5C0P | Genus

Total Genus 69

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	69
sequence length	284
structure length	284
Chain Sequence	ESFTIPVSSLRLRDPFILVDKKTSMYYLHFNNNLKIRVYKSKDLSTWKDEGYSFIAKSDFWGQQDFWAPDVYEYEGRYYLFTTFSNAGVKRGTSILVSDSPKGPFTPLVNKAITPSGWMCLDGSLYIDKEGNPWLLFCREWLETIDGEIYAQRLAKDLKTTEGDPYLLFKASEAPWVGSITSSGVTGNVTDAPFIYRLDDGKLIMLWSSFRKTDGKYAIGQAVSASGNVLGPWVQEPETLNSDDGGHAMVFKDLKGRLMISYHAPNSQTEHPVITPIYIKDGKF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Bacteroides thetaiotaomicron (strain atcc 29148 / dsm 2079 / nctc 10582 / e50 /
publication title	The crystal structure of endo-arabinase from Bacteroides thetaiotaomicron VPI-5482 rcsb
molecule keywords	Endo-arabinase
total genus	69
structure length	284
sequence length	284
ec nomenclature
pdb deposition date	2015-06-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04616	Glyco_hydro_43	Glycosyl hydrolases family 43

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2; Chain A	Glycosyl hydrolase domain; family 43	5c0pA00

5JOYA 2YFTA 3OM2A 1YI7A 2EXHA 2XQRA 5A7VA 3R67A 3LDKA 3LFIA 3C7GA 1W2TA 3LIGA 3P2NA 4ONZA 5JOZA 3QZ4A 4UDIA 5FLWA 3R4ZA 4U6BA 3ZXLA 5AYCA 4U6DA 1YRZA 3WPZA 3VSZA 2ADDA 3U14A 5FIXA 3BYLA 3OM4A 4FFHA 3D60A 2B4WA 5GLKA 4UDGA 5C0PA 1UV4A 2AEYA 3C7OA 3R4YA 3C7FA 2X8SA 4EQVA 5JOWA 4MLGA 3OM7A 3WAUA 3C2UA 3OM5A 3BYJA 3QEFA 3SC7X 1Y9MA 4COTA 5GLQA 3AKIA 5GLNA 3VT1A 5FK8A 1Y9GA 4AK7A 4AK6A 3WN0A 3VT2A 3WN2A 5JOXA 3VSRA 5B6SA 3LDRA 3LV4A 5FMBA 2EXJA 3KF3A 2VDTA 5A8CA 4NOVA 1W18A 3WATA 4O8OA 2QQVA 1Y7BA 3LF7A 5AYEA 3OM6A 4FFGA 3LEMA 3D5YA 3RWKX 2QQUA 5FMDA 3WASA 1PT2A 5FMCA 4D47A 4KC8A 1VKDA 4UDKE 3K1UA 5GLPA 3WMYA 3ZXJA 2ADEA 4FFIA 4FFFA 4UDKA 3VSFA 3AKFA 2EXIA 4O8PA 3WPYA 3UGHA 5GLRA 1OYGA 1UYPA 1GYEB 4N4BA 3WMZA 3BYNA 1Y4WA 2YFRA 3QEEA 5GLOA 1ST8A 3NQHA 5ANNA 5GLMA 3WN1A 3U75A 5AYDA 5AY9A 3D5ZA 5FKCA 3LIHA 2AC1A 3VT0A 2AEZA 2QQWA 1YIFA 3BYKA 3PIJA 5FK7A 4N1IA 4KCAA 2EXKA 3AKHA 3WPVA 4PVAA 5B6TA 2YFSA 5A8DA 3KSTA 4KCBA 3UGFA 4O8NA 4KMIA 5FKBA 3TAWA 1WL7A 4KC7A 4N2ZA 4QQSA 3UGGA 3AKGA 3CU9A 4PVIA 2X8FA 3QEDA 4AK5A 3C7EA 3VSSA 2X8TA 3D61A 3WPUA 3QC2A 4N2RA 1GYDB 3ZXKA 4UDJA 2OXBA 5GLLA 1GYHA 3C7HA 3PIGA 3KF5A 5A7VB
chains in the Genus database with same CATH superfamily

