5A8CA

The ultra high resolution structure of a novel alpha-l-arabinofuranosidase (ctgh43) from clostridium thermocellum atcc 27405 with bound trimethyl n-oxide (trs)
Total Genus 81

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
299
structure length
299
Chain Sequence
ADYPIFSQRFTADPAAVVYNGRLYIYCSHDSDATPGQSTYNIPDITCISTDDLKNWTDHGEVFNAKRDSRWASVSWAPSIVYRNNKFYLYYGNGGNGIGVAVSDSPTGPFKDPLPGPLVSWNTPGVQPAQNMWLFDPGVFVDDDGQAYMYFGGNGQNNIRVIKLGNDMISTVGSAMTMSAPRFFEAAYMHKYNGKYYFSYASDFSQGASKIEYMMSDKPTTGFQYKGVILPQPPDNYSNNNHHAIVEYKGNWYVVYHNRTVAKQRGLDPVYQRNVCIDQMFYNADGTIKQVVPTVDGLK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (52-60)TVIII5 (246-249)TIV2 (48-51)TIV1 (32-35)TVIII1 (34-37)TVIII2 (37-40)S1 (40-49)S3 (74-80)TII1 (64-67)S5 (106-113)TIV3 (80-83)TIV4 (82-85)S4 (86-94)TIV5 (99-102)S8 (168-171)TI3 (96-99)TIV6 (112-115)S6 (116-122)TIV8 (122-125)TI'2 (123-126)TI6 (172-175)TIV10 (159-162)S7 (128-133)TIV9 (156-159)TII2 (153-156)TI5 (150-153)TVIII3 (133-136)TI7 (185-188)TI4 (135-138)TVIII4 (147-150)TI8 (195-198)O1 (163-165)S12 (213-222)S9 (177-182)TIV11 (197-200)TII3 (210-213)S14 (241-246)S10 (189-194)S17 (281-288)TIV12 (221-224)AH1 (290-295)S13 (225-232)TIV13 (234-237)TIV14 (263-266)S15 (254-260)TI9 (248-251)TIV16 (277-280)TIV15 (266-269)TVIII6 (258-261)S16 (273-278)TI1 (94-97)TI2 (95-98)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Clostridium thermocellum
publication title Molecular determinants of substrate specificity revealed by the structure of Clostridium thermocellum arabinofuranosidase 43A from glycosyl hydrolase family 43 subfamily 16.
pubmed doi rcsb
molecule keywords CARBOHYDRATE BINDING FAMILY 6
total genus 81
structure length 299
sequence length 299
ec nomenclature ec 3.2.1.55: Non-reducing end alpha-L-arabinofuranosidase.
pdb deposition date 2015-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04616 Glyco_hydro_43 Glycosyl hydrolases family 43
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 5a8cA00
