5A7VB

The gh130 family of mannoside phosphorylases contains glycoside hydrolases that target beta-1,2 mannosidic linkages in candida mannan
Total Genus 92

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
359
structure length
359
Chain Sequence
KKNVLPDWAFGGFERPQGANPVISPIENTKFYCPMTQDYVAWESNDTFNPAATLHDGKIVVLYRAEDKSGVGIGHRTSRLGYATSSDGIHFKREKTPVFYPDNDTQKKLEWPGGCEDPRIAVTAEGLYVMTYTQWNRHIPRLAIATSRNLKDWTKHGPAFAKAYDGKFFNLGCKSGSILTEVVNGKQVIKKIDGKYFMYWGEEHVFAATSEDLVNWTPYVNTDGSLRKLFSPRDGHFDSQLTECGPPAIYTPKGIVLLYNGKNSASRGDKRYTANVYAAGQALFDANDPTRFITRLDEPFFRPMDSFEKSGQYVDGTVFIEGMVYYKDKWYLYYGCADSKVGMAIYNPKKPAAADPLPA
5010015020025030035035030025020015010050
020406080Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII4 (298-301)TIV23 (350-353)S19 (301-309)TIV1 (44-47)TIV2 (66-69)TII1 (41-44)S2 (63-65)S3 (71-80)TVIII1 (46-49)S6 (117-118)TI2 (51-54)TI4 (59-62)TI3 (58-61)O1 (127-129)S1 (56-58)TVIII5 (324-327)TIV4 (79-82)TI13 (310-313)TVIb1 (135-138)TIV6 (112-115)S4 (83-91)AH2 (331-334)S8 (153-160)TII2 (97-100)S5 (103-110)TIV5 (110-113)3H1 (132-134)AH1 (187-192)S7 (139-147)TI5 (129-132)TIV10 (174-177)TIV9 (172-175)TI6 (148-151)TIV8 (161-164)TIV13 (216-219)S9 (165-172)S11 (201-208)S15 (241-243)TI9 (246-249)TIV11 (175-178)S10 (179-183)TI7 (183-186)TI8 (193-196)TIV12 (207-210)TI11 (289-292)S14 (231-235)TIV14 (226-229)TVIII2 (227-230)S12 (211-214)TIV15 (235-238)TIV16 (237-240)TII3 (258-261)TIV18 (261-264)TIV17 (253-256)S18 (279-288)S20 (317-320)TI10 (276-279)S17 (273-276)TI14 (313-316)TIV20 (290-293)TI12 (294-297)S22 (354-361)TIV21 (311-314)TVIII6 (336-339)S21 (343-351)TI15 (338-341)TIV22 (335-338)S16 (266-269)TVIII3 (295-298)S13 (221-225)TVIII4 (321-324)TI1 (31-34)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Bacteroides thetaiotaomicron
publication title The Gh130 Family of Mannoside Phosphorylases Contains Glycoside Hydrolases that Target Beta-1,2 Mannosidic Linkages in Candida Mannan
pubmed doi rcsb
molecule keywords PUTATIVE GLYCOSIDASE PH117-RELATED
total genus 92
structure length 359
sequence length 359
ec nomenclature
pdb deposition date 2015-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF04041 Glyco_hydro_130 beta-1,4-mannooligosaccharide phosphorylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 5a7vB00