5JOYA 2YFTA 3OM2A 1YI7A 2EXHA 2XQRA 5A7VA 3R67A 3LDKA 3LFIA 3C7GA 1TL2A 1W2TA 3LIGA 3P2NA 4ONZA 5JOZA 3QZ4A 4UDIA 5FLWA 3R4ZA 4U6BA 3ZXLA 5AYCA 4U6DA 1YRZA 3WPZA 3VSZA 2ADDA 3U14A 5FIXA 3BYLA 3OM4A 4FFHA 3D60A 2B4WA 5GLKA 4UDGA 5C0PA 1UV4A 2AEYA 3C7OA 3R4YA 3C7FA 2X8SA 4EQVA 5JOWA 4MLGA 3OM7A 3WAUA 3C2UA 3OM5A 3BYJA 3QEFA 3SC7X 1Y9MA 4COTA 5GLQA 3AKIA 5GLNA 3VT1A 5FK8A 1Y9GA 4AK7A 4AK6A 3WN0A 3VT2A 3WN2A 5JOXA 3VSRA 5B6SA 3LDRA 3LV4A 5FMBA 2EXJA 3KF3A 5C2MA 2VDTA 5A8CA 4NOVA 1W18A 3WATA 4O8OA 2QQVA 1Y7BA 3LF7A 5AYEA 3OM6A 4FFGA 3LEMA 3D5YA 3RWKX 2QQUA 5FMDA 3WASA 1PT2A 5FMCA 4D47A 4KC8A 1VKDA 4UDKE 3K1UA 5GLPA 3WMYA 3ZXJA 2ADEA 4FFIA 4FFFA 4UDKA 3VSFA 3AKFA 2EXIA 4O8PA 3WPYA 3UGHA 5GLRA 1OYGA 1UYPA 1GYEB 4N4BA 3WMZA 3BYNA 1Y4WA 2YFRA 3QEEA 5GLOA 1ST8A 3NQHA 5ANNA 5GLMA 3WN1A 3U75A 5AYDA 5AY9A 3D5ZA 5FKCA 3LIHA 2AC1A 3VT0A 2AEZA 2QQWA 1YIFA 3BYKA 3PIJA 5FK7A 4N1IA 4KCAA 2EXKA 3AKHA 3WPVA 4PVAA 5B6TA 2YFSA 5A8DA 3KSTA 4KCBA 3UGFA 4O8NA 4KMIA 5FKBA 3TAWA 1WL7A 4KC7A 4N2ZA 4QQSA 3UGGA 3AKGA 3CU9A 4PVIA 2X8FA 3QEDA 4AK5A 3C7EA 3VSSA 2X8TA 3D61A 3WPUA 3QC2A 4N2RA 1GYDB 3ZXKA 4UDJA 2OXBA 5GLLA 1GYHA 3C7HA 3PIGA 3KF5A 5A7VB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5JOY A;  2YFT A;  3OM2 A;  1YI7 A;  2EXH A;  2XQR A;  5A7V A;  3R67 A;  3LDK A;  3LFI A;  3C7G A;  1W2T A;  3LIG A;  3P2N A;  4ONZ A;  5JOZ A;  3QZ4 A;  4UDI A;  5FLW A;  3R4Z A;  4U6B A;  3ZXL A;  5AYC A;  4U6D A;  1YRZ A;  3WPZ A;  3VSZ A;  2ADD A;  3U14 A;  5FIX A;  3BYL A;  3OM4 A;  4FFH A;  3D60 A;  2B4W A;  5GLK A;  4UDG A;  5C0P A;  1UV4 A;  2AEY A;  3C7O A;  3R4Y A;  3C7F A;  2X8S A;  4EQV A;  5JOW A;  4MLG A;  3OM7 A;  3WAU A;  3C2U A;  3OM5 A;  3BYJ A;  3QEF A;  3SC7 X;  1Y9M A;  4COT A;  5GLQ A;  3AKI A;  5GLN A;  3VT1 A;  5FK8 A;  1Y9G A;  4AK7 A;  4AK6 A;  3WN0 A;  3VT2 A;  3WN2 A;  5JOX A;  3VSR A;  5B6S A;  3LDR A;  3LV4 A;  5FMB A;  2EXJ A;  3KF3 A;  2VDT A;  5A8C A;  4NOV A;  1W18 A;  3WAT A;  4O8O A;  2QQV A;  1Y7B A;  3LF7 A;  5AYE A;  3OM6 A;  4FFG A;  3LEM A;  3D5Y A;  3RWK X;  2QQU A;  5FMD A;  3WAS A;  1PT2 A;  5FMC A;  4D47 A;  4KC8 A;  1VKD A;  4UDK E;  3K1U A;  5GLP A;  3WMY A;  3ZXJ A;  2ADE A;  4FFI A;  4FFF A;  