4LHMA

Thymidine phosphorylase from e.coli with 3'-azido-3'-deoxythymidine
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
440
structure length
440
Chain Sequence
LFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYLPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENNWQEAAKAVKAAIKLADKAPESTPTVYRRISE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Thymidine phosphorylase
publication title 3'-Azidothymidine in the active site of Escherichia coli thymidine phosphorylase: the peculiarity of the binding on the basis of X-ray study.
pubmed doi rcsb
source organism Escherichia coli
total genus 161
structure length 440
sequence length 440
ec nomenclature ec 2.4.2.4: Thymidine phosphorylase.
pdb deposition date 2013-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
A PF07831 PYNP_C Pyrimidine nucleoside phosphorylase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 4lhmA01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 4lhmA02
3.90.1170.30 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Pyrimidine nucleoside phosphorylase-like, C-terminal domain 4lhmA03
4X59A 5BNEA 4ZOFA 3QQSA 4X5EA 2ELCA 3QR9A 4XR5A 4OWQA 1O17A 3H5QA 4OWMA 3GBRA 4HKMA 5C1RA 1KHDA 3QSAA 4N5VA 1BRWA 4GA4A 4OWOA 4N93A 4X5BA 5BYTA 2WK5A 4OWUA 2GVQA 4GTNA 2TPTA 4ZTVA 4OWVA 3R6CA 2J0FA 5BO2A 4IJ1A 1ZVWA 4YI7A 4X58A 4N8QA 2DSJA 3TWPA 4ZOKA 4EADA 1V8GA 4MUOA 4GKMA 4X5CA 2WK6A 5BO3A 2BPQA 3QS8A 5EP8A 3UU1A 4EAFA 3R88A 5EY3A 5C7SA 1OTPA 1VQUA 4YYYA 1UOUA 4OWNA 4X46A 4OWSA 4ZOJA 1ZYKA 1AZYA 1ZXYA 4X5AA 4LHMA 4M0RA 4X5DA 1KGZA 4GIUA 5C2LA 4GA5A 4GA6A 1GXBA 4YEKA
chains in the Genus database with same CATH superfamily
4X59A 3C2EA 3CC2H 5BNEA 1RF8B 4ZOFA 3QQSA 3CCJH 4X5EA 5GAGN 2ELCA 3QR9A 1N5WB 5GAEN 2W3SB 3CD6H 3CCRH 1YJWH 4XR5A 1FMAE 3AN1A 4ZOHA 1QPNA 4C7YA 1YTEA 4OWQA 2B7QA 1O4UA 1O17A 1Q86J 1RM6A 1KD1J 2I14A 4WCEJ 3PIOJ 3GNNA 3H5QA 5MLCO 4WFNJ 3OW2H 3CPWH 3WO0A 3C2VA 3NVYC 1Q7YJ 3PIPJ 3G4SH 1VQKH 1VQLH 4OWMA 3WNZA 3GBRA 5HL7J 1N62B 4HKMA 5C1RA 1KHDA 5HUPA 3CC7H 1QPRA 3C2FA 3J7ZM 3QSAA 