1BRWA

The crystal structure of pyrimidine nucleoside phosphorylase in a closed conformation
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
433
structure length
433
Chain Sequence
MRMVDLIAKKRDGKALTKEEIEWIVRGYTNGDIPDYQMSALAMAIYFRGMTEEETAALTMAMVQSGEMLDLSSIRGVKVDKHSTGGVGDTTTLVLGPLVASVGVPVAKMSGRGLGHTGGTIDKLESVPGFHVEISKDEFIRLVNENGIAIIGQTGDLTPADKKLYALRDVTATVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKKLDEARRLARVMVDIGKRVGRRTMAVISDMSQPLGYAVGNALEVKEAIETLKGNGPHDLTELCLTLGSHMVYLAEKAPSLDEARRLLEEAIRSGAAIAAFKTFLAAQGGDASVVDDLDKLPKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRPDVLDVKEKIEAAIRLSPQPVARPPLIYETIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords PROTEIN (PYRIMIDINE NUCLEOSIDE PHOSPHORYLASE)
publication title The crystal structure of pyrimidine nucleoside phosphorylase in a closed conformation.
pubmed doi rcsb
total genus 157
structure length 433
sequence length 433
chains with identical sequence B
ec nomenclature ec 2.4.2.2: Pyrimidine-nucleoside phosphorylase.
pdb deposition date 1998-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
A PF07831 PYNP_C Pyrimidine nucleoside phosphorylase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 1brwA03
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 1brwA02
3.90.1170.30 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Pyrimidine nucleoside phosphorylase-like, C-terminal domain 1brwA01
4OWSA 5EY3A 5C2LA 3QSAA 3TWPA 4X5EA 4M0RA 1KHDA 3H5QA 1KGZA 5BYTA 4GA6A 4YEKA 3R6CA 3UU1A 3QQSA 4X5CA 4OWOA 1ZYKA 5C1RA 4HKMA 2WK5A 1ZVWA 3GBRA 5EP8A 4N5VA 4OWUA 4X5AA 4EAFA 4OWQA 4X5BA 4ZTVA 4ZOKA 4X46A 4MUOA 3QR9A 5C7SA 4GA4A 4YYYA 2ELCA 5BNEA 1VQUA 4N8QA 1OTPA 4ZOFA 4OWVA 4GA5A 1AZYA 4X58A 4OWMA 4LHMA 4X59A 2J0FA 1O17A 1BRWA 5BO3A 4GIUA 4EADA 2BPQA 4XR5A 4ZOJA 2DSJA 4GKMA 2TPTA 3R88A 4GTNA 4X5DA 4OWNA 3QS8A 4IJ1A 2GVQA 5BO2A 1UOUA 1V8GA 2WK6A 4YI7A 4N93A 1GXBA 1ZXYA
chains in the Genus database with same CATH superfamily