4UDK A;  3VSF A;  3AKF A;  2EXI A;  4O8P A;  3WPY A;  3UGH A;  5GLR A;  1OYG A;  1UYP A;  1GYE B;  4N4B A;  3WMZ A;  3BYN A;  1Y4W A;  2YFR A;  3QEE A;  5GLO A;  1ST8 A;  3NQH A;  5ANN A;  5GLM A;  3WN1 A;  3U75 A;  5AYD A;  5AY9 A;  3D5Z A;  5FKC A;  3LIH A;  2AC1 A;  3VT0 A;  2AEZ A;  2QQW A;  1YIF A;  3BYK A;  3PIJ A;  5FK7 A;  4N1I A;  4KCA A;  2EXK A;  3AKH A;  3WPV A;  4PVA A;  5B6T A;  2YFS A;  5A8D A;  3KST A;  4KCB A;  3UGF A;  4O8N A;  4KMI A;  5FKB A;  3TAW A;  1WL7 A;  4KC7 A;  4N2Z A;  4QQS A;  3UGG A;  3AKG A;  3CU9 A;  4PVI A;  2X8F A;  3QED A;  4AK5 A;  3C7E A;  3VSS A;  2X8T A;  3D61 A;  3WPU A;  3QC2 A;  4N2R A;  1GYD B;  3ZXK A;  4UDJ A;  2OXB A;  5GLL A;  1GYH A;  3C7H A;  3PIG A;  3KF5 A;  5A7V B; 
#chains in the Genus database with same CATH topology
 5JOY A;  2YFT A;  3OM2 A;  1YI7 A;  2EXH A;  2XQR A;  5A7V A;  3R67 A;  3LDK A;  3LFI A;  3C7G A;  1TL2 A;  1W2T A;  3LIG A;  3P2N A;  4ONZ A;  5JOZ A;  3QZ4 A;  4UDI A;  5FLW A;  3R4Z A;  4U6B A;  3ZXL A;  5AYC A;  4U6D A;  1YRZ A;  3WPZ A;  3VSZ A;  2ADD A;  3U14 A;  5FIX A;  3BYL A;  3OM4 A;  4FFH A;  3D60 A;  2B4W A;  5GLK A;  4UDG A;  5C0P A;  1UV4 A;  2AEY A;  3C7O A;  3R4Y A;  3C7F A;  2X8S A;  4EQV A;  5JOW A;  4MLG A;  3OM7 A;  3WAU A;  3C2U A;  3OM5 A;  3BYJ A;  3QEF A;  3SC7 X;  1Y9M A;  4COT A;  5GLQ A;  3AKI A;  5GLN A;  3VT1 A;  5FK8 A;  1Y9G A;  4AK7 A;  4AK6 A;  3WN0 A;  3VT2 A;  3WN2 A;  5JOX A;  3VSR A;  5B6S A;  3LDR A;  3LV4 A;  5FMB A;  2EXJ A;  3KF3 A;  5C2M A;  2VDT A;  5A8C A;  4NOV A;  1W18 A;  3WAT A;  4O8O A;  2QQV A;  1Y7B A;  3LF7 A;  5AYE A;  3OM6 A;  4FFG A;  3LEM A;  3D5Y A;  3RWK X;  2QQU A;  5FMD A;  3WAS A;  1PT2 A;  5FMC A;  4D47 A;  4KC8 A;  1VKD A;  4UDK E;  3K1U A;  5GLP A;  3WMY A;  3ZXJ A;  2ADE A;  4FFI A;  4FFF A;  4UDK A;  3VSF A;  3AKF A;  2EXI A;  4O8P A;  3WPY A;  3UGH A;  5GLR A;  1OYG A;  1UYP A;  1GYE B;  4N4B A;  3WMZ A;  3BYN A;  1Y4W A;  2YFR A;  3QEE A;  5GLO A;  1ST8 A;  3NQH A;  5ANN A;  5GLM A;  3WN1 A;  3U75 A;  5AYD A;  5AY9 A;  3D5Z A;  5FKC A;  3LIH A;  2AC1 A;  3VT0 A;  2AEZ A;  2QQW A;  1YIF A;  3BYK A;  3PIJ A;  5FK7 A;  4N1I A;  4KCA A;  2EXK A;  3AKH A;  3WPV A;  4PVA A;  5B6T A;  2YFS A;  5A8D A;  3KST A;  4KCB A;  3UGF A;  4O8N A;  4KMI A;  5FKB A;  3TAW A;  1WL7 A;  4KC7 A;  4N2Z A;  4QQS A;  3UGG A;  3AKG A;  3CU9 A;  4PVI A;  2X8F A;  3QED A;  4AK5 A;  3C7E A;  3VSS A;  2X8T A;  3D61 A;  3WPU A;  3QC2 A;  4N2R A;  1GYD B;  3ZXK A;  4UDJ A;  2OXB A;  5GLL A;  1GYH A;  3C7H A;  3PIG A;  3KF5 A;  5A7V B; 
