1KGZA

Crystal structure analysis of the anthranilate phosphoribosyltransferase from erwinia carotovora (current name, pectobacterium carotovorum)
Total Genus 94

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
333
structure length
328
Chain Sequence
THQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSAGSCDLLQAFGIRLDMSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTPTQVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAANVALLLKLFGQDNLRHNAQLALETIRSGTAFERVTALAAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (45-58)TIV4 (166-169)AH4 (62-75)AH7 (147-157)S1 (87-91)S7 (253-259)O1 (100-102)TI1 (142-145)AH13 (318-331)AH12 (296-312)AH5 (102-112)AH6 (134-139)S2 (117-121)EMPTYTIV1 (123-131)TIV3 (131-134)TIV2 (124-132)S3 (159-163)3H2 (171-173)TI2 (168-171)AH8 (174-181)3H3 (209-211)AH9 (186-191)TI3 (191-194)TIV5 (192-195)TI4 (195-198)S4 (201-205)TIV6 (231-234)AH10 (212-222)TIV7 (249-252)TVIII1 (224-227)S5 (226-231)TI5 (239-242)AH11 (279-291)AH1 (14-21)3H4 (261-264)3H5 (271-273)AH2 (28-40)3H1 (164-166)S6 (244-250)Updating...
connected with : NaN
molecule tags Transferase
source organism Pectobacterium carotovorum
publication title The Crystal Structure of Anthranilate Phosphoribosyltransferase from the Enterobacterium Pectobacterium carotovorum
pubmed doi rcsb
molecule keywords Anthranilate phosphoribosyltransferase
total genus 94
structure length 328
sequence length 333
chains with identical sequence B
ec nomenclature ec 2.4.2.18: Anthranilate phosphoribosyltransferase.
pdb deposition date 2001-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 1kgzA01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 1kgzA02
3TWPA 5EY3A 4X46A 1KGZA 3R6CA 4X59A 4LHMA 5BYTA 5C1RA 1UOUA 4ZTVA 3QR9A 4EAFA 5C2LA 1ZVWA 3R88A 4X58A 4OWUA 4OWMA 4X5AA 4X5CA 3GBRA 3QSAA 4N93A 4OWNA 4GTNA 2WK6A 3QQSA 2J0FA 1AZYA 4GA4A 1VQUA 2DSJA 5EP8A 2ELCA 4YI7A 4IJ1A 5BO3A 1ZXYA 3H5QA 4ZOKA 4M0RA 4MUOA 2TPTA 4GA5A 4XR5A 4GKMA 4YEKA 4GIUA 4GA6A 1V8GA 4X5BA 1BRWA 4OWSA 5BO2A 2GVQA 1GXBA 4ZOFA 3UU1A 1KHDA 2BPQA 4N5VA 4HKMA 4N8QA 4YYYA 1OTPA 4OWVA 4X5DA 4EADA 1ZYKA 2WK5A 4OWOA 5C7SA 4ZOJA 4OWQA 1O17A 5BNEA 4X5EA 3QS8A
chains in the Genus database with same CATH superfamily
3TWPA 5EY3A 4X46A 1KGZA 3R6CA 4X59A 4LHMA 5BYTA 4F3FC 5C1RA 1UOUA 4ZTVA 3QR9A 4EAFA 5C2LA 1ZVWA 3R88A 4X58A 4OWUA 4OWMA 4X5AA 4X5CA 3GBRA 3QSAA 4N93A 4OWNA 4GTNA 2WK6A 3QQSA 2J0FA 1AZYA 4GA4A 1VQUA 2DSJA 5EP8A 2ELCA 4YI7A 4IJ1A 5BO3A 1ZXYA 3H5QA 4ZOKA 1RF8B 4M0RA 4MUOA 2TPTA 4GA5A 4XR5A 4GKMA 4YEKA 4GIUA 1RRZA 4GA6A 1V8GA 4X5BA 1BRWA 4OWSA 5BO2A 2GVQA 1GXBA 4ZOFA 3UU1A 1KHDA 2BPQA 4N5VA 4HKMA 4N8QA 4YYYA 1OTPA 4OWVA 4X5DA 4EADA 1ZYKA 2WK5A 4OWOA 5C7SA 4ZOJA 4OWQA 1O17A 5BNEA 4X5EA 3QS8A
chains in the Genus database with same CATH topology