1VQ4H 4KWVA 3GNNA 4OWSA 3C2EA 3NS1C 5GADN 5GAGN 1KD1J 1YTEA 2JBMA 2W55B 3CCEH 5EY3A 5C2LA 2B7NA 5DM6J 3QSAA 3OW2H 1YTDA 5AYZA 1S72H 1YIJH 4F3FC 4WFAJ 3TWPA 1FIQC 1N5WB 1QPOA 1WYGA 1YITH 4KWWA 4X5EA 1NVIE 4US9A 4M0RA 1KHDA 1N8RJ 4U67J 3C2VA 1YHQH 3CXCH 3H5QA 1KGZA 3I56H 1Q86J 1VQ5H 5BYTA 4GA6A 3ETRC 4IOAJ 4YEKA 3R6CA 1VQ7H 1JRPB 3UU1A 3I55H 1FFVB 2OMDA 3QQSA 3CMAH 3CC4H 4X5CA 4OWOA 1SIJA 1Q82J 1ZYKA 5C1RA 1Y69K 4HKMA 2WK5A 2OTLH 1N62B 3C2OA 1ZVWA 5HUPA 1VQ8H 1VDVA 1K73J 4C7YA 3NVYC 1WKIA 3GBRA 5EP8A 4N5VA 1QAPA 4OWUA 1FO4A 1ZXIB 3CCUH 3G71H 3CCJH 1K8AJ 1QVFH 1N63B 3FAHA 4X5AA 4EAFA 4OWQA 4X5BA 5HUOA 1M90J 3C2RA 3G6EH 4ZTVA 2ZJPJ 1JJ2H 4ZOKA 4X46A 4MUOA 1YTKA 1M1KJ 3CD6H 3QR9A 2WP4A 5C7SA 4GA4A 1YJNH 4YYYA 3CCRH 4IO9J 2Q5WE 3CF5J 1KQSH 5MPOC 3J7ZM 2ELCA 3CCVH 1Q7YJ 1KC8J 3C2FA 5BNEA 1VQUA 3AN1A 3VMMA 1Q81J 2ZJQJ 2W54B 3G4SH 4N8QA 1OTPA 1NVJA 2I1OA 4ZOFA 4OWVA 5AYXA 3CCLH 4GA5A 1O4UA 1N5XA 3L0GA 1QPRA 1AZYA 1DGJA 1N61B 3NVWC 1VQPH 3NVZC 4X58A 2B7PA 4OWMA 4I9AA 4LHMA 1K9MJ 3PIOJ 4X59A 2J0FA 1VQ9H 3CMEH 2W3RB 1VQLH 2OTJH 1O17A 1BRWA 3BIIE 1W2BH 5BO3A 2PA2A 4GIUA 3DLLJ 1JROB 1VQOH 1FFUB 3RPFA 3L4PA 1QPQA 2I14A 5AN9F 4UY8M 3NRZC 4EADA 2BPQA 4XR5A 3B9JC 4ZOJA 2DSJA 4GKMA 5AYYA 1QPNA 5HULA 2TPTA 2QEXH 1YJ9H 3R88A 1RF8B 4GTNA 1VQKH 1YJWH 5HL7J 4IOCJ 1SB3A 3FC4A 4WF9J 2B7QA 3PAJA 4C80A 1YI2H 1VLBA 4X5DA 3CC2H 1VQNH 5H1SO 2ZJRJ 4USAA 1VQMH 1FM0E 2E3TA 4OWNA 3QS8A 4IJ1A 5GAHN 2GVQA 3TQVA 5BO2A 4AP8A 1QVGH 1UOUA 1V8GA 1V97A 4ZOHA 5JVGJ 1N60B 3SR6C 3WNZA 5DM7J 4WFNJ 3CCSH 3CPWH 3PIPJ 3CCMH 4US8A 4WFBJ 1RRZA 2WK6A 3NVVC 3WO1A 3AM9A 5GAEN 2QIEA 5JVHJ 1NJIJ 4YI7A 3AMZA 3WO0A 3CCQH 4WCEJ 1RM6A 3CC7H 4C7ZA 4N93A 1X1OA 1GXBA 3EUB4 1ZXYA 5MLCO 2QA4H 1VQ6H 1FMAE 2W3SB
chains in the Genus database with same CATH topology
4OWSA 5EY3A 5C2LA 3QSAA 3TWPA 4X5EA 4M0RA 1KHDA 3H5QA 1KGZA 5BYTA 4GA6A 4YEKA 3R6CA 3UU1A 3QQSA 4X5CA 4OWOA 1ZYKA 5C1RA 4HKMA 2WK5A 1ZVWA 3GBRA 5EP8A 4N5VA 4OWUA 4X5AA 4EAFA 4OWQA 4X5BA 4ZTVA 4ZOKA 4X46A 4MUOA 3QR9A 5C7SA 4GA4A 4YYYA 2ELCA 5BNEA 1VQUA 4N8QA 1OTPA 4ZOFA 4OWVA 4GA5A 1AZYA 4X58A 4OWMA 4LHMA 4X59A 2J0FA 1O17A 1BRWA 5BO3A 4GIUA 4EADA 2BPQA 4XR5A 4ZOJA 2DSJA 4GKMA 2TPTA 3R88A 4GTNA 4X5DA 4OWNA 3QS8A 4IJ1A 2GVQA 5BO2A 1UOUA 1V8GA 2WK6A 4YI7A 4N93A 1GXBA 1ZXYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OWS