5A8DA

The high resolution structure of a novel alpha-l-arabinofuranosidase (ctgh43) from clostridium thermocellum atcc 27405
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
302
structure length
302
Chain Sequence
SAADYPIFSQRFTADPAAVVYNGRLYIYCSHDSDATPGQSTYNIPDITCISTDDLKNWTDHGEVFNAKRDSRWASVSWAPSIVYRNNKFYLYYGNGGNGIGVAVSDSPTGPFKDPLPGPLVSWNTPGVQPAQNMWLFDPGVFVDDDGQAYMYFGGNGQNNIRVIKLGNDMISTVGSAMTMSAPRFFEAAYMHKYNGKYYFSYASDFSQGASKIEYMMSDKPTTGFQYKGVILPQPPDNYSNNNHHAIVEYKGNWYVVYHNRTVAKQRGLDPVYQRNVCIDQMFYNADGTIKQVVPTVDGLKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular determinants of substrate specificity revealed by the structure of Clostridium thermocellum arabinofuranosidase 43A from glycosyl hydrolase family 43 subfamily 16.
pubmed doi rcsb
molecule tags Hydrolase
source organism Clostridium thermocellum
molecule keywords CARBOHYDRATE BINDING FAMILY 6
total genus 79
structure length 302
sequence length 302
ec nomenclature ec 3.2.1.55: Non-reducing end alpha-L-arabinofuranosidase.
pdb deposition date 2015-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04616 Glyco_hydro_43 Glycosyl hydrolases family 43
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 5a8dA00
3KF5A 5JOZA 1OYGA 3UGHA 3QEEA 5FMDA 2AEZA 4KC8A 5JOWA 3NQHA 3P2NA 1W18A 3AKIA 5JOXA 3C2UA 3C7EA 3AKFA 4FFGA 2VDTA 5FK8A 2EXHA 4PVAA 3WASA 4N2RA 3D5YA 3WATA 1GYHA 3WMZA 4COTA 2OXBA 3PIGA 3K1UA 4PVIA 3LV4A 4MLGA 3VT2A 4UDKA 3SC7X 3WPZA 5FMCA 3RWKX 5FLWA 4U6BA 3VSZA 3BYKA 2EXIA 3C7GA 3LIGA 5FK7A 1Y9GA 4FFIA 3R67A 3WPVA 4UDJA 5GLNA 2AC1A 3WPYA 5FMBA 1UYPA 3LF7A 4EQVA 5C0PA 3OM2A 5A7VB 3VSFA 4O8NA 3D61A 3QEFA 2QQVA 5GLOA 3OM5A 4N1IA 3C7OA 5FKCA 3LDRA 3U75A 3C7FA 1YRZA 3QZ4A 3D60A 1Y4WA 3LIHA 5A7VA 3PIJA 5GLPA 3VT0A 5B6SA 5A8CA 4N4BA 4O8OA 4UDGA 4AK5A 1YIFA 3WAUA 3C7HA 3OM7A 4KCBA 3BYNA 5A8DA 4D47A 3LEMA 1W2TA 1WL7A 3VT1A 3AKHA 5GLKA 4AK6A 4KCAA 5GLLA 5B6TA 2YFRA 5AYEA 3R4ZA 1YI7A 5FIXA 2QQWA 2AEYA 4KMIA 3QC2A 4UDKE 5GLRA 4QQSA 4KC7A 4NOVA 2QQUA 3WPUA 1Y9MA 4FFHA 1PT2A 5AYCA 4N2ZA 4ONZA 3UGFA 1UV4A 3VSSA 