The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
69
|
sequence length |
284
|
structure length |
284
|
Chain Sequence |
ESFTIPVSSLRLRDPFILVDKKTSMYYLHFNNNLKIRVYKSKDLSTWKDEGYSFIAKSDFWGQQDFWAPDVYEYEGRYYLFTTFSNAGVKRGTSILVSDSPKGPFTPLVNKAITPSGWMCLDGSLYIDKEGNPWLLFCREWLETIDGEIYAQRLAKDLKTTEGDPYLLFKASEAPWVGSITSSGVTGNVTDAPFIYRLDDGKLIMLWSSFRKTDGKYAIGQAVSASGNVLGPWVQEPETLNSDDGGHAMVFKDLKGRLMISYHAPNSQTEHPVITPIYIKDGKF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The crystal structure of endo-arabinase from Bacteroides thetaiotaomicron VPI-5482
rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Bacteroides thetaiotaomicron (strain atcc 29148 / dsm 2079 / nctc 10582 / e50 /
|
| molecule keywords |
Endo-arabinase
|
| total genus |
69
|
| structure length |
284
|
| sequence length |
284
|
| ec nomenclature | |
| pdb deposition date | 2015-06-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04616 | Glyco_hydro_43 | Glycosyl hydrolases family 43 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 5 Propeller | Tachylectin-2; Chain A | Glycosyl hydrolase domain; family 43 |
#chains in the Genus database with same CATH superfamily 5AY9 A; 2AC1 A; 1OYG A; 3WMY A; 3D5Z A; 3P2N A; 5A8D A; 5FK7 A; 3SC7 X; 4N2Z A; 3VT2 A; 3C7G A; 3WPY A; 3LDK A; 4UDG A; 3D61 A; 3BYL A; 3LEM A; 5GLL A; 2EXH A; 1VKD A; 3UGH A; 3RWK X; 4N1I A; 3LFI A; 3VSZ A; 5GLP A; 3U14 A; 3D60 A; 4KMI A; 2EXK A; 2EXI A; 4FFH A; 1GYD B; 4O8P A; 3WPV A; 4UDJ A; 3CU9 A; 3C7H A; 5AYC A; 3WPZ A; 4U6D A; 2YFS A; 2XQR A; 4FFI A; 3QED A; 3WAS A; 4FFG A; 5GLN A; 5JOW A; 4U6B A; 4O8N A; 5GLK A; 4MLG A; 2YFT A; 3OM2 A; 4AK7 A; 5A7V A; 2QQV A; 4PVA A; 3AKH A; 2VDT A; 3OM5 A; 5A8C A; 2AEY A; 3ZXJ A; 3VSF A; 3BYN A; 1Y9G A; 4EQV A; 3LIH A; 4NOV A; 5FLW A; 5GLR A; 5C0P A; 2EXJ A; 3PIJ A; 2OXB A; 4PVI A; 3WMZ A; 3BYK A; 3C2U A; 5FKC A; 3LV4 A; 1PT2 A; 3QC2 A; 3BYJ A; 3VT0 A; 5JOY A; 3QZ4 A; 2ADD A; 3QEE A; 3R67 A; 4ONZ A; 3WN0 A; 1YRZ A; 1ST8 A; 3C7F A; 1UYP A; 3KF3 A; 1YI7 A; 3WN2 A; 2QQU A; 3LDR A; 4AK5 A; 2ADE A; 3WAT A; 2B4W A; 2X8S A; 2AEZ A; 4UDI A; 4UDK E; 5AYE A; 5FMD A; 3PIG A; 5AYD A; 4O8O A; 1YIF A; 3R4Z A; 3OM6 A; 3VSS A; 3OM4 A; 5GLQ A; 3WPU A; 1GYH A; 3UGF A; 3VSR A; 4D47 A; 4KC8 A; 1UV4 A; 3WN1 A; 4QQS A; 4KCA A; 5B6T A; 2X8T A; 5GLO A; 5GLM A; 1Y9M A; 4AK6 A; 3AKI A; 4UDK A; 5FMC A; 1WL7 A; 3LF7 A; 3AKF A; 3VT1 A; 3AKG A; 3WAU A; 5JOZ A; 2QQW A; 1GYE B; 5JOX A; 3K1U A; 4N4B A; 2X8F A; 4FFF A; 3ZXL A; 5FK8 A; 5FIX A; 3NQH A; 3LIG A; 3TAW A; 2YFR A; 5FMB A; 3KF5 A; 3QEF A; 3ZXK A; 3OM7 A; 5A7V B; 3C7O A; 3R4Y A; 4KCB A; 4COT A; 3KST A; 4N2R A; 3D5Y A; 1Y7B A; 1Y4W A; 5FKB A; 3UGG A; 5B6S A; 5ANN A; 1W2T A; 3C7E A; 4KC7 A; 3U75 A; 1W18 A; #chains in the Genus database with same CATH topology 5AY9 A; 2AC1 A; 1OYG A; 3WMY A; 3D5Z A; 3P2N A; 5A8D A; 5FK7 A; 3SC7 X; 4N2Z A; 3VT2 A; 3C7G A; 1TL2 A; 3WPY A; 3LDK A; 4UDG A; 3D61 A; 3BYL A; 3LEM A; 5GLL A; 2EXH A; 1VKD A; 3UGH A; 3RWK X; 5C2M A; 4N1I A; 3LFI A; 3VSZ A; 5GLP A; 3U14 A; 3D60 A; 4KMI A; 2EXK A; 2EXI A; 4FFH A; 1GYD B; 4O8P A; 3WPV A; 4UDJ A; 3CU9 A; 3C7H A; 5AYC A; 3WPZ A; 4U6D A; 2YFS A; 2XQR A; 4FFI A; 3QED A; 3WAS A; 4FFG A; 5GLN A; 5JOW A; 4U6B A; 4O8N A; 5GLK A; 4MLG A; 2YFT A; 3OM2 A; 4AK7 A; 5A7V A; 2QQV A; 4PVA A; 3AKH A; 2VDT A; 3OM5 A; 5A8C A; 2AEY A; 3ZXJ A; 3VSF A; 3BYN A; 1Y9G A; 4EQV A; 3LIH A; 4NOV A; 5FLW A; 5GLR A; 5C0P A; 2EXJ A; 3PIJ A; 2OXB A; 4PVI A; 3WMZ A; 3BYK A; 3C2U A; 5FKC A; 3LV4 A; 1PT2 A; 3QC2 A; 3BYJ A; 3VT0 A; 5JOY A; 3QZ4 A; 2ADD A; 3QEE A; 3R67 A; 4ONZ A; 3WN0 A; 1YRZ A; 1ST8 A; 3C7F A; 1UYP A; 3KF3 A; 1YI7 A; 3WN2 A; 2QQU A; 3LDR A; 4AK5 A; 2ADE A; 3WAT A; 2B4W A; 2X8S A; 2AEZ A; 4UDI A; 4UDK E; 5AYE A; 5FMD A; 3PIG A; 5AYD A; 4O8O A; 1YIF A; 3R4Z A; 3OM6 A; 3VSS A; 3OM4 A; 5GLQ A; 3WPU A; 1GYH A; 3UGF A; 3VSR A; 4D47 A; 4KC8 A; 1UV4 A; 3WN1 A; 4QQS A; 4KCA A; 5B6T A; 2X8T A; 5GLO A; 5GLM A; 1Y9M A; 4AK6 A; 3AKI A; 4UDK A; 5FMC A; 1WL7 A; 3LF7 A; 3AKF A; 