5A8CA

The ultra high resolution structure of a novel alpha-l-arabinofuranosidase (ctgh43) from clostridium thermocellum atcc 27405 with bound trimethyl n-oxide (trs)
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
299
structure length
299
Chain Sequence
ADYPIFSQRFTADPAAVVYNGRLYIYCSHDSDATPGQSTYNIPDITCISTDDLKNWTDHGEVFNAKRDSRWASVSWAPSIVYRNNKFYLYYGNGGNGIGVAVSDSPTGPFKDPLPGPLVSWNTPGVQPAQNMWLFDPGVFVDDDGQAYMYFGGNGQNNIRVIKLGNDMISTVGSAMTMSAPRFFEAAYMHKYNGKYYFSYASDFSQGASKIEYMMSDKPTTGFQYKGVILPQPPDNYSNNNHHAIVEYKGNWYVVYHNRTVAKQRGLDPVYQRNVCIDQMFYNADGTIKQVVPTVDGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords CARBOHYDRATE BINDING FAMILY 6
publication title Molecular determinants of substrate specificity revealed by the structure of Clostridium thermocellum arabinofuranosidase 43A from glycosyl hydrolase family 43 subfamily 16.
pubmed doi rcsb
source organism Clostridium thermocellum
total genus 81
structure length 299
sequence length 299
ec nomenclature ec 3.2.1.55: Non-reducing end alpha-L-arabinofuranosidase.
pdb deposition date 2015-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04616 Glyco_hydro_43 Glycosyl hydrolases family 43
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 5a8cA00
3WPUA 3LV4A 3VT0A 1Y9GA 3LIGA 3KF3A 3U14A 4UDKE 4UDGA 3OM6A 3UGFA 3LF7A 3LDRA 1ST8A 4N1IA 2YFTA 3U75A 5GLOA 3CU9A 3QEFA 5GLKA 3OM2A 3LEMA 5FK7A 4KC8A 3OM4A 3AKGA 3QEDA 5FKBA 3VSSA 3WMYA 3K1UA 3C7HA 5JOZA 3KF5A 4UDKA 5GLNA 3UGHA 3QEEA 1Y4WA 3C2UA 4N4BA 5A7VB 4QQSA 3WAUA 1UYPA 3BYNA 5FMDA 5GLPA 2XQRA 3PIGA 1Y9MA 3OM5A 1W18A 3AKHA 4UDIA 5FKCA 4PVIA 5C0PA 2YFSA 4KCAA 3QC2A 3PIJA 2AEYA 2AEZA 4MLGA 4UDJA 3R4ZA 1YI7A 5GLRA 3WN2A 3TAWA 5A8CA 4AK7A 3WATA 3C7FA 4COTA 3LDKA 5FMCA 3LFIA 3BYLA 2YFRA 3R4YA 5FK8A 2QQUA 4KCBA 3C7OA 2ADDA 5A8DA 4AK5A 3ZXLA 4N2RA 3NQHA 5B6SA 2ADEA 5JOYA 4KMIA 3D60A 3RWKX 5FMBA 1YRZA 3VT2A 3R67A 4U6DA 5ANNA 3BYKA 3BYJA 3D5YA 3WPYA 1GYDB 5A7VA 4O8NA 2QQWA 3P2NA 2VDTA 1GYEB 3D61A 5FIXA 5GLQA 2AC1A 3ZXJA 3WN0A 1PT2A 3WN1A 3WMZA 3VSRA 3WPVA 2B4WA 3C7GA 5JOWA 3VSFA 4FFGA 