4ONZA 3WPVA 3CU9A 2B4WA 3NQHA 5ANNA 2EXKA 4NOVA 3D5ZA 2QQUA 1WL7A 1W2TA 2YFRA 1YIFA 1Y9MA 5GLPA 1GYDB 2EXIA 3PIGA 3WASA 3WMZA 3VSZA 5AYCA 1PT2A 3OM5A 1Y7BA 4FFFA 5FMDA 4O8NA 2X8FA 3WN2A 5FMBA 3U75A 3RWKX 5FLWA 1GYEB 3PIJA 3WATA 2ADDA 5A8DA 2YFTA 3VSSA 1GYHA 3LIHA 3QZ4A 3TAWA 3D61A 2XQRA 4UDJA 5A7VB 2VDTA 1Y9GA 3WN0A 3OM4A 3UGGA 3ZXKA 3C7OA 4UDKA 3WN1A 2YFSA 5A8CA 4UDGA 5FIXA 3QEFA 3QC2A 4FFHA 4N4BA 1UYPA 5AYDA 3VSFA 3C7HA 3C7GA 3QEEA 4KC8A 4PVAA 5GLNA 3AKHA 3D5YA 5AYEA 5JOYA 3LDKA 3VT0A 4UDIA 3BYKA 4N2RA 4FFIA 4KMIA 1Y4WA 2QQVA 3OM2A 3D60A 3LEMA 3LF7A 3VT1A 2EXHA 1UV4A 4AK6A 5FKCA 2X8TA 1YI7A 4PVIA 3KF3A 4N2ZA 3ZXJA 5GLMA 3KF5A 4U6BA 3SC7X 3BYLA 3K1UA 3C7EA 2AEYA 4AK5A 3AKGA 3WAUA 3ZXLA 1OYGA 4UDKE 3VSRA 3R4ZA 4KCBA 4O8PA 5GLOA 5JOXA 4MLGA 5B6SA 3WMYA 4COTA 5GLQA 5FMCA 5GLRA 3WPZA 3LDRA 1VKDA 5FKBA 3QEDA 3OM7A 4KCAA 5AY9A 4U6DA 4AK7A 4KC7A 2X8SA 3R4YA 3LV4A 5FK7A 5FK8A 2AEZA 5GLKA 4D47A 4FFGA 1YRZA 5JOZA 5B6TA 3BYJA 2EXJA 2OXBA 4O8OA 3C7FA 1W18A 2AC1A 3P2NA 2QQWA 4EQVA 3LFIA 3VT2A 3UGFA 5A7VA 3AKIA 5C0PA 2ADEA 4N1IA 3BYNA 4QQSA 5GLLA 3UGHA 3LIGA 3R67A 5JOWA 3AKFA 3WPYA 1ST8A 3C2UA 3KSTA 3WPUA 3OM6A 3U14A
chains in the Genus database with same CATH superfamily
4ONZA 3WPVA 3CU9A 2B4WA 3NQHA 5ANNA 2EXKA 4NOVA 3D5ZA 2QQUA 1WL7A 1W2TA 2YFRA 1YIFA 1Y9MA 5GLPA 1GYDB 2EXIA 3PIGA 3WASA 3WMZA 3VSZA 5AYCA 1PT2A 3OM5A 1Y7BA 4FFFA 5FMDA 4O8NA 2X8FA 3WN2A 5FMBA 3U75A 3RWKX 5FLWA 1GYEB 3PIJA 3WATA 2ADDA 5A8DA 2YFTA 3VSSA 1GYHA 3LIHA 3QZ4A 3TAWA 3D61A 2XQRA 4UDJA 5A7VB 2VDTA 1Y9GA 3WN0A 3OM4A 3UGGA 3ZXKA 3C7OA 4UDKA 3WN1A 2YFSA 5A8CA 4UDGA 5FIXA 3QEFA 3QC2A 4FFHA 4N4BA 1UYPA 5AYDA 3VSFA 3C7HA 3C7GA 3QEEA 4KC8A 4PVAA 5GLNA 3AKHA 3D5YA 5AYEA 5JOYA 3LDKA 3VT0A 4UDIA 3BYKA 4N2RA 4FFIA 4KMIA 1Y4WA 2QQVA 3D60A 3LEMA 3LF7A 3OM2A 3VT1A 2EXHA 1UV4A 4AK6A 5FKCA 2X8TA 1YI7A 4PVIA 3KF3A 4N2ZA 3ZXJA 5GLMA 3KF5A 4U6BA 3SC7X 3BYLA 3K1UA 3C7EA 2AEYA 4AK5A 3AKGA 3WAUA 3ZXLA 1OYGA 4UDKE 3VSRA 3R4ZA 4KCBA 4O8PA 5GLOA 5JOXA 4MLGA 5B6SA 3WMYA 4COTA 5GLQA 5FMCA 5GLRA 3WPZA 3LDRA 1VKDA 5FKBA 3QEDA 3OM7A 4KCAA 5AY9A 4U6DA 5C2MA 4AK7A 4KC7A 2X8SA 1TL2A 3R4YA 3LV4A 5FK7A 5FK8A 2AEZA 5GLKA 4D47A 4FFGA 1YRZA 5JOZA 5B6TA 3BYJA 2EXJA 2OXBA 4O8OA 3C7FA 1W18A 2AC1A 3P2NA 2QQWA 4EQVA 3LFIA 3VT2A 3UGFA 5A7VA 3AKIA 5C0PA 2ADEA 4N1IA 3BYNA 4QQSA 5GLLA 3UGHA 3LIGA 3R67A 5JOWA 3AKFA 3WPYA 1ST8A 3C2UA 3KSTA 3WPUA 3OM6A 3U14A
