1KGZA

Crystal structure analysis of the anthranilate phosphoribosyltransferase from erwinia carotovora (current name, pectobacterium carotovorum)
Total Genus 94
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
333
structure length
328
Chain Sequence
THQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSAGSCDLLQAFGIRLDMSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTPTQVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAANVALLLKLFGQDNLRHNAQLALETIRSGTAFERVTALAAR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords Anthranilate phosphoribosyltransferase
publication title The Crystal Structure of Anthranilate Phosphoribosyltransferase from the Enterobacterium Pectobacterium carotovorum
pubmed doi rcsb
source organism Pectobacterium carotovorum
total genus 94
structure length 328
sequence length 333
chains with identical sequence B
ec nomenclature ec 2.4.2.18: Anthranilate phosphoribosyltransferase.
pdb deposition date 2001-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 1kgzA01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 1kgzA02
5EP8A 3QR9A 3TWPA 4OWMA 4OWUA 4GTNA 2BPQA 2GVQA 3H5QA 3GBRA 3QSAA 4MUOA 1KHDA 4YI7A 4EAFA 4X5EA 4GIUA 1ZVWA 4N5VA 4X5AA 4YYYA 4M0RA 2WK5A 1V8GA 2TPTA 2WK6A 1KGZA 4X59A 4LHMA 4X5DA 4EADA 1VQUA 4GA5A 5C2LA 4YEKA 2DSJA 1ZYKA 4ZTVA 5BNEA 3UU1A 4N8QA 4X5CA 3QQSA 4N93A 4OWNA 4GA4A 2J0FA 5C1RA 4GKMA 5BO2A 1GXBA 4X46A 4OWQA 5BO3A 1UOUA 4X5BA 4IJ1A 3QS8A 1AZYA 1OTPA 2ELCA 4HKMA 3R6CA 4X58A 4OWOA 4ZOKA 1O17A 4GA6A 4ZOFA 4ZOJA 1ZXYA 3R88A 4OWVA 4OWSA 1BRWA 5EY3A 4XR5A 5BYTA 5C7SA
chains in the Genus database with same CATH superfamily
5EP8A 3QR9A 3TWPA 4OWMA 4OWUA 4GTNA 2BPQA 2GVQA 3H5QA 3GBRA 3QSAA 1RF8B 4F3FC 4MUOA 1KHDA 4YI7A 4EAFA 4X5EA 4GIUA 1ZVWA 4N5VA 4X5AA 4YYYA 4M0RA 2WK5A 1V8GA 2TPTA 2WK6A 1KGZA 4X59A 4LHMA 4X5DA 4EADA 1VQUA 4GA5A 5C2LA 4YEKA 2DSJA 1ZYKA 4ZTVA 5BNEA 3UU1A 4N8QA 4X5CA 3QQSA 4N93A 4OWNA 4GA4A 2J0FA 5C1RA 4GKMA 5BO2A 1GXBA 4X46A 4OWQA 5BO3A 1UOUA 4X5BA 4IJ1A 3QS8A 1AZYA 1OTPA 2ELCA 4HKMA 3R6CA 4X58A 4OWOA 4ZOKA 1O17A 4GA6A 4ZOFA 4ZOJA 1ZXYA 3R88A 4OWVA 4OWSA 1RRZA 1BRWA 5EY3A 4XR5A 5BYTA 5C7SA
chains in the Genus database with same CATH topology