3VT1 A; 3AKG A; 3WAU A; 5JOZ A; 2QQW A; 1GYE B; 5JOX A; 3K1U A; 4N4B A; 2X8F A; 4FFF A; 3ZXL A; 5FK8 A; 5FIX A; 3NQH A; 3LIG A; 3TAW A; 2YFR A; 5FMB A; 3KF5 A; 3QEF A; 3ZXK A; 3OM7 A; 5A7V B; 3C7O A; 3R4Y A; 4KCB A; 4COT A; 3KST A; 4N2R A; 3D5Y A; 1Y7B A; 1Y4W A; 5FKB A; 3UGG A; 5B6S A; 5ANN A; 1W2T A; 3C7E A; 4KC7 A; 3U75 A; 1W18 A; #chains in the Genus database with same CATH homology 5AY9 A; 2AC1 A; 1OYG A; 3WMY A; 3D5Z A; 3P2N A; 5A8D A; 5FK7 A; 3SC7 X; 4N2Z A; 3VT2 A; 3C7G A; 3WPY A; 3LDK A; 4UDG A; 3D61 A; 3BYL A; 3LEM A; 5GLL A; 2EXH A; 1VKD A; 3UGH A; 3RWK X; 4N1I A; 3LFI A; 3VSZ A; 5GLP A; 3U14 A; 3D60 A; 4KMI A; 2EXK A; 2EXI A; 4FFH A; 1GYD B; 4O8P A; 3WPV A; 4UDJ A; 3CU9 A; 3C7H A; 5AYC A; 3WPZ A; 4U6D A; 2YFS A; 2XQR A; 4FFI A; 3QED A; 3WAS A; 4FFG A; 5GLN A; 5JOW A; 4U6B A; 4O8N A; 5GLK A; 4MLG A; 2YFT A; 3OM2 A; 4AK7 A; 5A7V A; 2QQV A; 4PVA A; 3AKH A; 2VDT A; 3OM5 A; 5A8C A; 2AEY A; 3ZXJ A; 3VSF A; 3BYN A; 1Y9G A; 4EQV A; 3LIH A; 4NOV A; 5FLW A; 5GLR A; 5C0P A; 2EXJ A; 3PIJ A; 2OXB A; 4PVI A; 3WMZ A; 3BYK A; 3C2U A; 5FKC A; 3LV4 A; 1PT2 A; 3QC2 A; 3BYJ A; 3VT0 A; 5JOY A; 3QZ4 A; 2ADD A; 3QEE A; 3R67 A; 4ONZ A; 3WN0 A; 1YRZ A; 1ST8 A; 3C7F A; 1UYP A; 3KF3 A; 1YI7 A; 3WN2 A; 2QQU A; 3LDR A; 4AK5 A; 2ADE A; 3WAT A; 2B4W A; 2X8S A; 2AEZ A; 4UDI A; 4UDK E; 5AYE A; 5FMD A; 3PIG A; 5AYD A; 4O8O A; 1YIF A; 3R4Z A; 3OM6 A; 3VSS A; 3OM4 A; 5GLQ A; 3WPU A; 1GYH A; 3UGF A; 3VSR A; 4D47 A; 4KC8 A; 1UV4 A; 3WN1 A; 4QQS A; 4KCA A; 5B6T A; 2X8T A; 5GLO A; 5GLM A; 1Y9M A; 4AK6 A; 3AKI A; 4UDK A; 5FMC A; 1WL7 A; 3LF7 A; 3AKF A; 3VT1 A; 3AKG A; 3WAU A; 5JOZ A; 2QQW A; 1GYE B; 5JOX A; 3K1U A; 4N4B A; 2X8F A; 4FFF A; 3ZXL A; 5FK8 A; 5FIX A; 3NQH A; 3LIG A; 3TAW A; 2YFR A; 5FMB A; 3KF5 A; 3QEF A; 3ZXK A; 3OM7 A; 5A7V B; 3C7O A; 3R4Y A; 4KCB A; 4COT A; 3KST A; 4N2R A; 3D5Y A; 1Y7B A; 1Y4W A; 5FKB A; 3UGG A; 5B6S A; 5ANN A; 1W2T A; 3C7E A; 4KC7 A; 3U75 A; 1W18 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