chains in the Genus database with same CATH topology
4ONZA 3WPVA 3CU9A 2B4WA 3NQHA 5ANNA 2EXKA 4NOVA 3D5ZA 2QQUA 1WL7A 1W2TA 2YFRA 1YIFA 1Y9MA 5GLPA 1GYDB 2EXIA 3PIGA 3WASA 3WMZA 3VSZA 5AYCA 1PT2A 3OM5A 1Y7BA 4FFFA 5FMDA 4O8NA 2X8FA 3WN2A 5FMBA 3U75A 3RWKX 5FLWA 1GYEB 3PIJA 3WATA 2ADDA 5A8DA 2YFTA 3VSSA 1GYHA 3LIHA 3QZ4A 3TAWA 3D61A 2XQRA 4UDJA 5A7VB 2VDTA 1Y9GA 3WN0A 3OM4A 3UGGA 3ZXKA 3C7OA 4UDKA 3WN1A 2YFSA 5A8CA 4UDGA 5FIXA 3QEFA 3QC2A 4FFHA 4N4BA 1UYPA 5AYDA 3VSFA 3C7HA 3C7GA 3QEEA 4KC8A 4PVAA 5GLNA 3AKHA 3D5YA 5AYEA 5JOYA 3LDKA 3VT0A 4UDIA 3BYKA 4N2RA 4FFIA 4KMIA 1Y4WA 2QQVA 3OM2A 3D60A 3LEMA 3LF7A 3VT1A 2EXHA 1UV4A 4AK6A 5FKCA 2X8TA 1YI7A 4PVIA 3KF3A 4N2ZA 3ZXJA 5GLMA 3KF5A 4U6BA 3SC7X 3BYLA 3K1UA 3C7EA 2AEYA 4AK5A 3AKGA 3WAUA 3ZXLA 1OYGA 4UDKE 3VSRA 3R4ZA 4KCBA 4O8PA 5GLOA 5JOXA 4MLGA 5B6SA 3WMYA 4COTA 5GLQA 5FMCA 5GLRA 3WPZA 3LDRA 1VKDA 5FKBA 3QEDA 3OM7A 4KCAA 5AY9A 4U6DA 4AK7A 4KC7A 2X8SA 3R4YA 3LV4A 5FK7A 5FK8A 2AEZA 5GLKA 4D47A 4FFGA 1YRZA 5JOZA 5B6TA 3BYJA 2EXJA 2OXBA 4O8OA 3C7FA 1W18A 2AC1A 3P2NA 2QQWA 4EQVA 3LFIA 3VT2A 3UGFA 5A7VA 3AKIA 5C0PA 2ADEA 4N1IA 3BYNA 4QQSA 5GLLA 3UGHA 3LIGA 3R67A 5JOWA 3AKFA 3WPYA 1ST8A 3C2UA 3KSTA 3WPUA 3OM6A 3U14A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ONZ A;  3WPV A;  3CU9 A;  2B4W A;  3NQH A;  5ANN A;  2EXK A;  4NOV A;  3D5Z A;  2QQU A;  1WL7 A;  1W2T A;  2YFR A;  1YIF A;  1Y9M A;  5GLP A;  1GYD B;  2EXI A;  3PIG A;  3WAS A;  3WMZ A;  3VSZ A;  5AYC A;  1PT2 A;  3OM5 A;  1Y7B A;  4FFF A;  5FMD A;  4O8N A;  2X8F A;  3WN2 A;  5FMB A;  3U75 A;  3RWK X;  5FLW A;  1GYE B;  3PIJ A;  3WAT A;  2ADD A;  5A8D A;  2YFT A;  3VSS A;  1GYH A;  3LIH A;  3QZ4 A;  3TAW A;  3D61 A;  2XQR A;  4UDJ A;  5A7V B;  2VDT A;  1Y9G A;  3WN0 A;  3OM4 A;  3UGG A;  3ZXK A;  3C7O A;  4UDK A;  3WN1 A;  2YFS A;  5A8C A;  4UDG A;  5FIX A;  3QEF A;  3QC2 A;  4FFH A;  4N4B A;  1UYP A;  5AYD A;  3VSF A;  3C7H A;  3C7G A;  3QEE A;  4KC8 A;  4PVA A;  5GLN A;  3AKH A;  3D5Y A;  5AYE A;  5JOY A;  3LDK A;  3VT0 A;  4UDI A;  3BYK A;  4N2R A;  4FFI A;  4KMI A;  1Y4W A;  2QQV A;  3OM2 A;  3D60 A;  3LEM A;  3LF7 A;  3VT1 A;  2EXH A;  1UV4 A;  4AK6 A;  5FKC A;  2X8T A;  1YI7 A;  4PVI A;  3KF3 A;  4N2Z A;  3ZXJ A;  5GLM A;  3KF5 A;  4U6B A;  3SC7 X;  3BYL A;  3K1U A;  3C7E A;  2AEY A;  4AK5 A;  3AKG A;  3WAU A;  3ZXL A;  1OYG A;  4UDK E;  3VSR A;  3R4Z A;  4KCB A;  4O8P A;  5GLO A;  5JOX A;  4MLG A;  5B6S A;  3WMY A;  4COT A;  5GLQ A;  5FMC A;  5GLR A;  3WPZ A;  3LDR A;  1VKD A;  5FKB A;  3QED A;  3OM7 A;  4KCA A;  5AY9 A;  4U6D A;  4AK7 A;  4KC7 A;  2X8S A;  3R4Y A;  3LV4 A;  5FK7 A;  5FK8 A;  2AEZ A;  5GLK A;  4D47 A;  4FFG A;  1YRZ A;  5JOZ A;  5B6T A;  3BYJ A;  2EXJ A;  2OXB A;  4O8O A;  3C7F A;  1W18 A;  2AC1 A;  3P2N A;  2QQW A;  4EQV A;  3LFI A;  3VT2 A;  3UGF A;  5A7V A;  3AKI A;  5C0P A;  2ADE A;  4N1I A;  3BYN A;  4QQS A;  5GLL A;  3UGH A;  3LIG A;  3R67 A;  5JOW A;  3AKF A;  3WPY A;  1ST8 A;  3C2U A;  3KST A;  3WPU A;  3OM6 A;  3U14 A; 
#chains in the Genus database with same CATH topology
 4ONZ A;  3WPV A;  3CU9 A;  2B4W A;  3NQH A;  5ANN A;  2EXK A;  4NOV A;  3D5Z A;  2QQU A;  1WL7 A;  1W2T A;  2YFR A;  1YIF A;  1Y9M A;  5GLP A;  1GYD B;  2EXI A;  3PIG A;  3WAS A;  3WMZ A;  3VSZ A;  5AYC A;  1PT2 A;  3OM5 A;  1Y7B A;  4FFF A;  5FMD A;  4O8N A;  2X8F A;  3WN2 A;  5FMB A;  3U75 A;  3RWK X;  5FLW A;  1GYE B;  3PIJ A;  3WAT A;  2ADD A;  5A8D A;  2YFT A;  3VSS A;  1GYH A;  3LIH A;  3QZ4 A;  3TAW A;  3D61 A;  2XQR A;  4UDJ A;  5A7V B;  2VDT A;  1Y9G A;  3WN0 A;  3OM4 A;  3UGG A;  3ZXK A;  3C7O A;  4UDK A;  3WN1 A;  2YFS A;  5A8C A;  4UDG A;  5FIX A;  3QEF A;  3QC2 A;  4FFH A;  4N4B A;  1UYP A;  5AYD A;  3VSF A;  3C7H A;  3C7G A;  3QEE A;  4KC8 A;  4PVA A;  5GLN A;  3AKH A;  3D5Y A;  5AYE A;  5JOY A;  3LDK A;  3VT0 A;  4UDI A;  3BYK A;  4N2R A;  4FFI A;  4KMI A;  1Y4W A;  2QQV A;  3D60 A;  3LEM A;  3LF7 A;  3OM2 A;  3VT1 A;  2EXH A;  1UV4 A;  4AK6 A;  5FKC A;  2X8T A;  1YI7 A;  4PVI A;  3KF3 A;  4N2Z A;  3ZXJ A;  5GLM A;  3KF5 A;  4U6B A;  3SC7 X;  3BYL A;  3K1U A;  3C7E A;  2AEY A;  4AK5 A;  3AKG A;  3WAU A;  3ZXL A;  1OYG A;  4UDK E;  3VSR A;  3R4Z A;  4KCB A;  4O8P A;  5GLO A;  5JOX A;  4MLG A;  5B6S A;  3WMY A;  4COT A;  5GLQ A;  5FMC A;  5GLR A;  3WPZ A;  3LDR A;  1VKD A;  5FKB A;  3QED A;  3OM7 A;  4KCA A;  5AY9 A;  4U6D A;  5C2M A;  4AK7 A;  4KC7 A;  2X8S A;  1TL2 A;  3R4Y A;  3LV4 A;  5FK7 