1YI7A 3WPVA 3R4ZA 1OYGA 3D61A 3OM4A 3BYJA 3KSTA 3TAWA 5A8DA 2ADEA 5AY9A 4PVIA 4KC8A 4AK5A 5FKCA 3WN1A 2AEZA 5FMDA 3VT1A 5JOZA 4O8NA 5GLMA 1PT2A 4N4BA 4COTA 4QQSA 3LF7A 2QQUA 3ZXKA 3U14A 3VSFA 3OM6A 5C0PA 2EXIA 1VKDA 5FLWA 1GYDB 3RWKX 4UDKA 4MLGA 2AC1A 1UV4A 5GLLA 3WPUA 3NQHA 5JOXA 3ZXLA 4FFGA 1Y9GA 4KMIA 3VT2A 5GLRA 3WPYA 2AEYA 3R4YA 4KCBA 5FK7A 3C7FA 5A7VA 3LFIA 3QEDA 3C7HA 3WATA 4AK6A 1Y7BA 4O8PA 3D5YA 4UDKE 3QZ4A 2X8FA 3AKHA 5AYDA 3U75A 3VT0A 4U6DA 3LDRA 3LIHA 5ANNA 3QC2A 4KC7A 5A8CA 3KF3A 1W2TA 2YFTA 5FMBA 5GLKA 5FMCA 1GYHA 4KCAA 3SC7X 3C7EA 3CU9A 5FK8A 5FIXA 2X8TA 3WMZA 3WN0A 4EQVA 4FFIA 4PVAA 3QEEA 1WL7A 2X8SA 4N2RA 3C2UA 4ONZA 3LIGA 5FKBA 3UGHA 5JOWA 3UGFA 4N2ZA 3BYKA 3AKIA 1ST8A 3C7OA 3PIJA 3VSZA 2ADDA 5GLPA 4FFHA 1YRZA 3AKGA 3R67A 3P2NA 4D47A 2XQRA 2B4WA 3AKFA 5A7VB 3BYLA 2EXHA 2YFRA 3OM5A 3QEFA 5GLQA 3UGGA 3LDKA 2OXBA 3WMYA 1Y9MA 1YIFA 4UDJA 1UYPA 4UDIA 1Y4WA 2EXJA 3WPZA 3K1UA 3PIGA 3ZXJA 3VSSA 5B6TA 4NOVA 3OM2A 2YFSA 4UDGA 3WN2A 3D60A 3C7GA 2EXKA 5JOYA 4FFFA 3OM7A 3KF5A 5GLOA 1W18A 1GYEB 5GLNA 4AK7A 5AYEA 5B6SA 4N1IA 3WASA 5AYCA 3WAUA 3LV4A 3LEMA 2QQVA 4O8OA 4U6BA 2VDTA 3D5ZA 3BYNA 2QQWA 3VSRA
chains in the Genus database with same CATH superfamily
1YI7A 3WPVA 3R4ZA 1OYGA 3D61A 3OM4A 3BYJA 3KSTA 3TAWA 5A8DA 2ADEA 5AY9A 4PVIA 4KC8A 4AK5A 5FKCA 3WN1A 2AEZA 5FMDA 3VT1A 5JOZA 4O8NA 5GLMA 1PT2A 4N4BA 4COTA 4QQSA 3LF7A 2QQUA 3ZXKA 3U14A 3VSFA 3OM6A 5C0PA 2EXIA 1VKDA 5FLWA 1GYDB 3RWKX 4UDKA 4MLGA 2AC1A 1UV4A 5GLLA 3WPUA 3NQHA 5JOXA 3ZXLA 4FFGA 1Y9GA 4KMIA 3VT2A 5GLRA 3WPYA 2AEYA 3R4YA 4KCBA 5FK7A 3C7FA 5A7VA 3LFIA 3QEDA 3C7HA 3WATA 4AK6A 1Y7BA 4O8PA 3D5YA 4UDKE 3QZ4A 2X8FA 3AKHA 5AYDA 3U75A 3VT0A 4U6DA 3LDRA 3LIHA 5ANNA 3QC2A 4KC7A 5A8CA 3KF3A 1W2TA 2YFTA 5FMBA 5GLKA 5FMCA 1GYHA 4KCAA 3SC7X 3C7EA 3CU9A 5FK8A 5FIXA 2X8TA 3WMZA 3WN0A 4EQVA 4FFIA 4PVAA 3QEEA 5C2MA 1WL7A 2X8SA 4N2RA 3C2UA 4ONZA 3LIGA 5FKBA 3UGHA 5JOWA 3UGFA 4N2ZA 3BYKA 3AKIA 1ST8A 3C7OA 3PIJA 3VSZA 2ADDA 5GLPA 4FFHA 1TL2A 1YRZA 3AKGA 3R67A 3P2NA 4D47A 2XQRA 2B4WA 3AKFA 5A7VB 3BYLA 2EXHA 2YFRA 3OM5A 3QEFA 5GLQA 3UGGA 3LDKA 2OXBA 3WMYA 1Y9MA 1YIFA 4UDJA 1UYPA 4UDIA 1Y4WA 2EXJA 3WPZA 3K1UA 3PIGA 3ZXJA 3VSSA 5B6TA 4NOVA 3OM2A 2YFSA 4UDGA 3WN2A 3D60A 3C7GA 2EXKA 5JOYA 4FFFA 3OM7A 3KF5A 5GLOA 1W18A 1GYEB 5GLNA 4AK7A 5AYEA 5B6SA 4N1IA 3WASA 5AYCA 3WAUA 3LV4A 3LEMA 2QQVA 4O8OA 4U6BA 2VDTA 3D5ZA 3BYNA 2QQWA 3VSRA