3VSZA 3KSTA 2EXHA 2QQVA 5JOXA 1W2TA 5AYEA 3WASA 5AYDA 2EXKA 3ZXKA 4O8OA 4FFIA 3WPZA 4ONZA 4N2ZA 5GLMA 4O8PA 3LIHA 2OXBA 2X8FA 2EXIA 2X8TA 4FFHA 2X8SA 3OM7A 3QZ4A 4U6BA 3VT1A 4KC7A 5FLWA 4AK6A 3AKFA 4NOVA 4FFFA 1UV4A 3AKIA 3D5ZA 3SC7X 4EQVA 5AY9A 4PVAA 1WL7A 1OYGA 1GYHA 1Y7BA 5AYCA 1YIFA 3C7EA 5GLLA 5B6TA 1VKDA 3UGGA 2EXJA 4D47A
chains in the Genus database with same CATH superfamily
3WPUA 3LV4A 3VT0A 1Y9GA 3LIGA 3KF3A 3U14A 4UDKE 4UDGA 3OM6A 3UGFA 3LF7A 3LDRA 1ST8A 4N1IA 2YFTA 3U75A 5GLOA 3CU9A 3QEFA 5GLKA 3OM2A 3LEMA 5FK7A 4KC8A 3OM4A 3AKGA 3QEDA 5FKBA 3VSSA 3WMYA 3K1UA 3C7HA 5JOZA 3KF5A 4UDKA 5GLNA 3UGHA 3QEEA 1Y4WA 3C2UA 4N4BA 5A7VB 4QQSA 3WAUA 1UYPA 3BYNA 5FMDA 5GLPA 2XQRA 3PIGA 1Y9MA 3OM5A 1W18A 3AKHA 4UDIA 5FKCA 4PVIA 5C0PA 2YFSA 4KCAA 3QC2A 3PIJA 2AEYA 2AEZA 4MLGA 4UDJA 3R4ZA 1YI7A 5GLRA 3WN2A 3TAWA 5A8CA 4AK7A 3WATA 3C7FA 4COTA 3LDKA 5FMCA 3LFIA 3BYLA 2YFRA 3R4YA 1TL2A 5FK8A 2QQUA 4KCBA 3C7OA 2ADDA 5A8DA 4AK5A 3ZXLA 4N2RA 3NQHA 5B6SA 2ADEA 5JOYA 4KMIA 3D60A 3RWKX 5FMBA 1YRZA 3VT2A 3R67A 4U6DA 5ANNA 3BYKA 3BYJA 3D5YA 3WPYA 1GYDB 5A7VA 4O8NA 2QQWA 5C2MA 3P2NA 2VDTA 1GYEB 3D61A 5FIXA 5GLQA 2AC1A 3ZXJA 3WN0A 1PT2A 3WN1A 3WMZA 3VSRA 3WPVA 2B4WA 3C7GA 5JOWA 3VSFA 4FFGA 3VSZA 3KSTA 2EXHA 2QQVA 5JOXA 1W2TA 5AYEA 3WASA 5AYDA 2EXKA 3ZXKA 4O8OA 4FFIA 3WPZA 4ONZA 4N2ZA 5GLMA 4O8PA 3LIHA 2OXBA 2X8FA 2EXIA 2X8TA 4FFHA 2X8SA 3OM7A 3QZ4A 4U6BA 3VT1A 4KC7A 5FLWA 4AK6A 3AKFA 4NOVA 4FFFA 1UV4A 3AKIA 3D5ZA 3SC7X 4EQVA 5AY9A 4PVAA 1WL7A 1OYGA 1GYHA 1Y7BA 5AYCA 1YIFA 3C7EA 5GLLA 5B6TA 1VKDA 3UGGA 2EXJA 4D47A
chains in the Genus database with same CATH topology
3WPUA 3LV4A 3VT0A 1Y9GA 3LIGA 3KF3A 3U14A 4UDKE 4UDGA 3OM6A 3UGFA 3LF7A 3LDRA 1ST8A 4N1IA 2YFTA 3U75A 5GLOA 3CU9A 3QEFA 5GLKA 3OM2A 3LEMA 5FK7A 4KC8A 3OM4A 3AKGA 3QEDA 5FKBA 3VSSA 3WMYA 3K1UA 3C7HA 5JOZA 3KF5A 4UDKA 5GLNA 3UGHA 3QEEA 1Y4WA 3C2UA 4N4BA 5A7VB 4QQSA 3WAUA 1UYPA 3BYNA 5FMDA 5GLPA 2XQRA 3PIGA 1Y9MA 3OM5A 1W18A 3AKHA 4UDIA 5FKCA 4PVIA 5C0PA 2YFSA 4KCAA 3QC2A 3PIJA 2AEYA 2AEZA 4MLGA 4UDJA 3R4ZA 1YI7A 5GLRA 3WN2A 3TAWA 