3TAWA 5JOYA 3LDKA 1ST8A 2B4WA 2EXJA 2X8FA 2YFSA 3BYLA 3UGGA 1GYEB 3AKGA 4AK7A 5AYDA 5AY9A 2YFTA 3CU9A 4FFFA 3LFIA 5GLMA 3KSTA 3OM4A 2X8TA 3WN0A 3WN1A 3ZXKA 5ANNA 3VSRA 3OM6A 4U6DA 4UDIA 2XQRA 3R4YA 2ADDA 2EXKA 4O8PA 5FKBA 1GYDB 2ADEA 3ZXLA 3QEDA 3BYJA 5GLQA 3WMYA 1Y7BA 3U14A 3WN2A 3D5ZA 3ZXJA 3KF3A 2X8SA 1VKDA
chains in the Genus database with same CATH superfamily
3KF5A 5JOZA 1OYGA 3UGHA 3QEEA 5FMDA 2AEZA 4KC8A 5JOWA 3NQHA 3P2NA 1W18A 3AKIA 5JOXA 3C2UA 3C7EA 3AKFA 4FFGA 2VDTA 5FK8A 2EXHA 4PVAA 3WASA 4N2RA 3D5YA 3WATA 1GYHA 3WMZA 4COTA 2OXBA 3PIGA 3K1UA 4PVIA 3LV4A 4MLGA 3VT2A 4UDKA 3SC7X 3WPZA 5FMCA 3RWKX 5FLWA 4U6BA 3VSZA 3BYKA 2EXIA 3C7GA 3LIGA 1TL2A 5FK7A 1Y9GA 4FFIA 3R67A 3WPVA 4UDJA 5GLNA 2AC1A 3WPYA 5FMBA 1UYPA 3LF7A 4EQVA 5C0PA 3OM2A 5A7VB 3VSFA 4O8NA 3D61A 3QEFA 2QQVA 5GLOA 3OM5A 4N1IA 3C7OA 5FKCA 3LDRA 3U75A 3C7FA 1YRZA 3QZ4A 3D60A 1Y4WA 3LIHA 5A7VA 3PIJA 5GLPA 3VT0A 5B6SA 5A8CA 4N4BA 4O8OA 4UDGA 4AK5A 1YIFA 3WAUA 3C7HA 3OM7A 4KCBA 3BYNA 5A8DA 4D47A 3LEMA 1W2TA 1WL7A 3VT1A 3AKHA 5GLKA 4AK6A 4KCAA 5GLLA 5B6TA 2YFRA 5AYEA 3R4ZA 1YI7A 5FIXA 2QQWA 2AEYA 4KMIA 3QC2A 4UDKE 5GLRA 4QQSA 4KC7A 4NOVA 2QQUA 3WPUA 1Y9MA 4FFHA 1PT2A 5AYCA 4N2ZA 4ONZA 3UGFA 1UV4A 3VSSA 3TAWA 5JOYA 3LDKA 1ST8A 2B4WA 2EXJA 2X8FA 2YFSA 3BYLA 3UGGA 1GYEB 3AKGA 4AK7A 5AYDA 5AY9A 2YFTA 3CU9A 4FFFA 3LFIA 5GLMA 3KSTA 3OM4A 2X8TA 3WN0A 3WN1A 3ZXKA 5ANNA 3VSRA 3OM6A 4U6DA 4UDIA 2XQRA 3R4YA 2ADDA 2EXKA 4O8PA 5FKBA 1GYDB 2ADEA 3ZXLA 3QEDA 3BYJA 5GLQA 3WMYA 1Y7BA 3U14A 3WN2A 3D5ZA 3ZXJA 5C2MA 3KF3A 2X8SA 1VKDA
chains in the Genus database with same CATH topology
3KF5A 5JOZA 1OYGA 3UGHA 3QEEA 5FMDA 2AEZA 4KC8A 5JOWA 3NQHA 3P2NA 1W18A 3AKIA 5JOXA 3C2UA 3C7EA 3AKFA 4FFGA 2VDTA 5FK8A 2EXHA 4PVAA 3WASA 4N2RA 3D5YA 3WATA 1GYHA 3WMZA 4COTA 2OXBA 3PIGA 3K1UA 4PVIA 3LV4A 4MLGA 3VT2A 4UDKA 3SC7X 3WPZA 5FMCA 3RWKX 5FLWA 4U6BA 3VSZA 3BYKA 2EXIA 3C7GA 3LIGA 5FK7A 1Y9GA 4FFIA 3R67A 3WPVA 4UDJA 5GLNA 2AC1A 3WPYA 5FMBA 1UYPA 3LF7A 4EQVA 5C0PA 3OM2A 5A7VB 3VSFA 4O8NA 3D61A 3QEFA 2QQVA 5GLOA 3OM5A 4N1IA 3C7OA 5FKCA 