A;  5EY3 A;  5C2L A;  3QSA A;  3TWP A;  4X5E A;  4M0R A;  1KHD A;  3H5Q A;  1KGZ A;  5BYT A;  4GA6 A;  4YEK A;  3R6C A;  3UU1 A;  3QQS A;  4X5C A;  4OWO A;  1ZYK A;  5C1R A;  4HKM A;  2WK5 A;  1ZVW A;  3GBR A;  5EP8 A;  4N5V A;  4OWU A;  4X5A A;  4EAF A;  4OWQ A;  4X5B A;  4ZTV A;  4ZOK A;  4X46 A;  4MUO A;  3QR9 A;  5C7S A;  4GA4 A;  4YYY A;  2ELC A;  5BNE A;  1VQU A;  4N8Q A;  1OTP A;  4ZOF A;  4OWV A;  4GA5 A;  1AZY A;  4X58 A;  4OWM A;  4LHM A;  4X59 A;  2J0F A;  1O17 A;  1BRW A;  5BO3 A;  4GIU A;  4EAD A;  2BPQ A;  4XR5 A;  4ZOJ A;  2DSJ A;  4GKM A;  2TPT A;  3R88 A;  4GTN A;  4X5D A;  4OWN A;  3QS8 A;  4IJ1 A;  2GVQ A;  5BO2 A;  1UOU A;  1V8G A;  2WK6 A;  4YI7 A;  4N93 A;  1GXB A;  1ZXY A; 
#chains in the Genus database with same CATH topology
 1VQ4 H;  4KWV A;  3GNN A;  4OWS A;  3C2E A;  3NS1 C;  5GAD N;  5GAG N;  1KD1 J;  1YTE A;  2JBM A;  2W55 B;  3CCE H;  5EY3 A;  5C2L A;  2B7N A;  5DM6 J;  3QSA A;  3OW2 H;  1YTD A;  5AYZ A;  1S72 H;  1YIJ H;  4F3F C;  4WFA J;  3TWP A;  1FIQ C;  1N5W B;  1QPO A;  1WYG A;  1YIT H;  4KWW A;  4X5E A;  1NVI E;  4US9 A;  4M0R A;  1KHD A;  1N8R J;  4U67 J;  3C2V A;  1YHQ H;  3CXC H;  3H5Q A;  1KGZ A;  3I56 H;  1Q86 J;  1VQ5 H;  5BYT A;  4GA6 A;  3ETR C;  4IOA J;  4YEK A;  3R6C A;  1VQ7 H;  1JRP B;  3UU1 A;  3I55 H;  1FFV B;  2OMD A;  3QQS A;  3CMA H;  3CC4 H;  4X5C A;  4OWO A;  1SIJ A;  1Q82 J;  1ZYK A;  5C1R A;  1Y69 K;  4HKM A;  2WK5 A;  2OTL H;  1N62 B;  3C2O A;  1ZVW A;  5HUP A;  1VQ8 H;  1VDV A;  1K73 J;  4C7Y A;  3NVY C;  1WKI A;  3GBR A;  5EP8 A;  4N5V A;  1QAP A;  4OWU A;  1FO4 A;  1ZXI B;  3CCU H;  3G71 H;  3CCJ H;  1K8A J;  1QVF H;  1N63 B;  3FAH A;  4X5A A;  4EAF A;  4OWQ A;  4X5B A;  5HUO A;  1M90 J;  3C2R A;  3G6E H;  4ZTV A;  2ZJP J;  1JJ2 H;  4ZOK A;  4X46 A;  4MUO A;  1YTK A;  1M1K J;  3CD6 H;  3QR9 A;  2WP4 A;  5C7S A;  4GA4 A;  1YJN H;  4YYY A;  3CCR H;  4IO9 J;  2Q5W E;  3CF5 J;  1KQS H;  5MPO C;  3J7Z M;  2ELC A;  3CCV H;  1Q7Y J;  1KC8 J;  3C2F A;  5BNE A;  1VQU A;  3AN1 A;  3VMM A;  1Q81 J;  2ZJQ J;  2W54 B;  3G4S H;  4N8Q A;  1OTP A;  1NVJ A;  2I1O A;  4ZOF A;  4OWV