5A8CA 4AK7A 3WATA 3C7FA 4COTA 3LDKA 5FMCA 3LFIA 3BYLA 2YFRA 3R4YA 5FK8A 2QQUA 4KCBA 3C7OA 2ADDA 5A8DA 4AK5A 3ZXLA 4N2RA 3NQHA 5B6SA 2ADEA 5JOYA 4KMIA 3D60A 3RWKX 5FMBA 1YRZA 3VT2A 3R67A 4U6DA 5ANNA 3BYKA 3BYJA 3D5YA 3WPYA 1GYDB 5A7VA 4O8NA 2QQWA 3P2NA 2VDTA 1GYEB 3D61A 5FIXA 5GLQA 2AC1A 3ZXJA 3WN0A 1PT2A 3WN1A 3WMZA 3VSRA 3WPVA 2B4WA 3C7GA 5JOWA 3VSFA 4FFGA 3VSZA 3KSTA 2EXHA 2QQVA 5JOXA 1W2TA 5AYEA 3WASA 5AYDA 2EXKA 3ZXKA 4O8OA 4FFIA 3WPZA 4ONZA 4N2ZA 5GLMA 4O8PA 3LIHA 2OXBA 2X8FA 2EXIA 2X8TA 4FFHA 2X8SA 3OM7A 3QZ4A 4U6BA 3VT1A 4KC7A 5FLWA 4AK6A 3AKFA 4NOVA 4FFFA 1UV4A 3AKIA 3D5ZA 3SC7X 4EQVA 5AY9A 4PVAA 1WL7A 1OYGA 1GYHA 1Y7BA 5AYCA 1YIFA 3C7EA 5GLLA 5B6TA 1VKDA 3UGGA 2EXJA 4D47A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WPU A;  3LV4 A;  3VT0 A;  1Y9G A;  3LIG A;  3KF3 A;  3U14 A;  4UDK E;  4UDG A;  3OM6 A;  3UGF A;  3LF7 A;  3LDR A;  1ST8 A;  4N1I A;  2YFT A;  3U75 A;  5GLO A;  3CU9 A;  3QEF A;  5GLK A;  3OM2 A;  3LEM A;  5FK7 A;  4KC8 A;  3OM4 A;  3AKG A;  3QED A;  5FKB A;  3VSS A;  3WMY A;  3K1U A;  3C7H A;  5JOZ A;  3KF5 A;  4UDK A;  5GLN A;  3UGH A;  3QEE A;  1Y4W A;  3C2U A;  4N4B A;  5A7V B;  4QQS A;  3WAU A;  1UYP A;  3BYN A;  5FMD A;  5GLP A;  2XQR A;  3PIG A;  1Y9M A;  3OM5 A;  1W18 A;  3AKH A;  4UDI A;  5FKC A;  4PVI A;  5C0P A;  2YFS A;  4KCA A;  3QC2 A;  3PIJ A;  2AEY A;  2AEZ A;  4MLG A;  4UDJ A;  3R4Z A;  1YI7 A;  5GLR A;  3WN2 A;  3TAW A;  5A8C A;  4AK7 A;  3WAT A;  3C7F A;  4COT A;  3LDK A;  5FMC A;  3LFI A;  3BYL A;  2YFR A;  3R4Y A;  5FK8 A;  2QQU A;  4KCB A;  3C7O A;  2ADD A;  5A8D A;  4AK5 A;  3ZXL A;  4N2R A;  3NQH A;  5B6S A;  2ADE A;  5JOY A;  4KMI A;  3D60 A;  3RWK X;  5FMB A;  1YRZ A;  3VT2 A;  3R67 A;  4U6D A;  5ANN A;  3BYK A;  3BYJ A;  3D5Y A;  3WPY A;  1GYD B;  5A7V A;  4O8N A;  2QQW A;  3P2N A;  2VDT A;  1GYE B;  3D61 A;  5FIX A;  5GLQ A;  2AC1 A;  3ZXJ A;  3WN0 A;  1PT2 A;  3WN1 A;  3WMZ A;  3VSR A;  3WPV A;  2B4W A;  3C7G A;  5JOW A;  3VSF A;  4FFG A;  3VSZ A;  3KST A;  2EXH A;  2QQV A;  5JOX A;  1W2T A;  5AYE A;  3WAS A;  5AYD