3LDRA 3U75A 3C7FA 1YRZA 3QZ4A 3D60A 1Y4WA 3LIHA 5A7VA 3PIJA 5GLPA 3VT0A 5B6SA 5A8CA 4N4BA 4O8OA 4UDGA 4AK5A 1YIFA 3WAUA 3C7HA 3OM7A 4KCBA 3BYNA 5A8DA 4D47A 3LEMA 1W2TA 1WL7A 3VT1A 3AKHA 5GLKA 4AK6A 4KCAA 5GLLA 5B6TA 2YFRA 5AYEA 3R4ZA 1YI7A 5FIXA 2QQWA 2AEYA 4KMIA 3QC2A 4UDKE 5GLRA 4QQSA 4KC7A 4NOVA 2QQUA 3WPUA 1Y9MA 4FFHA 1PT2A 5AYCA 4N2ZA 4ONZA 3UGFA 1UV4A 3VSSA 3TAWA 5JOYA 3LDKA 1ST8A 2B4WA 2EXJA 2X8FA 2YFSA 3BYLA 3UGGA 1GYEB 3AKGA 4AK7A 5AYDA 5AY9A 2YFTA 3CU9A 4FFFA 3LFIA 5GLMA 3KSTA 3OM4A 2X8TA 3WN0A 3WN1A 3ZXKA 5ANNA 3VSRA 3OM6A 4U6DA 4UDIA 2XQRA 3R4YA 2ADDA 2EXKA 4O8PA 5FKBA 1GYDB 2ADEA 3ZXLA 3QEDA 3BYJA 5GLQA 3WMYA 1Y7BA 3U14A 3WN2A 3D5ZA 3ZXJA 3KF3A 2X8SA 1VKDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KF5 A;  5JOZ A;  1OYG A;  3UGH A;  3QEE A;  5FMD A;  2AEZ A;  4KC8 A;  5JOW A;  3NQH A;  3P2N A;  1W18 A;  3AKI A;  5JOX A;  3C2U A;  3C7E A;  3AKF A;  4FFG A;  2VDT A;  5FK8 A;  2EXH A;  4PVA A;  3WAS A;  4N2R A;  3D5Y A;  3WAT A;  1GYH A;  3WMZ A;  4COT A;  2OXB A;  3PIG A;  3K1U A;  4PVI A;  3LV4 A;  4MLG A;  3VT2 A;  4UDK A;  3SC7 X;  3WPZ A;  5FMC A;  3RWK X;  5FLW A;  4U6B A;  3VSZ A;  3BYK A;  2EXI A;  3C7G A;  3LIG A;  5FK7 A;  1Y9G A;  4FFI A;  3R67 A;  3WPV A;  4UDJ A;  5GLN A;  2AC1 A;  3WPY A;  5FMB A;  1UYP A;  3LF7 A;  4EQV A;  5C0P A;  3OM2 A;  5A7V B;  3VSF A;  4O8N A;  3D61 A;  3QEF A;  2QQV A;  5GLO A;  3OM5 A;  4N1I A;  3C7O A;  5FKC A;  3LDR A;  3U75 A;  3C7F A;  1YRZ A;  3QZ4 A;  3D60 A;  1Y4W A;  3LIH A;  5A7V A;  3PIJ A;  5GLP A;  3VT0 A;  5B6S A;  5A8C A;  4N4B A;  4O8O A;  4UDG A;  4AK5 A;  1YIF A;  3WAU A;  3C7H A;  3OM7 A;  4KCB A;  3BYN A;  5A8D A;  4D47 A;  3LEM A;  1W2T A;  1WL7 A;  3VT1 A;  3AKH A;  5GLK A;  4AK6 A;  4KCA A;  5GLL A;  5B6T A;  2YFR A;  5AYE A;  3R4Z A;  1YI7 A;  5FIX A;  2QQW A;  2AEY A;  4KMI A;  3QC2 A;  4UDK E;  5GLR A;  4QQS A;  4KC7 A;  4NOV A;  2QQU A;  3WPU A;  1Y9M A;  4FFH A;  1PT2 A;  5AYC A;  4N2Z A;  4ONZ A;  3UGF A;  1UV4 A;  3VSS A;  3TAW A;  5JOY A;  3LDK A;  1ST8 A;  2B4W A;  2EXJ A;  2X8F