chains in the Genus database with same CATH topology
1YI7A 3WPVA 3R4ZA 1OYGA 3D61A 3OM4A 3BYJA 3KSTA 3TAWA 5A8DA 2ADEA 5AY9A 4PVIA 4KC8A 4AK5A 5FKCA 3WN1A 2AEZA 5FMDA 3VT1A 5JOZA 4O8NA 5GLMA 1PT2A 4N4BA 4COTA 4QQSA 3LF7A 2QQUA 3ZXKA 3U14A 3VSFA 3OM6A 5C0PA 2EXIA 1VKDA 5FLWA 1GYDB 3RWKX 4UDKA 4MLGA 2AC1A 1UV4A 5GLLA 3WPUA 3NQHA 5JOXA 3ZXLA 4FFGA 1Y9GA 4KMIA 3VT2A 5GLRA 3WPYA 2AEYA 3R4YA 4KCBA 5FK7A 3C7FA 5A7VA 3LFIA 3QEDA 3C7HA 3WATA 4AK6A 1Y7BA 4O8PA 3D5YA 4UDKE 3QZ4A 2X8FA 3AKHA 5AYDA 3U75A 3VT0A 4U6DA 3LDRA 3LIHA 5ANNA 3QC2A 4KC7A 5A8CA 3KF3A 1W2TA 2YFTA 5FMBA 5GLKA 5FMCA 1GYHA 4KCAA 3SC7X 3C7EA 3CU9A 5FK8A 5FIXA 2X8TA 3WMZA 3WN0A 4EQVA 4FFIA 4PVAA 3QEEA 1WL7A 2X8SA 4N2RA 3C2UA 4ONZA 3LIGA 5FKBA 3UGHA 5JOWA 3UGFA 4N2ZA 3BYKA 3AKIA 1ST8A 3C7OA 3PIJA 3VSZA 2ADDA 5GLPA 4FFHA 1YRZA 3AKGA 3R67A 3P2NA 4D47A 2XQRA 2B4WA 3AKFA 5A7VB 3BYLA 2EXHA 2YFRA 3OM5A 3QEFA 5GLQA 3UGGA 3LDKA 2OXBA 3WMYA 1Y9MA 1YIFA 4UDJA 1UYPA 4UDIA 1Y4WA 2EXJA 3WPZA 3K1UA 3PIGA 3ZXJA 3VSSA 5B6TA 4NOVA 3OM2A 2YFSA 4UDGA 3WN2A 3D60A 3C7GA 2EXKA 5JOYA 4FFFA 3OM7A 3KF5A 5GLOA 1W18A 1GYEB 5GLNA 4AK7A 5AYEA 5B6SA 4N1IA 3WASA 5AYCA 3WAUA 3LV4A 3LEMA 2QQVA 4O8OA 4U6BA 2VDTA 3D5ZA 3BYNA 2QQWA 3VSRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YI7 A;  3WPV A;  3R4Z A;  1OYG A;  3D61 A;  3OM4 A;  3BYJ A;  3KST A;  3TAW A;  5A8D A;  2ADE A;  5AY9 A;  4PVI A;  4KC8 A;  4AK5 A;  5FKC A;  3WN1 A;  2AEZ A;  5FMD A;  3VT1 A;  5JOZ A;  4O8N A;  5GLM A;  1PT2 A;  4N4B A;  4COT A;  4QQS A;  3LF7 A;  2QQU A;  3ZXK A;  3U14 A;  3VSF A;  3OM6 A;  5C0P A;  2EXI A;  1VKD A;  5FLW A;  1GYD B;  3RWK X;  4UDK A;  4MLG A;  2AC1 A;  1UV4 A;  5GLL A;  3WPU A;  3NQH A;  5JOX A;  3ZXL A;  4FFG A;  1Y9G A;  4KMI A;  3VT2 A;  5GLR A;  3WPY A;  2AEY A;  3R4Y A;  4KCB A;  5FK7 A;  3C7F A;  5A7V A;  3LFI A;  3QED A;  3C7H A;  3WAT A;  4AK6 A;  1Y7B A;  4O8P A;  3D5Y A;  4UDK E;  3QZ4 A;  2X8F A;  3AKH A;  5AYD A;  3U75 A;  3VT0 A;  4U6D A;  3LDR A;  3LIH A;  5ANN A;  3QC2 A;  4KC7 A;  5A8C A;  3KF3 A;  1W2T A;  2YFT A;  5FMB A;  5GLK A;  5FMC A;  1GYH A;  4KCA A;  3SC7 X;  3C7E A;  3CU9 A;  5FK8 A;  5FIX A;  2X8T A;  3WMZ A;  3WN0 A;  4EQV A;  4FFI A;  4PVA A;  3QEE A;  1WL7 A;  2X8S A;  