A;  2EXK A;  3ZXK A;  4O8O A;  4FFI A;  3WPZ A;  4ONZ A;  4N2Z A;  5GLM A;  4O8P A;  3LIH A;  2OXB A;  2X8F A;  2EXI A;  2X8T A;  4FFH A;  2X8S A;  3OM7 A;  3QZ4 A;  4U6B A;  3VT1 A;  4KC7 A;  5FLW A;  4AK6 A;  3AKF A;  4NOV A;  4FFF A;  1UV4 A;  3AKI A;  3D5Z A;  3SC7 X;  4EQV A;  5AY9 A;  4PVA A;  1WL7 A;  1OYG A;  1GYH A;  1Y7B A;  5AYC A;  1YIF A;  3C7E A;  5GLL A;  5B6T A;  1VKD A;  3UGG A;  2EXJ A;  4D47 A; 
#chains in the Genus database with same CATH topology
 3WPU A;  3LV4 A;  3VT0 A;  1Y9G A;  3LIG A;  3KF3 A;  3U14 A;  4UDK E;  4UDG A;  3OM6 A;  3UGF A;  3LF7 A;  3LDR A;  1ST8 A;  4N1I A;  2YFT A;  3U75 A;  5GLO A;  3CU9 A;  3QEF A;  5GLK A;  3OM2 A;  3LEM A;  5FK7 A;  4KC8 A;  3OM4 A;  3AKG A;  3QED A;  5FKB A;  3VSS A;  3WMY A;  3K1U A;  3C7H A;  5JOZ A;  3KF5 A;  4UDK A;  5GLN A;  3UGH A;  3QEE A;  1Y4W A;  3C2U A;  4N4B A;  5A7V B;  4QQS A;  3WAU A;  1UYP A;  3BYN A;  5FMD A;  5GLP A;  2XQR A;  3PIG A;  1Y9M A;  3OM5 A;  1W18 A;  3AKH A;  4UDI A;  5FKC A;  4PVI A;  5C0P A;  2YFS A;  4KCA A;  3QC2 A;  3PIJ A;  2AEY A;  2AEZ A;  4MLG A;  4UDJ A;  3R4Z A;  1YI7 A;  5GLR A;  3WN2 A;  3TAW A;  5A8C A;  4AK7 A;  3WAT A;  3C7F A;  4COT A;  3LDK A;  5FMC A;  3LFI A;  3BYL A;  2YFR A;  3R4Y A;  1TL2 A;  5FK8 A;  2QQU A;  4KCB A;  3C7O A;  2ADD A;  5A8D A;  4AK5 A;  3ZXL A;  4N2R A;  3NQH A;  5B6S A;  2ADE A;  5JOY A;  4KMI A;  3D60 A;  3RWK X;  5FMB A;  1YRZ A;  3VT2 A;  3R67 A;  4U6D A;  5ANN A;  3BYK A;  3BYJ A;  3D5Y A;  3WPY A;  1GYD B;  5A7V A;  4O8N A;  2QQW A;  5C2M A;  3P2N A;  2VDT A;  1GYE B;  3D61 A;  5FIX A;  5GLQ A;  2AC1 A;  3ZXJ A;  3WN0 A;  1PT2 A;  3WN1 A;  3WMZ A;  3VSR A;  3WPV A;  2B4W A;  3C7G A;  5JOW A;  3VSF A;  4FFG A;  3VSZ A;  3KST A;  2EXH A;  2QQV A;  5JOX A;  1W2T A;  5AYE A;  3WAS A;  5AYD A;  2EXK A;  3ZXK A;  4O8O A;  4FFI A;  3WPZ A;  4ONZ A;  4N2Z A;  5GLM A;  4O8P A;  3LIH A;  2OXB A;  2X8F A;  2EXI A;  2X8T A;  4FFH A;  2X8S A;  3OM7 A;  3QZ4 A;  4U6B A;  3VT1 A;  4KC7 A;  5FLW A;  4AK6 A;  3AKF A;  4NOV A;  4FFF A;  1UV4 A;  3AKI A;  3D5Z A;  3SC7 X;  4EQV A;  5AY9 A;  4PVA A;  1WL7 A;  1OYG A;  1GYH A;  1Y7B A;  5AYC A;  1YIF A;  3C7E A;  5GLL A;  5B6T A;  1VKD A;  3UGG A;  2EXJ A;  4D47 A; 