A;  2YFS A;  3BYL A;  3UGG A;  1GYE B;  3AKG A;  4AK7 A;  5AYD A;  5AY9 A;  2YFT A;  3CU9 A;  4FFF A;  3LFI A;  5GLM A;  3KST A;  3OM4 A;  2X8T A;  3WN0 A;  3WN1 A;  3ZXK A;  5ANN A;  3VSR A;  3OM6 A;  4U6D A;  4UDI A;  2XQR A;  3R4Y A;  2ADD A;  2EXK A;  4O8P A;  5FKB A;  1GYD B;  2ADE A;  3ZXL A;  3QED A;  3BYJ A;  5GLQ A;  3WMY A;  1Y7B A;  3U14 A;  3WN2 A;  3D5Z A;  3ZXJ A;  3KF3 A;  2X8S A;  1VKD A; 
#chains in the Genus database with same CATH topology
 3KF5 A;  5JOZ A;  1OYG A;  3UGH A;  3QEE A;  5FMD A;  2AEZ A;  4KC8 A;  5JOW A;  3NQH A;  3P2N A;  1W18 A;  3AKI A;  5JOX A;  3C2U A;  3C7E A;  3AKF A;  4FFG A;  2VDT A;  5FK8 A;  2EXH A;  4PVA A;  3WAS A;  4N2R A;  3D5Y A;  3WAT A;  1GYH A;  3WMZ A;  4COT A;  2OXB A;  3PIG A;  3K1U A;  4PVI A;  3LV4 A;  4MLG A;  3VT2 A;  4UDK A;  3SC7 X;  3WPZ A;  5FMC A;  3RWK X;  5FLW A;  4U6B A;  3VSZ A;  3BYK A;  2EXI A;  3C7G A;  3LIG A;  1TL2 A;  5FK7 A;  1Y9G A;  4FFI A;  3R67 A;  3WPV A;  4UDJ A;  5GLN A;  2AC1 A;  3WPY A;  5FMB A;  1UYP A;  3LF7 A;  4EQV A;  5C0P A;  3OM2 A;  5A7V B;  3VSF A;  4O8N A;  3D61 A;  3QEF A;  2QQV A;  5GLO A;  3OM5 A;  4N1I A;  3C7O A;  5FKC A;  3LDR A;  3U75 A;  3C7F A;  1YRZ A;  3QZ4 A;  3D60 A;  1Y4W A;  3LIH A;  5A7V A;  3PIJ A;  5GLP A;  3VT0 A;  5B6S A;  5A8C A;  4N4B A;  4O8O A;  4UDG A;  4AK5 A;  1YIF A;  3WAU A;  3C7H A;  3OM7 A;  4KCB A;  3BYN A;  5A8D A;  4D47 A;  3LEM A;  1W2T A;  1WL7 A;  3VT1 A;  3AKH A;  5GLK A;  4AK6 A;  4KCA A;  5GLL A;  5B6T A;  2YFR A;  5AYE A;  3R4Z A;  1YI7 A;  5FIX A;  2QQW A;  2AEY A;  4KMI A;  3QC2 A;  4UDK E;  5GLR A;  4QQS A;  4KC7 A;  4NOV A;  2QQU A;  3WPU A;  1Y9M A;  4FFH A;  1PT2 A;  5AYC A;  4N2Z A;  4ONZ A;  3UGF A;  1UV4 A;  3VSS A;  3TAW A;  5JOY A;  3LDK A;  1ST8 A;  2B4W A;  2EXJ A;  2X8F A;  2YFS A;  3BYL A;  3UGG A;  1GYE B;  3AKG A;  4AK7 A;  5AYD A;  5AY9 A;  2YFT A;  3CU9 A;  4FFF A;  3LFI A;  5GLM A;  3KST A;  3OM4 A;  2X8T A;  3WN0 A;  3WN1 A;  3ZXK A;  5ANN A;  3VSR A;  3OM6 A;  4U6D A;  4UDI A;  2XQR A;  3R4Y A;  2ADD A;  2EXK A;  4O8P A;  5FKB A;  1GYD B;  2ADE A;  3ZXL A;  3QED A;  3BYJ A;  5GLQ A;  3WMY A;  1Y7B A;  3U14 A;  3WN2 A;  3D5Z A;  3ZXJ A;  5C2M A;  3KF3 A;  2X8S A;  1VKD A; 