5EP8A 3QR9A 3TWPA 4OWMA 4OWUA 4GTNA 2BPQA 2GVQA 3H5QA 3GBRA 3QSAA 4MUOA 1KHDA 4YI7A 4EAFA 4X5EA 4GIUA 1ZVWA 4N5VA 4X5AA 4YYYA 4M0RA 2WK5A 1V8GA 2TPTA 2WK6A 1KGZA 4X59A 4LHMA 4X5DA 4EADA 1VQUA 4GA5A 5C2LA 4YEKA 2DSJA 1ZYKA 4ZTVA 5BNEA 3UU1A 4N8QA 4X5CA 3QQSA 4N93A 4OWNA 4GA4A 2J0FA 5C1RA 4GKMA 5BO2A 1GXBA 4X46A 4OWQA 5BO3A 1UOUA 4X5BA 4IJ1A 3QS8A 1AZYA 1OTPA 2ELCA 4HKMA 3R6CA 4X58A 4OWOA 4ZOKA 1O17A 4GA6A 4ZOFA 4ZOJA 1ZXYA 3R88A 4OWVA 4OWSA 1BRWA 5EY3A 4XR5A 5BYTA 5C7SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EP8 A;  3QR9 A;  3TWP A;  4OWM A;  4OWU A;  4GTN A;  2BPQ A;  2GVQ A;  3H5Q A;  3GBR A;  3QSA A;  4MUO A;  1KHD A;  4YI7 A;  4EAF A;  4X5E A;  4GIU A;  1ZVW A;  4N5V A;  4X5A A;  4YYY A;  4M0R A;  2WK5 A;  1V8G A;  2TPT A;  2WK6 A;  1KGZ A;  4X59 A;  4LHM A;  4X5D A;  4EAD A;  1VQU A;  4GA5 A;  5C2L A;  4YEK A;  2DSJ A;  1ZYK A;  4ZTV A;  5BNE A;  3UU1 A;  4N8Q A;  4X5C A;  3QQS A;  4N93 A;  4OWN A;  4GA4 A;  2J0F A;  5C1R A;  4GKM A;  5BO2 A;  1GXB A;  4X46 A;  4OWQ A;  5BO3 A;  1UOU A;  4X5B A;  4IJ1 A;  3QS8 A;  1AZY A;  1OTP A;  2ELC A;  4HKM A;  3R6C A;  4X58 A;  4OWO A;  4ZOK A;  1O17 A;  4GA6 A;  4ZOF A;  4ZOJ A;  1ZXY A;  3R88 A;  4OWV A;  4OWS A;  1BRW A;  5EY3 A;  4XR5 A;  5BYT A;  5C7S A; 
#chains in the Genus database with same CATH topology
 5EP8 A;  3QR9 A;  3TWP A;  4OWM A;  4OWU A;  4GTN A;  2BPQ A;  2GVQ A;  3H5Q A;  3GBR A;  3QSA A;  1RF8 B;  4F3F C;  4MUO A;  1KHD A;  4YI7 A;  4EAF A;  4X5E A;  4GIU A;  1ZVW A;  4N5V A;  4X5A A;  4YYY A;  4M0R A;  2WK5 A;  1V8G A;  2TPT A;  2WK6 A;  1KGZ A;  4X59 A;  4LHM A;  4X5D A;  4EAD A;  1VQU A;  4GA5 A;  5C2L A;  4YEK A;  2DSJ A;  1ZYK A;  4ZTV A;  5BNE A;  3UU1 A;  4N8Q A;  4X5C A;  3QQS A;  4N93 A;  4OWN A;  4GA4 A;  2J0F A;  5C1R A;  4GKM A;  5BO2 A;  1GXB A;  4X46 A;  4OWQ A;  5BO3 A;  1UOU A;  4X5B A;  4IJ1 A;  3QS8 A;  1AZY A;  1OTP A;  2ELC A;  4HKM A;  3R6C A;  4X58 A;  4OWO A;  4ZOK A;  1O17 A;  4GA6 A;  4ZOF A;  4ZOJ A;  1ZXY A;  3R88 A;  4OWV A;  4OWS A;  1RRZ A;  1BRW A;  5EY3 A;  4XR5 A;  5BYT A;  5C7S A; 
#chains in the Genus database with same CATH homology
 5EP8 A;  3QR9 A;  3TWP A;  4OWM A;  4OWU A;  4GTN A;  2BPQ A;  2GVQ A;  3H5Q A;  3GBR A;  3QSA A;  4MUO A;  1KHD A;  4YI7 A;  4EAF A;  4X5E A;  4GIU A;  1ZVW A;  4N5V A;  4X5A A;  4YYY A;  4M0R A;  2WK5 A;  1V8G A;  2TPT A;  2WK6 A;  1KGZ A;  4X59 A;  4LHM A;  4X5D A;  4EAD A;  1VQU A;  4GA5 A;  5C2L A;  4YEK A;  2DSJ A;  1ZYK A;  4ZTV A;  5BNE A;  3UU1 A;  4N8Q A;  4X5C A;  3QQS A;  4N93 A;  4OWN A;  4GA4 A;  2J0F A;  5C1R A;  4GKM A;  5BO2 A;  1GXB A;  4X46 A;  4OWQ A;  5BO3 A;  1UOU A;  4X5B A;  4IJ1 A;  3QS8 A;  1AZY A;  1OTP A;  2ELC A;  4HKM A;  3R6C A;  4X58 A;  4OWO A;  4ZOK A;  1O17 A;  4GA6 A;  4ZOF A;  4ZOJ A;  1ZXY A;  3R88 A;  4OWV A;  4OWS A;  1BRW A;  5EY3 A;  4XR5 A;  5BYT A;  5C7S A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...