#chains in the Genus database with same CATH homology
 3WPU A;  3LV4 A;  3VT0 A;  1Y9G A;  3LIG A;  3KF3 A;  3U14 A;  4UDK E;  4UDG A;  3OM6 A;  3UGF A;  3LF7 A;  3LDR A;  1ST8 A;  4N1I A;  2YFT A;  3U75 A;  5GLO A;  3CU9 A;  3QEF A;  5GLK A;  3OM2 A;  3LEM A;  5FK7 A;  4KC8 A;  3OM4 A;  3AKG A;  3QED A;  5FKB A;  3VSS A;  3WMY A;  3K1U A;  3C7H A;  5JOZ A;  3KF5 A;  4UDK A;  5GLN A;  3UGH A;  3QEE A;  1Y4W A;  3C2U A;  4N4B A;  5A7V B;  4QQS A;  3WAU A;  1UYP A;  3BYN A;  5FMD A;  5GLP A;  2XQR A;  3PIG A;  1Y9M A;  3OM5 A;  1W18 A;  3AKH A;  4UDI A;  5FKC A;  4PVI A;  5C0P A;  2YFS A;  4KCA A;  3QC2 A;  3PIJ A;  2AEY A;  2AEZ A;  4MLG A;  4UDJ A;  3R4Z A;  1YI7 A;  5GLR A;  3WN2 A;  3TAW A;  5A8C A;  4AK7 A;  3WAT A;  3C7F A;  4COT A;  3LDK A;  5FMC A;  3LFI A;  3BYL A;  2YFR A;  3R4Y A;  5FK8 A;  2QQU A;  4KCB A;  3C7O A;  2ADD A;  5A8D A;  4AK5 A;  3ZXL A;  4N2R A;  3NQH A;  5B6S A;  2ADE A;  5JOY A;  4KMI A;  3D60 A;  3RWK X;  5FMB A;  1YRZ A;  3VT2 A;  3R67 A;  4U6D A;  5ANN A;  3BYK A;  3BYJ A;  3D5Y A;  3WPY A;  1GYD B;  5A7V A;  4O8N A;  2QQW A;  3P2N A;  2VDT A;  1GYE B;  3D61 A;  5FIX A;  5GLQ A;  2AC1 A;  3ZXJ A;  3WN0 A;  1PT2 A;  3WN1 A;  3WMZ A;  3VSR A;  3WPV A;  2B4W A;  3C7G A;  5JOW A;  3VSF A;  4FFG A;  3VSZ A;  3KST A;  2EXH A;  2QQV A;  5JOX A;  1W2T A;  5AYE A;  3WAS A;  5AYD A;  2EXK A;  3ZXK A;  4O8O A;  4FFI A;  3WPZ A;  4ONZ A;  4N2Z A;  5GLM A;  4O8P A;  3LIH A;  2OXB A;  2X8F A;  2EXI A;  2X8T A;  4FFH A;  2X8S A;  3OM7 A;  3QZ4 A;  4U6B A;  3VT1 A;  4KC7 A;  5FLW A;  4AK6 A;  3AKF A;  4NOV A;  4FFF A;  1UV4 A;  3AKI A;  3D5Z A;  3SC7 X;  4EQV A;  5AY9 A;  4PVA A;  1WL7 A;  1OYG A;  1GYH A;  1Y7B A;  5AYC A;  1YIF A;  3C7E A;  5GLL A;  5B6T A;  1VKD A;  3UGG A;  2EXJ A;  4D47 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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