3AM9A 4N5VA 1BRWA 4GA4A 1QPQA 1K9MJ 4OWOA 3FC4A 1QVFH 4N93A 4X5BA 5BYTA 2W3RB 2WK5A 3DLLJ 4OWUA 1YTKA 2GVQA 4GTNA 1N61B 2TPTA 1JRPB 3CCLH 1YHQH 4ZTVA 4AP8A 4OWVA 1VQPH 3FAHA 3R6CA 2J0FA 5BO2A 4IJ1A 1SB3A 1ZVWA 4YI7A 4X58A 4N8QA 2DSJA 4WFAJ 1VDVA 3TWPA 1NVIE 1QVGH 3NRZC 5AYXA 2ZJQJ 3NVWC 3NS1C 1S72H 4ZOKA 1VQMH 4EADA 1JROB 3CCUH 4IOCJ 4IOAJ 3I55H 4UY8M 1V8GA 5HUOA 3CCMH 4MUOA 3CCVH 1FM0E 3L4PA 5JVHJ 1VLBA 1VQ4H 1VQ8H 4GKMA 4X5CA 2WK6A 2JBMA 1KC8J 1FFVB 5BO3A 2BPQA 1N8RJ 1FFUB 1W2BH 3QS8A 1NVJA 5EP8A 3C2OA 1M90J 1WYGA 3UU1A 3RPFA 4KWVA 5JVGJ 1N60B 3CCQH 1NJIJ 5H1SO 3C2RA 1N63B 5HULA 2ZJPJ 4EAFA 1Q81J 1VQNH 2B7PA 3EUB4 4I9AA 1K73J 3R88A 5EY3A 5AN9F 2W55B 5C7SA 5GAHN 2PA2A 5MPOC 3CMEH 4C7ZA 1V97A 3SR6C 2OTJH 1SIJA 1OTPA 1VQUA 4YYYA 4U67J 5AYZA 3WO1A 1UOUA 5DM7J 5DM6J 3CXCH 2QA4H 3BIIE 4OWNA 3NVVC 3PAJA 4X46A 1VQOH 2OTLH 4OWSA 1Q82J 1K8AJ 4ZOJA 3G6EH 2QEXH 4US8A 3CF5J 1YI2H 1QAPA 1QPOA 2OMDA 1ZYKA 3VMMA 4US9A 1AZYA 2I1OA 1ZXYA 5GADN 3L0GA 1JJ2H 1YITH 4X5AA 3I56H 2QIEA 4F3FC 3AMZA 4WF9J 3ETRC 3G71H 3CCSH 1YJ9H 4USAA 1KQSH 1VQ7H 1VQ5H 4LHMA 4M0RA 1ZXIB 1YTDA 4X5DA 2Q5WE 1KGZA 3B9JC 1M1KJ 4GIUA 5C2LA 2B7NA 1YIJH 1YJNH 3CMAH 3CCEH 2W54B 3CC4H 4GA5A 2ZJRJ 4GA6A 3TQVA 4C80A 1FO4A 4WFBJ 1RRZA 1DGJA 4IO9J 1Y69K 1WKIA 1GXBA 5AYYA 1VQ9H 1FIQC 2WP4A 1X1OA 4KWWA 4YEKA 2E3TA 1VQ6H 1N5XA 3NVZC
chains in the Genus database with same CATH topology
4X59A 5BNEA 4ZOFA 3QQSA 4X5EA 2ELCA 3QR9A 4XR5A 4OWQA 1O17A 3H5QA 4OWMA 3GBRA 4HKMA 5C1RA 1KHDA 3QSAA 4N5VA 1BRWA 4GA4A 4OWOA 4N93A 4X5BA 5BYTA 2WK5A 4OWUA 2GVQA 4GTNA 2TPTA 4ZTVA 4OWVA 3R6CA 2J0FA 5BO2A 4IJ1A 1ZVWA 4YI7A 4X58A 4N8QA 2DSJA 3TWPA 4ZOKA 4EADA 1V8GA 4MUOA 4GKMA 4X5CA 2WK6A 5BO3A 2BPQA 3QS8A 5EP8A 3UU1A 4EAFA 3R88A 5EY3A 5C7SA 1OTPA 1VQUA 4YYYA 1UOUA 4OWNA 4X46A 4OWSA 4ZOJA 1ZYKA 1AZYA 1ZXYA 4X5AA 4LHMA 4M0RA 4X5DA 1KGZA 4GIUA 5C2LA 4GA5A 4GA6A 1GXBA 4YEKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4X59 A;  5BNE A;  4ZOF A;  3QQS A;  4X5E A;  2ELC A;  3QR9 A;  4XR5 A;  4OWQ A;  1O17 A;  3H5Q A;  4OWM A;  3GBR A;  4HKM A;  5C1R A;  1KHD A;  3QSA A;  4N5V A;  1BRW A;  4GA4 A;  4OWO A;  4N93 A;  4X5B A;  5BYT A;  2WK5 A;  4OWU A;  2GVQ A;  4GTN A;  2TPT A;  4ZTV A;  4OWV A;  3R6C A;  2J0F A;  5BO2 A;  4IJ1 A;  1ZVW A;  4YI7 A;  4X58 A;  4N8Q A;  2DSJ A;  3TWP A;  4ZOK A;  4EAD A;  1V8G A;  4MUO A;  4GKM A;  4X5C A;  2WK6 A;  5BO3 A;  2BPQ A;  3QS8 A;  5EP8 A;  3UU1 A;  4EAF A;  3R88 A;  5EY3 A;  5C7S A;  1OTP A;  1VQU A;  4YYY A;  1UOU A;  4OWN A;  4X46 A;  4OWS A;  4ZOJ A;  1ZYK A;  1AZY A;  1ZXY A;  4X5A A;  4LHM A;  4M0R A;  4X5D A;  1KGZ A;  4GIU A;  5C2L A;  4GA5 A;  4GA6 A;  1GXB A;  4YEK A; 
#chains in the Genus database with same CATH topology
 4X59 A;  3C2E A;  3CC2 H;  5BNE A;  1RF8 B;  4ZOF A;  3QQS A;  3CCJ H;  4X5E A;  5GAG N;  2ELC A;  3QR9 A;  1N5W B;  5GAE N;  2W3S B;  3CD6 H;  3CCR H;  1YJW H;  4XR5 A;  1FMA E;  3AN1 A;  4ZOH A;  1QPN A;  4C7Y A;  1YTE A;  4OWQ A;  2B7Q A;  1O4U A;  1O17 A;  1Q86 J;  1RM6 A;  1KD1 J;  2I14 A;  4WCE J;  3PIO J;  3GNN A;  3H5Q A;  5MLC O;  4WFN J;  3OW2 H;  3CPW H;  3WO0 A;  3C2V A;  3NVY C;  1Q7Y J;  3PIP J;  3G4S H;  1VQK H;  1VQL H;  4OWM A;  3WNZ A;  3GBR A;  5HL7 J;  1N62 B;  4HKM A;  5C1R A;  1KHD A;  5HUP A;  3CC7 H;  1QPR A;  3C2F A;  3J7Z M;  3QSA A;  3AM9 A;  4N5V A;  1BRW A;  4GA4 A;  1QPQ A;  1K9M J;  4OWO A;  3FC4 A;  1QVF H;  4N93 A;  4X5B A;  5BYT A;  2W3R B;  2WK5 A;  3DLL J;  4OWU A;  1YTK A;  2GVQ A;  4GTN A;  1N61 B;  2TPT A;  1JRP B;  3CCL H;  1YHQ H;  4ZTV A;  4AP8 A;  4OWV A;  1VQP H;  3FAH A;  3R6C A;  2J0F A;  5BO2 A;  4IJ1 A;  1SB3 A;  1ZVW A;  4YI7 A;  4X58 A;  4N8Q A;  2DSJ A;  4WFA J;  1VDV A;  3TWP A;  1NVI E;  1QVG H;  3NRZ C;  5AYX A;  2ZJQ J;  3NVW C;  3NS1 C;  1S72 H;  4ZOK A;  1VQM H;  4EAD A;  1JRO B;  3CCU H;  4IOC J;  4IOA J;  3I55 H;  4UY8 M;  1V8G A;  5HUO A;  3CCM H;  4MUO A;  3CCV H;  1FM0 E;  3L4P A;  5JVH J;  1VLB A;  1VQ4 H;  1VQ8 H;  4GKM A;  4X5C A;  2WK6 A;  2JBM A;  1KC8 J;  1FFV B;  5BO3 A;  2BPQ A;  1N8R J;  1FFU B;  1W2B H;  3QS8 A;  1NVJ A;  5EP8 A;  3C2O A;  1M90 J;  1WYG A;  3UU1 A;  3RPF A;  4KWV