4F3FC

Crystal structure of msln7-64 morab-009 fab complex
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
59
structure length
59
Chain Sequence
MCPSGKKAREIDESLIFYKKWELEACVDAALLATQMDRVNAIPFTYEQLDVLKHKLDEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords MORAb-009 Fab light chain
publication title Recognition of mesothelin by the therapeutic antibody MORAb-009: structural and mechanistic insights.
pubmed doi rcsb
source organism Mus musculus
total genus 18
structure length 59
sequence length 59
ec nomenclature
pdb deposition date 2012-05-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.40 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 4f3fC00
4F3FC
chains in the Genus database with same CATH superfamily
4X58A 5C2LA 4OWMA 3R6CA 4LHMA 4X5BA 1KHDA 2TPTA 1RF8B 5BYTA 3R88A 3TWPA 1RRZA 5BNEA 4MUOA 4N5VA 4XR5A 4YYYA 4HKMA 1OTPA 4EAFA 4OWQA 4X5CA 1ZXYA 4GA5A 1ZYKA 4OWNA 4M0RA 3QS8A 4GA4A 3UU1A 2WK6A 1KGZA 3GBRA 4IJ1A 4X5AA 2J0FA 4GA6A 3QQSA 4GKMA 4YI7A 4X5EA 2GVQA 1AZYA 1ZVWA 1BRWA 1VQUA 5BO3A 5EY3A 4F3FC 4ZOJA 4N93A 2DSJA 1GXBA 3H5QA 4X5DA 3QSAA 4X46A 4EADA 4ZTVA 3QR9A 5EP8A 2ELCA 5C7SA 4YEKA 4OWVA 4N8QA 1O17A 5BO2A 4OWOA 4OWSA 4ZOFA 4GIUA 5C1RA 2BPQA 4X59A 1V8GA 4OWUA 4ZOKA 2WK5A 1UOUA 4GTNA
chains in the Genus database with same CATH topology
4GA6A 1RF8B 4F3FC 4GA5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F3F C; 
#chains in the Genus database with same CATH topology
 4X58 A;  5C2L A;  4OWM A;  3R6C A;  4LHM A;  4X5B A;  1KHD A;  2TPT A;  1RF8 B;  5BYT A;  3R88 A;  3TWP A;  1RRZ A;  5BNE A;  4MUO A;  4N5V A;  4XR5 A;  4YYY A;  4HKM A;  1OTP A;  4EAF A;  4OWQ A;  4X5C A;  1ZXY A;  4GA5 A;  1ZYK A;  4OWN A;  4M0R A;  3QS8 A;  4GA4 A;  3UU1 A;  2WK6 A;  1KGZ A;  3GBR A;  4IJ1 A;  4X5A A;  2J0F A;  4GA6 A;  3QQS A;  4GKM A;  4YI7 A;  4X5E A;  2GVQ A;  1AZY A;  1ZVW A;  1BRW A;  1VQU A;  5BO3 A;  5EY3 A;  4F3F C;  4ZOJ A;  4N93 A;  2DSJ A;  1GXB A;  3H5Q A;  4X5D A;  3QSA A;  4X46 A;  4EAD A;  4ZTV A;  3QR9 A;  5EP8 A;  2ELC A;  5C7S A;  4YEK A;  4OWV A;  4N8Q A;  1O17 A;  5BO2 A;  4OWO A;  4OWS A;  4ZOF A;  4GIU A;  5C1R A;  2BPQ A;  4X59 A;  1V8G A;  4OWU A;  4ZOK A;  2WK5 A;  1UOU A;  4GTN A; 
#chains in the Genus database with same CATH homology
 4GA6 A;  1RF8 B;  4F3F C;  4GA5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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