#chains in the Genus database with same CATH homology
 5JOY A;  2YFT A;  3OM2 A;  1YI7 A;  2EXH A;  2XQR A;  5A7V A;  3R67 A;  3LDK A;  3LFI A;  3C7G A;  1W2T A;  3LIG A;  3P2N A;  4ONZ A;  5JOZ A;  3QZ4 A;  4UDI A;  5FLW A;  3R4Z A;  4U6B A;  3ZXL A;  5AYC A;  4U6D A;  1YRZ A;  3WPZ A;  3VSZ A;  2ADD A;  3U14 A;  5FIX A;  3BYL A;  3OM4 A;  4FFH A;  3D60 A;  2B4W A;  5GLK A;  4UDG A;  5C0P A;  1UV4 A;  2AEY A;  3C7O A;  3R4Y A;  3C7F A;  2X8S A;  4EQV A;  5JOW A;  4MLG A;  3OM7 A;  3WAU A;  3C2U A;  3OM5 A;  3BYJ A;  3QEF A;  3SC7 X;  1Y9M A;  4COT A;  5GLQ A;  3AKI A;  5GLN A;  3VT1 A;  5FK8 A;  1Y9G A;  4AK7 A;  4AK6 A;  3WN0 A;  3VT2 A;  3WN2 A;  5JOX A;  3VSR A;  5B6S A;  3LDR A;  3LV4 A;  5FMB A;  2EXJ A;  3KF3 A;  2VDT A;  5A8C A;  4NOV A;  1W18 A;  3WAT A;  4O8O A;  2QQV A;  1Y7B A;  3LF7 A;  5AYE A;  3OM6 A;  4FFG A;  3LEM A;  3D5Y A;  3RWK X;  2QQU A;  5FMD A;  3WAS A;  1PT2 A;  5FMC A;  4D47 A;  4KC8 A;  1VKD A;  4UDK E;  3K1U A;  5GLP A;  3WMY A;  3ZXJ A;  2ADE A;  4FFI A;  4FFF A;  4UDK A;  3VSF A;  3AKF A;  2EXI A;  4O8P A;  3WPY A;  3UGH A;  5GLR A;  1OYG A;  1UYP A;  1GYE B;  4N4B A;  3WMZ A;  3BYN A;  1Y4W A;  2YFR A;  3QEE A;  5GLO A;  1ST8 A;  3NQH A;  5ANN A;  5GLM A;  3WN1 A;  3U75 A;  5AYD A;  5AY9 A;  3D5Z A;  5FKC A;  3LIH A;  2AC1 A;  3VT0 A;  2AEZ A;  2QQW A;  1YIF A;  3BYK A;  3PIJ A;  5FK7 A;  4N1I A;  4KCA A;  2EXK A;  3AKH A;  3WPV A;  4PVA A;  5B6T A;  2YFS A;  5A8D A;  3KST A;  4KCB A;  3UGF A;  4O8N A;  4KMI A;  5FKB A;  3TAW A;  1WL7 A;  4KC7 A;  4N2Z A;  4QQS A;  3UGG A;  3AKG A;  3CU9 A;  4PVI A;  2X8F A;  3QED A;  4AK5 A;  3C7E A;  3VSS A;  2X8T A;  3D61 A;  3WPU A;  3QC2 A;  4N2R A;  1GYD B;  3ZXK A;  4UDJ A;  2OXB A;  5GLL A;  1GYH A;  3C7H A;  3PIG A;  3KF5 A;  5A7V B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5C0PA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations