;  3WN1 A;  4N1I A;  4NOV A;  5AYE A;  1ST8 A;  3QEE A;  2X8F A;  5FMC A;  4D47 A;  4UDJ A;  3C2U A;  3BYK A;  3D5Y A;  4UDG A;  3KF5 A;  3QEF A;  4N4B A;  3AKI A;  3QC2 A;  3C7E A;  1VKD A;  2X8T A;  5GLP A;  3UGH A;  3PIG A;  5A7V A;  3VSF A;  3WN2 A;  3VT0 A;  1UYP A;  3C7G A;  3QED A;  3CU9 A;  3LIG A;  3KST A;  3AKG A;  3WAT A;  2QQU A;  3VT1 A;  3VSR A;  5FMB A;  2YFT A;  5GLM A;  4U6B A;  2X8S A;  3UGG A;  3WAU A;  4UDI A;  2AEZ A;  3ZXL A;  3SC7 X;  2AC1 A;  2AEY A;  2EXJ A;  1GYD B;  3BYL A;  4KC7 A;  3AKH A;  3C7H A;  5A7V B;  5JOX A;  3TAW A;  3C7F A;  4FFF A;  4UDK A;  4AK5 A;  3WMZ A;  5GLL A;  3KF3 A;  5JOW A;  4AK7 A;  4KCB A;  5GLQ A;  5GLK A;  5FK7 A;  3WPZ A;  3LEM A;  3NQH A;  3AKF A;  4COT A;  2B4W A;  5GLO A;  2YFS A;  5AY9 A;  1OYG A;  5FK8 A;  3LV4 A;  2ADE A;  3OM5 A;  3WPV A;  3R4Z A;  1Y9G A;  5AYC A;  1GYE B;  4AK6 A;  3WPU A;  2EXK A;  2EXI A;  4FFG A;  3WN0 A;  3LF7 A;  5A8C A;  3OM4 A;  3K1U A;  1Y7B A;  1UV4 A;  2EXH A;  2ADD A;  5FMD A;  2OXB A;  4KCA A;  3ZXJ A;  3OM2 A;  4O8P A;  2QQW A;  4MLG A;  4U6D A;  3WPY A;  1W18 A;  3VSZ A;  1PT2 A;  2VDT A;  4ONZ A;  4FFI A;  3U14 A;  5B6S A;  3VT2 A;  1GYH A;  3PIJ A;  4N2R A;  5FIX A;  1TL2 A;  3D5Z A;  3LIH A;  4EQV A;  3LFI A;  3P2N A; 
#chains in the Genus database with same CATH homology
 3WAS A;  3R4Y A;  4QQS A;  5JOZ A;  4UDK E;  3LDR A;  5GLR A;  3ZXK A;  1W2T A;  5A8D A;  3C7O A;  1WL7 A;  3LDK A;  4FFH A;  5FLW A;  4KMI A;  3RWK X;  2YFR A;  3BYN A;  1YRZ A;  4PVA A;  3BYJ A;  3OM7 A;  1YI7 A;  3QZ4 A;  3U75 A;  1Y9M A;  3UGF A;  3OM6 A;  5C0P A;  3R67 A;  4N2Z A;  2XQR A;  4O8O A;  5B6T A;  1YIF A;  3D60 A;  5GLN A;  1Y4W A;  4KC8 A;  5JOY A;  5AYD A;  3D61 A;  2QQV A;  3WMY A;  5FKB A;  4O8N A;  4PVI A;  5ANN A;  3VSS A;  5FKC A;  3WN1 A;  4N1I A;  4NOV A;  5AYE A;  1ST8 A;  3QEE A;  2X8F A;  5FMC A;  4D47 A;  4UDJ A;  3C2U A;  3BYK A;  3D5Y A;  4UDG A;  3KF5 A;  3QEF A;  4N4B A;  3AKI A;  3QC2 A;  3C7E A;  1VKD A;  2X8T A;  5GLP A;  3UGH A;  3PIG A;  5A7V A;  3VSF A;  3WN2 A;  3VT0 A;  1UYP A;  3C7G A;  3QED A;  3CU9 A;  3LIG A;  3KST A;  3AKG A;  3WAT A;  2QQU A;  3VT1 A;  3VSR A;  5FMB A;  2YFT A;  5GLM A;  4U6B A;  2X8S A;  3UGG A;  3WAU A;  4UDI A;  2AEZ A;  3ZXL A;  3SC7 X;  2AC1 A;  2AEY A;  2EXJ A;  1GYD B;  3BYL A;  4KC7 A;  3AKH A;  3C7H A;  5A7V B;  5JOX A;  3TAW A;  3C7F A;  4FFF A;  4UDK A;  4AK5 A;  3WMZ A;  5GLL A;  3KF3 A;  5JOW A;  4AK7 A;  4KCB A;  5GLQ A;  5GLK A;  5FK7 A;  3WPZ A;  3LEM A;  3NQH A;  3AKF A;  4COT A;  2B4W A;  5GLO A;  2YFS A;  5AY9 A;  1OYG A;  5FK8 A;  3LV4 A;  2ADE A;  3OM5 A;  3WPV A;  3R4Z A;  1Y9G A;  5AYC A;  1GYE B;  4AK6 A;  3WPU A;  2EXK A;  2EXI A;  4FFG A;  3WN0 A;  3LF7 A;  5A8C A;  3OM4 A;  3K1U A;  1Y7B A;  1UV4 A;  2EXH A;  2ADD A;  5FMD A;  2OXB A;  4KCA A;  3ZXJ A;  3OM2 A;  4O8P A;  2QQW A;  4MLG A;  4U6D A;  3WPY A;  1W18 A;  3VSZ A;  1PT2 A;  2VDT A;  4ONZ A;  4FFI A;  3U14 A;  5B6S A;  3VT2 A;  1GYH A;  3PIJ A;  4N2R A;  5FIX A;  3D5Z A;  3LIH A;  4EQV A;  3LFI A;  3P2N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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