A;  5AYX A;  3CCL H;  4GA5 A;  1O4U A;  1N5X A;  3L0G A;  1QPR A;  1AZY A;  1DGJ A;  1N61 B;  3NVW C;  1VQP H;  3NVZ C;  4X58 A;  2B7P A;  4OWM A;  4I9A A;  4LHM A;  1K9M J;  3PIO J;  4X59 A;  2J0F A;  1VQ9 H;  3CME H;  2W3R B;  1VQL H;  2OTJ H;  1O17 A;  1BRW A;  3BII E;  1W2B H;  5BO3 A;  2PA2 A;  4GIU A;  3DLL J;  1JRO B;  1VQO H;  1FFU B;  3RPF A;  3L4P A;  1QPQ A;  2I14 A;  5AN9 F;  4UY8 M;  3NRZ C;  4EAD A;  2BPQ A;  4XR5 A;  3B9J C;  4ZOJ A;  2DSJ A;  4GKM A;  5AYY A;  1QPN A;  5HUL A;  2TPT A;  2QEX H;  1YJ9 H;  3R88 A;  1RF8 B;  4GTN A;  1VQK H;  1YJW H;  5HL7 J;  4IOC J;  1SB3 A;  3FC4 A;  4WF9 J;  2B7Q A;  3PAJ A;  4C80 A;  1YI2 H;  1VLB A;  4X5D A;  3CC2 H;  1VQN H;  5H1S O;  2ZJR J;  4USA A;  1VQM H;  1FM0 E;  2E3T A;  4OWN A;  3QS8 A;  4IJ1 A;  5GAH N;  2GVQ A;  3TQV A;  5BO2 A;  4AP8 A;  1QVG H;  1UOU A;  1V8G A;  1V97 A;  4ZOH A;  5JVG J;  1N60 B;  3SR6 C;  3WNZ A;  5DM7 J;  4WFN J;  3CCS H;  3CPW H;  3PIP J;  3CCM H;  4US8 A;  4WFB J;  1RRZ A;  2WK6 A;  3NVV C;  3WO1 A;  3AM9 A;  5GAE N;  2QIE A;  5JVH J;  1NJI J;  4YI7 A;  3AMZ A;  3WO0 A;  3CCQ H;  4WCE J;  1RM6 A;  3CC7 H;  4C7Z A;  4N93 A;  1X1O A;  1GXB A;  3EUB 4;  1ZXY A;  5MLC O;  2QA4 H;  1VQ6 H;  1FMA E;  2W3S B; 
#chains in the Genus database with same CATH homology
 4OWS A;  5EY3 A;  5C2L A;  3QSA A;  3TWP A;  4X5E A;  4M0R A;  1KHD A;  3H5Q A;  1KGZ A;  5BYT A;  4GA6 A;  4YEK A;  3R6C A;  3UU1 A;  3QQS A;  4X5C A;  4OWO A;  1ZYK A;  5C1R A;  4HKM A;  2WK5 A;  1ZVW A;  3GBR A;  5EP8 A;  4N5V A;  4OWU A;  4X5A A;  4EAF A;  4OWQ A;  4X5B A;  4ZTV A;  4ZOK A;  4X46 A;  4MUO A;  3QR9 A;  5C7S A;  4GA4 A;  4YYY A;  2ELC A;  5BNE A;  1VQU A;  4N8Q A;  1OTP A;  4ZOF A;  4OWV A;  4GA5 A;  1AZY A;  4X58 A;  4OWM A;  4LHM A;  4X59 A;  2J0F A;  1O17 A;  1BRW A;  5BO3 A;  4GIU A;  4EAD A;  2BPQ A;  4XR5 A;  4ZOJ A;  2DSJ A;  4GKM A;  2TPT A;  3R88 A;  4GTN A;  4X5D A;  4OWN A;  3QS8 A;  4IJ1 A;  2GVQ A;  5BO2 A;  1UOU A;  1V8G A;  2WK6 A;  4YI7 A;  4N93 A;  1GXB A;  1ZXY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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