A;  5FK8 A;  2AEZ A;  5GLK A;  4D47 A;  4FFG A;  1YRZ A;  5JOZ A;  5B6T A;  3BYJ A;  2EXJ A;  2OXB A;  4O8O A;  3C7F A;  1W18 A;  2AC1 A;  3P2N A;  2QQW A;  4EQV A;  3LFI A;  3VT2 A;  3UGF A;  5A7V A;  3AKI A;  5C0P A;  2ADE A;  4N1I A;  3BYN A;  4QQS A;  5GLL A;  3UGH A;  3LIG A;  3R67 A;  5JOW A;  3AKF A;  3WPY A;  1ST8 A;  3C2U A;  3KST A;  3WPU A;  3OM6 A;  3U14 A; 
#chains in the Genus database with same CATH homology
 4ONZ A;  3WPV A;  3CU9 A;  2B4W A;  3NQH A;  5ANN A;  2EXK A;  4NOV A;  3D5Z A;  2QQU A;  1WL7 A;  1W2T A;  2YFR A;  1YIF A;  1Y9M A;  5GLP A;  1GYD B;  2EXI A;  3PIG A;  3WAS A;  3WMZ A;  3VSZ A;  5AYC A;  1PT2 A;  3OM5 A;  1Y7B A;  4FFF A;  5FMD A;  4O8N A;  2X8F A;  3WN2 A;  5FMB A;  3U75 A;  3RWK X;  5FLW A;  1GYE B;  3PIJ A;  3WAT A;  2ADD A;  5A8D A;  2YFT A;  3VSS A;  1GYH A;  3LIH A;  3QZ4 A;  3TAW A;  3D61 A;  2XQR A;  4UDJ A;  5A7V B;  2VDT A;  1Y9G A;  3WN0 A;  3OM4 A;  3UGG A;  3ZXK A;  3C7O A;  4UDK A;  3WN1 A;  2YFS A;  5A8C A;  4UDG A;  5FIX A;  3QEF A;  3QC2 A;  4FFH A;  4N4B A;  1UYP A;  5AYD A;  3VSF A;  3C7H A;  3C7G A;  3QEE A;  4KC8 A;  4PVA A;  5GLN A;  3AKH A;  3D5Y A;  5AYE A;  5JOY A;  3LDK A;  3VT0 A;  4UDI A;  3BYK A;  4N2R A;  4FFI A;  4KMI A;  1Y4W A;  2QQV A;  3OM2 A;  3D60 A;  3LEM A;  3LF7 A;  3VT1 A;  2EXH A;  1UV4 A;  4AK6 A;  5FKC A;  2X8T A;  1YI7 A;  4PVI A;  3KF3 A;  4N2Z A;  3ZXJ A;  5GLM A;  3KF5 A;  4U6B A;  3SC7 X;  3BYL A;  3K1U A;  3C7E A;  2AEY A;  4AK5 A;  3AKG A;  3WAU A;  3ZXL A;  1OYG A;  4UDK E;  3VSR A;  3R4Z A;  4KCB A;  4O8P A;  5GLO A;  5JOX A;  4MLG A;  5B6S A;  3WMY A;  4COT A;  5GLQ A;  5FMC A;  5GLR A;  3WPZ A;  3LDR A;  1VKD A;  5FKB A;  3QED A;  3OM7 A;  4KCA A;  5AY9 A;  4U6D A;  4AK7 A;  4KC7 A;  2X8S A;  3R4Y A;  3LV4 A;  5FK7 A;  5FK8 A;  2AEZ A;  5GLK A;  4D47 A;  4FFG A;  1YRZ A;  5JOZ A;  5B6T A;  3BYJ A;  2EXJ A;  2OXB A;  4O8O A;  3C7F A;  1W18 A;  2AC1 A;  3P2N A;  2QQW A;  4EQV A;  3LFI A;  3VT2 A;  3UGF A;  5A7V A;  3AKI A;  5C0P A;  2ADE A;  4N1I A;  3BYN A;  4QQS A;  5GLL A;  3UGH A;  3LIG A;  3R67 A;  5JOW A;  3AKF A;  3WPY A;  1ST8 A;  3C2U A;  3KST A;  3WPU A;  3OM6 A;  3U14 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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