4N2R A;  3C2U A;  4ONZ A;  3LIG A;  5FKB A;  3UGH A;  5JOW A;  3UGF A;  4N2Z A;  3BYK A;  3AKI A;  1ST8 A;  3C7O A;  3PIJ A;  3VSZ A;  2ADD A;  5GLP A;  4FFH A;  1YRZ A;  3AKG A;  3R67 A;  3P2N A;  4D47 A;  2XQR A;  2B4W A;  3AKF A;  5A7V B;  3BYL A;  2EXH A;  2YFR A;  3OM5 A;  3QEF A;  5GLQ A;  3UGG A;  3LDK A;  2OXB A;  3WMY A;  1Y9M A;  1YIF A;  4UDJ A;  1UYP A;  4UDI A;  1Y4W A;  2EXJ A;  3WPZ A;  3K1U A;  3PIG A;  3ZXJ A;  3VSS A;  5B6T A;  4NOV A;  3OM2 A;  2YFS A;  4UDG A;  3WN2 A;  3D60 A;  3C7G A;  2EXK A;  5JOY A;  4FFF A;  3OM7 A;  3KF5 A;  5GLO A;  1W18 A;  1GYE B;  5GLN A;  4AK7 A;  5AYE A;  5B6S A;  4N1I A;  3WAS A;  5AYC A;  3WAU A;  3LV4 A;  3LEM A;  2QQV A;  4O8O A;  4U6B A;  2VDT A;  3D5Z A;  3BYN A;  2QQW A;  3VSR A; 
#chains in the Genus database with same CATH topology
 1YI7 A;  3WPV A;  3R4Z A;  1OYG A;  3D61 A;  3OM4 A;  3BYJ A;  3KST A;  3TAW A;  5A8D A;  2ADE A;  5AY9 A;  4PVI A;  4KC8 A;  4AK5 A;  5FKC A;  3WN1 A;  2AEZ A;  5FMD A;  3VT1 A;  5JOZ A;  4O8N A;  5GLM A;  1PT2 A;  4N4B A;  4COT A;  4QQS A;  3LF7 A;  2QQU A;  3ZXK A;  3U14 A;  3VSF A;  3OM6 A;  5C0P A;  2EXI A;  1VKD A;  5FLW A;  1GYD B;  3RWK X;  4UDK A;  4MLG A;  2AC1 A;  1UV4 A;  5GLL A;  3WPU A;  3NQH A;  5JOX A;  3ZXL A;  4FFG A;  1Y9G A;  4KMI A;  3VT2 A;  5GLR A;  3WPY A;  2AEY A;  3R4Y A;  4KCB A;  5FK7 A;  3C7F A;  5A7V A;  3LFI A;  3QED A;  3C7H A;  3WAT A;  4AK6 A;  1Y7B A;  4O8P A;  3D5Y A;  4UDK E;  3QZ4 A;  2X8F A;  3AKH A;  5AYD A;  3U75 A;  3VT0 A;  4U6D A;  3LDR A;  3LIH A;  5ANN A;  3QC2 A;  4KC7 A;  5A8C A;  3KF3 A;  1W2T A;  2YFT A;  5FMB A;  5GLK A;  5FMC A;  1GYH A;  4KCA A;  3SC7 X;  3C7E A;  3CU9 A;  5FK8 A;  5FIX A;  2X8T A;  3WMZ A;  3WN0 A;  4EQV A;  4FFI A;  4PVA A;  3QEE A;  5C2M A;  1WL7 A;  2X8S A;  4N2R A;  3C2U A;  4ONZ A;  3LIG A;  5FKB A;  3UGH A;  5JOW A;  3UGF A;  4N2Z A;  3BYK A;  3AKI A;  1ST8 A;  3C7O A;  3PIJ A;  3VSZ A;  2ADD A;  5GLP A;  4FFH A;  1TL2 A;  1YRZ A;  3AKG A;  3R67 A;  3P2N A;  4D47 A;  2XQR A;  2B4W A;  3AKF A;  5A7V B;  3BYL A;  2EXH A;  2YFR A;  3OM5 A;  3QEF A;  5GLQ A;  3UGG A;  3LDK A;  2OXB A;  3WMY A;  1Y9M A;  1YIF A;  4UDJ A;  1UYP A;  4UDI A;  1Y4W A;  2EXJ A;  3WPZ A;  3K1U A;  3PIG A;  3ZXJ A;  3VSS A;  5B6T A;  4NOV A;  3OM2 A;  2YFS A;  4UDG A;  3WN2 A;  3D60 A;  3C7G A;  2EXK A;  5JOY A;  4FFF A;  3OM7 A;  3KF5 A;  5GLO A;  1W18 A;  1GYE B;  5GLN A;  4AK7 A;  5AYE A;  5B6S A;  4N1I A;  3WAS A;  5AYC A;  3WAU A;  3LV4 A;  3LEM A;  2QQV A;  4O8O A;  4U6B A;  2VDT A;  3D5Z A;  3BYN A;  2QQW A;  3VSR A; 
#chains in the Genus database with same CATH homology
 1YI7 A;  3WPV A;  3R4Z A;  1OYG A;  3D61 A;  3OM4 A;  3BYJ A;  3KST A;  3TAW A;  5A8D A;  2ADE A;  5AY9 A;  4PVI A;  4KC8 A;  4AK5 A;  5FKC A;  3WN1 A;  2AEZ A;  5FMD A;  3VT1 A;  5JOZ A;  4O8N A;  5GLM A;  1PT2 A;  4N4B A;  4COT A;  4QQS A;  3LF7 A;  2QQU A;  3ZXK A;  3U14 A;  3VSF A;  3OM6 A;  5C0P A;  2EXI A;  1VKD A;  5FLW A;  1GYD B;  3RWK X;  4UDK A;  4MLG A;  2AC1 A;  1UV4 A;  5GLL A;  3WPU A;  3NQH A;  5JOX A;  3ZXL A;  4FFG A;  1Y9G A;  4KMI A;  3VT2 A;  5GLR A;  3WPY A;  2AEY A;  3R4Y A;  4KCB A;  5FK7 A;  3C7F A;  5A7V A;  3LFI A;  3QED A;  3C7H A;  3WAT A;  4AK6 A;  1Y7B A;  4O8P A;  3D5Y A;  4UDK E;  3QZ4 A;  2X8F A;  3AKH A;  5AYD A;  3U75 A;  3VT0 A;  4U6D A;  3LDR A;  3LIH A;  5ANN A;  3QC2 A;  4KC7 A;  5A8C A;  3KF3 A;  1W2T A;  2YFT A;  5FMB A;  5GLK A;  5FMC A;  1GYH A;  4KCA A;  3SC7 X;  3C7E A;  3CU9 A;  5FK8 A;  5FIX A;  2X8T A;  3WMZ A;  3WN0 A;  4EQV A;  4FFI A;  4PVA A;  3QEE A;  1WL7 A;  2X8S A;  4N2R A;  3C2U A;  4ONZ A;  3LIG A;  5FKB A;  3UGH A;  5JOW A;  3UGF A;  4N2Z A;  3BYK A;  3AKI A;  1ST8 A;  3C7O A;  3PIJ A;  3VSZ A;  2ADD A;  5GLP A;  4FFH A;  1YRZ A;  3AKG A;  3R67 A;  3P2N A;  4D47 A;  2XQR A;  2B4W A;  3AKF A;  5A7V B;  3BYL A;  2EXH A;  2YFR A;  3OM5 A;  3QEF A;  5GLQ A;  3UGG A;  3LDK A;  2OXB A;  3WMY A;  1Y9M A;  1YIF A;  4UDJ A;  1UYP A;  4UDI A;  1Y4W A;  2EXJ A;  3WPZ A;  3K1U A;  3PIG A;  3ZXJ A;  3VSS A;  5B6T A;  4NOV A;  3OM2 A;  2YFS A;  4UDG A;  3WN2 A;  3D60 A;  3C7G A;  2EXK A;  5JOY A;  4FFF A;  3OM7 A;  3KF5 A;  5GLO A;  1W18 A;  1GYE B;  5GLN A;  4AK7 A;  5AYE A;  5B6S A;  4N1I A;  3WAS A;  5AYC A;  3WAU A;  3LV4 A;  3LEM A;  2QQV A;  4O8O A;  4U6B A;  2VDT A;  3D5Z A;  3BYN A;  2QQW A;  3VSR A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.