A;  5JVG J;  1N60 B;  3CCQ H;  1NJI J;  5H1S O;  3C2R A;  1N63 B;  5HUL A;  2ZJP J;  4EAF A;  1Q81 J;  1VQN H;  2B7P A;  3EUB 4;  4I9A A;  1K73 J;  3R88 A;  5EY3 A;  5AN9 F;  2W55 B;  5C7S A;  5GAH N;  2PA2 A;  5MPO C;  3CME H;  4C7Z A;  1V97 A;  3SR6 C;  2OTJ H;  1SIJ A;  1OTP A;  1VQU A;  4YYY A;  4U67 J;  5AYZ A;  3WO1 A;  1UOU A;  5DM7 J;  5DM6 J;  3CXC H;  2QA4 H;  3BII E;  4OWN A;  3NVV C;  3PAJ A;  4X46 A;  1VQO H;  2OTL H;  4OWS A;  1Q82 J;  1K8A J;  4ZOJ A;  3G6E H;  2QEX H;  4US8 A;  3CF5 J;  1YI2 H;  1QAP A;  1QPO A;  2OMD A;  1ZYK A;  3VMM A;  4US9 A;  1AZY A;  2I1O A;  1ZXY A;  5GAD N;  3L0G A;  1JJ2 H;  1YIT H;  4X5A A;  3I56 H;  2QIE A;  4F3F C;  3AMZ A;  4WF9 J;  3ETR C;  3G71 H;  3CCS H;  1YJ9 H;  4USA A;  1KQS H;  1VQ7 H;  1VQ5 H;  4LHM A;  4M0R A;  1ZXI B;  1YTD A;  4X5D A;  2Q5W E;  1KGZ A;  3B9J C;  1M1K J;  4GIU A;  5C2L A;  2B7N A;  1YIJ H;  1YJN H;  3CMA H;  3CCE H;  2W54 B;  3CC4 H;  4GA5 A;  2ZJR J;  4GA6 A;  3TQV A;  4C80 A;  1FO4 A;  4WFB J;  1RRZ A;  1DGJ A;  4IO9 J;  1Y69 K;  1WKI A;  1GXB A;  5AYY A;  1VQ9 H;  1FIQ C;  2WP4 A;  1X1O A;  4KWW A;  4YEK A;  2E3T A;  1VQ6 H;  1N5X A;  3NVZ C; 
#chains in the Genus database with same CATH homology
 4X59 A;  5BNE A;  4ZOF A;  3QQS A;  4X5E A;  2ELC A;  3QR9 A;  4XR5 A;  4OWQ A;  1O17 A;  3H5Q A;  4OWM A;  3GBR A;  4HKM A;  5C1R A;  1KHD A;  3QSA A;  4N5V A;  1BRW A;  4GA4 A;  4OWO A;  4N93 A;  4X5B A;  5BYT A;  2WK5 A;  4OWU A;  2GVQ A;  4GTN A;  2TPT A;  4ZTV A;  4OWV A;  3R6C A;  2J0F A;  5BO2 A;  4IJ1 A;  1ZVW A;  4YI7 A;  4X58 A;  4N8Q A;  2DSJ A;  3TWP A;  4ZOK A;  4EAD A;  1V8G A;  4MUO A;  4GKM A;  4X5C A;  2WK6 A;  5BO3 A;  2BPQ A;  3QS8 A;  5EP8 A;  3UU1 A;  4EAF A;  3R88 A;  5EY3 A;  5C7S A;  1OTP A;  1VQU A;  4YYY A;  1UOU A;  4OWN A;  4X46 A;  4OWS A;  4ZOJ A;  1ZYK A;  1AZY A;  1ZXY A;  4X5A A;  4LHM A;  4M0R A;  4X5D A;  1KGZ A;  4GIU A;  5C2L A;  4GA5 A;  4GA6 A;  1GXB A;  4YEK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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