#chains in the Genus database with same CATH homology
 3KF5 A;  5JOZ A;  1OYG A;  3UGH A;  3QEE A;  5FMD A;  2AEZ A;  4KC8 A;  5JOW A;  3NQH A;  3P2N A;  1W18 A;  3AKI A;  5JOX A;  3C2U A;  3C7E A;  3AKF A;  4FFG A;  2VDT A;  5FK8 A;  2EXH A;  4PVA A;  3WAS A;  4N2R A;  3D5Y A;  3WAT A;  1GYH A;  3WMZ A;  4COT A;  2OXB A;  3PIG A;  3K1U A;  4PVI A;  3LV4 A;  4MLG A;  3VT2 A;  4UDK A;  3SC7 X;  3WPZ A;  5FMC A;  3RWK X;  5FLW A;  4U6B A;  3VSZ A;  3BYK A;  2EXI A;  3C7G A;  3LIG A;  5FK7 A;  1Y9G A;  4FFI A;  3R67 A;  3WPV A;  4UDJ A;  5GLN A;  2AC1 A;  3WPY A;  5FMB A;  1UYP A;  3LF7 A;  4EQV A;  5C0P A;  3OM2 A;  5A7V B;  3VSF A;  4O8N A;  3D61 A;  3QEF A;  2QQV A;  5GLO A;  3OM5 A;  4N1I A;  3C7O A;  5FKC A;  3LDR A;  3U75 A;  3C7F A;  1YRZ A;  3QZ4 A;  3D60 A;  1Y4W A;  3LIH A;  5A7V A;  3PIJ A;  5GLP A;  3VT0 A;  5B6S A;  5A8C A;  4N4B A;  4O8O A;  4UDG A;  4AK5 A;  1YIF A;  3WAU A;  3C7H A;  3OM7 A;  4KCB A;  3BYN A;  5A8D A;  4D47 A;  3LEM A;  1W2T A;  1WL7 A;  3VT1 A;  3AKH A;  5GLK A;  4AK6 A;  4KCA A;  5GLL A;  5B6T A;  2YFR A;  5AYE A;  3R4Z A;  1YI7 A;  5FIX A;  2QQW A;  2AEY A;  4KMI A;  3QC2 A;  4UDK E;  5GLR A;  4QQS A;  4KC7 A;  4NOV A;  2QQU A;  3WPU A;  1Y9M A;  4FFH A;  1PT2 A;  5AYC A;  4N2Z A;  4ONZ A;  3UGF A;  1UV4 A;  3VSS A;  3TAW A;  5JOY A;  3LDK A;  1ST8 A;  2B4W A;  2EXJ A;  2X8F A;  2YFS A;  3BYL A;  3UGG A;  1GYE B;  3AKG A;  4AK7 A;  5AYD A;  5AY9 A;  2YFT A;  3CU9 A;  4FFF A;  3LFI A;  5GLM A;  3KST A;  3OM4 A;  2X8T A;  3WN0 A;  3WN1 A;  3ZXK A;  5ANN A;  3VSR A;  3OM6 A;  4U6D A;  4UDI A;  2XQR A;  3R4Y A;  2ADD A;  2EXK A;  4O8P A;  5FKB A;  1GYD B;  2ADE A;  3ZXL A;  3QED A;  3BYJ A;  5GLQ A;  3WMY A;  1Y7B A;  3U14 A;  3WN2 A;  3D5Z A;  3ZXJ A;  3KF3 A;  2X8S A;  1VKD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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