3TWPA 5EY3A 4X46A 1KGZA 3R6CA 4X59A 4LHMA 5BYTA 5C1RA 1UOUA 4ZTVA 3QR9A 4EAFA 5C2LA 1ZVWA 3R88A 4X58A 4OWUA 4OWMA 4X5AA 4X5CA 3GBRA 3QSAA 4N93A 4OWNA 4GTNA 2WK6A 3QQSA 2J0FA 1AZYA 4GA4A 1VQUA 2DSJA 5EP8A 2ELCA 4YI7A 4IJ1A 5BO3A 1ZXYA 3H5QA 4ZOKA 4M0RA 4MUOA 2TPTA 4GA5A 4XR5A 4GKMA 4YEKA 4GIUA 4GA6A 1V8GA 4X5BA 1BRWA 4OWSA 5BO2A 2GVQA 1GXBA 4ZOFA 3UU1A 1KHDA 2BPQA 4N5VA 4HKMA 4N8QA 4YYYA 1OTPA 4OWVA 4X5DA 4EADA 1ZYKA 2WK5A 4OWOA 5C7SA 4ZOJA 4OWQA 1O17A 5BNEA 4X5EA 3QS8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TWP A;  5EY3 A;  4X46 A;  1KGZ A;  3R6C A;  4X59 A;  4LHM A;  5BYT A;  5C1R A;  1UOU A;  4ZTV A;  3QR9 A;  4EAF A;  5C2L A;  1ZVW A;  3R88 A;  4X58 A;  4OWU A;  4OWM A;  4X5A A;  4X5C A;  3GBR A;  3QSA A;  4N93 A;  4OWN A;  4GTN A;  2WK6 A;  3QQS A;  2J0F A;  1AZY A;  4GA4 A;  1VQU A;  2DSJ A;  5EP8 A;  2ELC A;  4YI7 A;  4IJ1 A;  5BO3 A;  1ZXY A;  3H5Q A;  4ZOK A;  4M0R A;  4MUO A;  2TPT A;  4GA5 A;  4XR5 A;  4GKM A;  4YEK A;  4GIU A;  4GA6 A;  1V8G A;  4X5B A;  1BRW A;  4OWS A;  5BO2 A;  2GVQ A;  1GXB A;  4ZOF A;  3UU1 A;  1KHD A;  2BPQ A;  4N5V A;  4HKM A;  4N8Q A;  4YYY A;  1OTP A;  4OWV A;  4X5D A;  4EAD A;  1ZYK A;  2WK5 A;  4OWO A;  5C7S A;  4ZOJ A;  4OWQ A;  1O17 A;  5BNE A;  4X5E A;  3QS8 A; 
#chains in the Genus database with same CATH topology
 3TWP A;  5EY3 A;  4X46 A;  1KGZ A;  3R6C A;  4X59 A;  4LHM A;  5BYT A;  4F3F C;  5C1R A;  1UOU A;  4ZTV A;  3QR9 A;  4EAF A;  5C2L A;  1ZVW A;  3R88 A;  4X58 A;  4OWU A;  4OWM A;  4X5A A;  4X5C A;  3GBR A;  3QSA A;  4N93 A;  4OWN A;  4GTN A;  2WK6 A;  3QQS A;  2J0F A;  1AZY A;  4GA4 A;  1VQU A;  2DSJ A;  5EP8 A;  2ELC A;  4YI7 A;  4IJ1 A;  5BO3 A;  1ZXY A;  3H5Q A;  4ZOK A;  1RF8 B;  4M0R A;  4MUO A;  2TPT A;  4GA5 A;  4XR5 A;  4GKM A;  4YEK A;  4GIU A;  1RRZ A;  4GA6 A;  1V8G A;  4X5B A;  1BRW A;  4OWS A;  5BO2 A;  2GVQ A;  1GXB A;  4ZOF A;  3UU1 A;  1KHD A;  2BPQ A;  4N5V A;  4HKM A;  4N8Q A;  4YYY A;  1OTP A;  4OWV A;  4X5D A;  4EAD A;  1ZYK A;  2WK5 A;  4OWO A;  5C7S A;  4ZOJ A;  4OWQ A;  1O17 A;  5BNE A;  4X5E A;  3QS8 A; 
#chains in the Genus database with same CATH homology
 3TWP A;  5EY3 A;  4X46 A;  1KGZ A;  3R6C A;  4X59 A;  4LHM A;  5BYT A;  5C1R A;  1UOU A;  4ZTV A;  3QR9 A;  4EAF A;  5C2L A;  1ZVW A;  3R88 A;  4X58 A;  4OWU A;  4OWM A;  4X5A A;  4X5C A;  3GBR A;  3QSA A;  4N93 A;  4OWN A;  4GTN A;  2WK6 A;  3QQS A;  2J0F A;  1AZY A;  4GA4 A;  1VQU A;  2DSJ A;  5EP8 A;  2ELC A;  4YI7 A;  4IJ1 A;  5BO3 A;  1ZXY A;  3H5Q A;  4ZOK A;  4M0R A;  4MUO A;  2TPT A;  4GA5 A;  4XR5 A;  4GKM A;  4YEK A;  4GIU A;  4GA6 A;  1V8G A;  4X5B A;  1BRW A;  4OWS A;  5BO2 A;  2GVQ A;  1GXB A;  4ZOF A;  3UU1 A;  1KHD A;  2BPQ A;  4N5V A;  4HKM A;  4N8Q A;  4YYY A;  1OTP A;  4OWV A;  4X5D A;  4EAD A;  1ZYK A;  2WK5 A;  4OWO A;  5C7S A;  4ZOJ A;  4OWQ A;  1O17 A;  5BNE A;  4X5E A;  3QS8 A; 
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