The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
92
|
sequence length |
359
|
structure length |
359
|
Chain Sequence |
KKNVLPDWAFGGFERPQGANPVISPIENTKFYCPMTQDYVAWESNDTFNPAATLHDGKIVVLYRAEDKSGVGIGHRTSRLGYATSSDGIHFKREKTPVFYPDNDTQKKLEWPGGCEDPRIAVTAEGLYVMTYTQWNRHIPRLAIATSRNLKDWTKHGPAFAKAYDGKFFNLGCKSGSILTEVVNGKQVIKKIDGKYFMYWGEEHVFAATSEDLVNWTPYVNTDGSLRKLFSPRDGHFDSQLTECGPPAIYTPKGIVLLYNGKNSASRGDKRYTANVYAAGQALFDANDPTRFITRLDEPFFRPMDSFEKSGQYVDGTVFIEGMVYYKDKWYLYYGCADSKVGMAIYNPKKPAAADPLPA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Gh130 Family of Mannoside Phosphorylases Contains Glycoside Hydrolases that Target Beta-1,2 Mannosidic Linkages in Candida Mannan
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Bacteroides thetaiotaomicron
|
| molecule keywords |
PUTATIVE GLYCOSIDASE PH117-RELATED
|
| total genus |
92
|
| structure length |
359
|
| sequence length |
359
|
| ec nomenclature | |
| pdb deposition date | 2015-07-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF04041 | Glyco_hydro_130 | beta-1,4-mannooligosaccharide phosphorylase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 5 Propeller | Tachylectin-2; Chain A | Glycosyl hydrolase domain; family 43 |
#chains in the Genus database with same CATH superfamily 1GYH A; 3KF5 A; 5AYD A; 2EXH A; 3VT2 A; 3VSZ A; 3C7O A; 5A7V B; 1YRZ A; 4PVA A; 4FFG A; 1Y7B A; 2EXI A; 3D60 A; 3BYK A; 4KC7 A; 1Y9G A; 4PVI A; 3AKH A; 5GLO A; 4UDK E; 5B6S A; 4COT A; 3WPV A; 4QQS A; 5GLQ A; 4UDG A; 2OXB A; 1OYG A; 5FLW A; 2YFS A; 5FKB A; 3VT0 A; 3PIG A; 4KC8 A; 3LV4 A; 1YI7 A; 5A7V A; 4UDJ A; 5AY9 A; 3VT1 A; 1PT2 A; 5JOW A; 5JOY A; 3UGH A; 1WL7 A; 4ONZ A; 3VSS A; 2EXJ A; 5FMC A; 3C7E A; 5FK8 A; 3WN1 A; 3U75 A; 1GYE B; 3ZXJ A; 2X8F A; 3D5Y A; 5GLM A; 2XQR A; 3TAW A; 5JOX A; 5GLR A; 2X8S A; 1W18 A; 2YFR A; 1UYP A; 2AEY A; 3AKF A; 3C2U A; 3LDK A; 3PIJ A; 3QC2 A; 4N4B A; 3R67 A; 1Y9M A; 3WAS A; 3KF3 A; 3SC7 X; 4AK6 A; 3WAU A; 3C7H A; 3VSR A; 2ADE A; 3C7F A; 4KMI A; 4AK5 A; 2VDT A; 5A8C A; 4D47 A; 3WPY A; 3QEF A; 3KST A; 3R4Z A; 3LIG A; 3LF7 A; 5GLN A; 3OM4 A; 4UDK A; 3ZXL A; 5FKC A; 3D5Z A; 5GLL A; 3CU9 A; 5ANN A; 3U14 A; 5FMD A; 3WMY A; 3BYL A; 3UGF A; 3LDR A; 4N2R A; 3WPU A; 1VKD A; 3C7G A; 3NQH A; 3OM5 A; 3P2N A; 3RWK X; 3LEM A; 4FFF A; 2QQU A; 3AKG A; 4N2Z A; 3WN0 A; 4MLG A; 3AKI A; 5C0P A; 2AEZ A; 3UGG A; 1ST8 A; 4U6D A; 3LFI A; 3OM2 A; 5GLP A; 3D61 A; 3BYN A; 3OM6 A; 3R4Y A; 4UDI A; 4N1I A; 3WN2 A; 4FFI A; 3WPZ A; 5GLK A; 4KCA A; 3QEE A; 5AYC A; 2B4W A; 1GYD B; 2ADD A; 2QQV A; 2X8T A; 1W2T A; 5FMB A; 3ZXK A; 1UV4 A; 5A8D A; 3LIH A; 5B6T A; 1Y4W A; 4AK7 A; 4KCB A; 4O8O A; 3QZ4 A; 4FFH A; 5FIX A; 4NOV A; 4O8P A; 2EXK A; 3QED A; 3K1U A; 5FK7 A; 3BYJ A; 1YIF A; 5JOZ A; 3WMZ A; 3OM7 A; 4O8N A; 4EQV A; 2QQW A; 4U6B A; 2AC1 A; 2YFT A; 3WAT A; 3VSF A; 5AYE A; #chains in the Genus database with same CATH topology 1GYH A; 3KF5 A; 5AYD A; 2EXH A; 3VT2 A; 3VSZ A; 3C7O A; 5A7V B; 1YRZ A; 4PVA A; 4FFG A; 1Y7B A; 2EXI A; 3D60 A; 3BYK A; 4KC7 A; 1Y9G A; 4PVI A; 3AKH A; 5GLO A; 5C2M A; 4UDK E; 5B6S A; 4COT A; 3WPV A; 4QQS A; 5GLQ A; 4UDG A; 2OXB A; 1OYG A; 5FLW A; 2YFS A; 5FKB A; 3VT0 A; 3PIG A; 4KC8 A; 3LV4 A; 1YI7 A; 5A7V A; 4UDJ A; 5AY9 A; 3VT1 A; 1PT2 A; 5JOW A; 5JOY A; 3UGH A; 1WL7 A; 4ONZ A; 3VSS A; 2EXJ A; 5FMC A; 3C7E A; 5FK8 A; 3WN1 A; 3U75 A; 1GYE B; 3ZXJ A; 2X8F A; 3D5Y A; 5GLM A; 2XQR A; 3TAW A; 5JOX A; 5GLR A; 2X8S A; 1W18 A; 2YFR A; 1UYP A; 2AEY A; 3AKF A; 3C2U A; 3LDK A; 3PIJ A; 3QC2 A; 4N4B A; 3R67 A; 1Y9M A; 3WAS A; 3KF3 A; 3SC7 X; 4AK6 A; 3WAU A; 3C7H A; 3VSR A; 2ADE A; 3C7F A; 4KMI A; 4AK5 A; 2VDT A; 5A8C A; 4D47 A; 3WPY A; 3QEF A; 3KST A; 3R4Z A; 3LIG A; 3LF7 A; 5GLN A; 3OM4 A; 4UDK A; 3ZXL A; 5FKC A; 3D5Z A; 5GLL A; 3CU9 A; 5ANN A; 3U14 A; 5FMD A; 3WMY A; 3BYL A; 3UGF A; 3LDR A; 4N2R A; 3WPU A; 1VKD A; 3C7G A; 3NQH A; 3OM5 A; 3P2N A; 3RWK X; 3LEM A; 4FFF A; 2QQU A; 3AKG A; 4N2Z A; 3WN0 A; 4MLG A; 3AKI A; 5C0P A; 2AEZ A; 3UGG A; 1ST8 A; 4U6D A; 3LFI A; 3OM2 A; 5GLP A; 3D61 A; 3BYN A; 3OM6 A; 3R4Y A; 4UDI A; 4N1I A; 3WN2 A; 4FFI A; 3WPZ A; 5GLK A; 4KCA A; 3QEE A; 5AYC A; 2B4W A; 1GYD B; 2ADD A; 2QQV A; 2X8T A; 1W2T A; 5FMB A; 3ZXK A; 1UV4 A; 5A8D A; 3LIH A; 5B6T A; 1Y4W A; 4AK7 A; 4KCB A; 4O8O A; 3QZ4 A; 4FFH A; 5FIX A; 4NOV A; 4O8P A; 2EXK A; 3QED A; 3K1U A; 5FK7 A; 3BYJ A; 1YIF A; 5JOZ A; 3WMZ A; 1TL2 A; 3OM7 A; 4O8N A; 4EQV A; 2QQW A; 4U6B A; 2AC1 A; 2YFT A; 3WAT A; 3VSF A; 5AYE A; #chains in the Genus database with same CATH homology 1GYH A; 3KF5 A; 5AYD A; 2EXH A; 3VT2 A; 3VSZ A; 3C7O A; 5A7V B; 1YRZ A; 4PVA A; 4FFG A; 1Y7B A; 2EXI A; 3D60 A; 3BYK A; 4KC7 A; 1Y9G A; 4PVI A; 3AKH A; 5GLO A; 4UDK E; 5B6S A; 4COT A; 3WPV A; 4QQS A; 5GLQ A; 4UDG A; 2OXB A; 1OYG A; 5FLW A; 2YFS A; 5FKB A; 3VT0 A; 3PIG A; 4KC8 A; 3LV4 A; 1YI7 A; 5A7V A; 4UDJ A; 5AY9 A; 3VT1 A; 1PT2 A; 5JOW A; 5JOY A; 3UGH A; 1WL7 A; 4ONZ A; 3VSS A; 2EXJ A; 5FMC A; 3C7E A; 5FK8 A; 3WN1 A; 3U75 A; 1GYE B; 3ZXJ A; 2X8F A; 3D5Y A; 5GLM A; 2XQR A; 3TAW A; 5JOX A; 5GLR A; 2X8S A; 1W18 A; 2YFR A; 1UYP A; 2AEY A; 3AKF A; 3C2U A; 3LDK A; 3PIJ A; 3QC2 A; 4N4B A; 3R67 A; 1Y9M A; 3WAS A; 3KF3 A; 3SC7 X; 4AK6 A; 3WAU A; 3C7H A; 3VSR A; 2ADE A; 3C7F A; 4KMI A; 4AK5 A; 2VDT A; 5A8C A; 4D47 A; 3WPY A; 3QEF A; 3KST A; 3R4Z A; 3LIG A; 3LF7 A; 5GLN A; 3OM4 A; 4UDK A; 3ZXL A; 5FKC A; 3D5Z A; 5GLL A; 3CU9 A; 5ANN A; 3U14 A; 5FMD A; 3WMY A; 3BYL A; 3UGF A; 3LDR A; 4N2R A; 3WPU A; 1VKD A; 3C7G A; 3NQH A; 3OM5 A; 3P2N A; 3RWK X; 3LEM A; 4FFF A; 2QQU A; 3AKG A; 4N2Z A; 3WN0 A; 4MLG A; 3AKI A; 5C0P A; 2AEZ A; 3UGG A; 1ST8 A; 4U6D A; 3LFI A; 3OM2 A; 5GLP A; 3D61 A; 3BYN A; 3OM6 A; 3R4Y A; 4UDI A; 4N1I A; 3WN2 A; 4FFI A; 3WPZ A; 5GLK A; 4KCA A; 3QEE A; 5AYC A; 2B4W A; 1GYD B; 2ADD A; 2QQV A; 2X8T A; 1W2T A; 5FMB A; 3ZXK A; 1UV4 A; 5A8D A; 3LIH A; 5B6T A; 1Y4W A; 4AK7 A; 4KCB A; 4O8O A; 3QZ4 A; 4FFH A; 5FIX A; 4NOV A; 4O8P A; 2EXK A; 3QED A; 3K1U A; 5FK7 A; 3BYJ A; 1YIF A; 5JOZ A; 3WMZ A; 3OM7 A; 4O8N A; 4EQV A; 2QQW A; 4U6B A; 2AC1 A; 2YFT A; 3WAT A; 3VSF A; 5AYE A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
