1KHDA

Crystal structure analysis of the anthranilate phosphoribosyltransferase from erwinia carotovora at 1.9 resolution (current name, pectobacterium carotovorum)
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
333
structure length
324
Chain Sequence
THQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRCDLLQAFGIRLDMSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTPTQVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAANVALLLKLFGQDNLRHNAQLALETIRSGTAFERVTALAAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Crystal Structure of Anthranilate Phosphoribosyltransferase from the Enterobacterium Pectobacterium carotovorum
pubmed doi rcsb
molecule tags Transferase
source organism Pectobacterium carotovorum
molecule keywords Anthranilate phosphoribosyltransferase
total genus 111
structure length 324
sequence length 333
chains with identical sequence B, C, D
ec nomenclature ec 2.4.2.18: Anthranilate phosphoribosyltransferase.
pdb deposition date 2001-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 1khdA01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 1khdA02
4X46A 1ZXYA 4M0RA 1ZYKA 4OWSA 4GA4A 3H5QA 1BRWA 3R6CA 4N93A 4X5DA 3QSAA 5C2LA 4OWVA 5BYTA 4EAFA 4X5CA 1OTPA 4GKMA 1V8GA 4GIUA 3R88A 2WK5A 5BO2A 4OWQA 3QR9A 4YEKA 4MUOA 4ZOKA 4GTNA 1KHDA 4N8QA 4YI7A 1KGZA 4XR5A 4OWOA 2GVQA 5BO3A 4ZOJA 2DSJA 4LHMA 2WK6A 4EADA 1AZYA 4ZOFA 4YYYA 2ELCA 3TWPA 4N5VA 2BPQA 4OWUA 2J0FA 5BNEA 1O17A 4X5BA 5EY3A 4X58A 4IJ1A 1UOUA 4X5AA 4HKMA 4X5EA 4GA6A 4ZTVA 5C7SA 4OWMA 3GBRA 2TPTA 4OWNA 3UU1A 1VQUA 4X59A 1GXBA 1ZVWA 5C1RA 4GA5A 3QS8A 3QQSA 5EP8A
chains in the Genus database with same CATH superfamily
4X46A 1ZXYA 4M0RA 1ZYKA 4OWSA 4GA4A 3H5QA 1BRWA 3R6CA 4N93A 4X5DA 3QSAA 5C2LA 4OWVA 5BYTA 4EAFA 4X5CA 1OTPA 4GKMA 1V8GA 4GIUA 3R88A 2WK5A 5BO2A 4OWQA 3QR9A 4YEKA 4MUOA 4ZOKA 4GTNA 1KHDA 4N8QA 4YI7A 1KGZA 4XR5A 4OWOA 2GVQA 5BO3A 4ZOJA 2DSJA 4LHMA 2WK6A 4EADA 1AZYA 4ZOFA 1RRZA 4YYYA 2ELCA 3TWPA 4N5VA 2BPQA 4OWUA 4F3FC 2J0FA 5BNEA 1O17A 4X5BA 5EY3A 4X58A 4IJ1A 1UOUA 4X5AA 4HKMA 4GA6A 4X5EA 4ZTVA 5C7SA 4OWMA 3GBRA 2TPTA 4OWNA 3UU1A 1VQUA 4X59A 1GXBA 1ZVWA 4GA5A 5C1RA 1RF8B 3QS8A 3QQSA 5EP8A
chains in the Genus database with same CATH topology
4X46A 1ZXYA 4M0RA 1ZYKA 4OWSA 4GA4A 3H5QA 1BRWA 3R6CA 4N93A 4X5DA 3QSAA 5C2LA 4OWVA 5BYTA 4EAFA 4X5CA 1OTPA 4GKMA 1V8GA 4GIUA 3R88A 2WK5A 5BO2A 4OWQA 3QR9A 4YEKA 4MUOA 4ZOKA 4GTNA 1KHDA 4N8QA 4YI7A 1KGZA 4XR5A 4OWOA 2GVQA 5BO3A 4ZOJA 2DSJA 4LHMA 2WK6A 4EADA 1AZYA 4ZOFA 4YYYA 2ELCA 3TWPA 4N5VA 2BPQA 4OWUA 2J0FA 5BNEA 1O17A 4X5BA 5EY3A 4X58A 4IJ1A 1UOUA 4X5AA 4HKMA 4X5EA 4GA6A 4ZTVA 5C7SA 4OWMA 3GBRA 2TPTA 4OWNA 3UU1A 1VQUA 4X59A 1GXBA 1ZVWA 5C1RA 4GA5A 3QS8A 3QQSA 5EP8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4X46 A;  1ZXY A;  4M0R A;  1ZYK A;  4OWS A;  4GA4 A;  3H5Q A;  1BRW A;  3R6C A;  4N93 A;  4X5D A;  3QSA A;  5C2L A;  4OWV A;  5BYT A;  4EAF A;  4X5C A;  1OTP A;  4GKM A;  1V8G A;  4GIU A;  3R88 A;  2WK5 A;  5BO2 A;  4OWQ A;  3QR9 A;  4YEK A;  4MUO A;  4ZOK A;  4GTN A;  1KHD A;  4N8Q A;  4YI7 A;  1KGZ A;  4XR5 A;  4OWO A;  2GVQ A;  5BO3 A;  4ZOJ A;  2DSJ A;  4LHM A;  2WK6 A;  4EAD A;  1AZY A;  4ZOF A;  4YYY A;  2ELC A;  3TWP A;  4N5V A;  2BPQ A;  4OWU A;  2J0F A;  5BNE A;  1O17 A;  4X5B A;  5EY3 A;  4X58 A;  4IJ1 A;  1UOU A;  4X5A A;  4HKM A;  4X5E A;  4GA6 A;  4ZTV A;  5C7S A;  4OWM A;  3GBR A;  2TPT A;  4OWN A;  3UU1 A;  1VQU A;  4X59 A;  1GXB A;  1ZVW A;  5C1R A;  4GA5 A;  3QS8 A;  3QQS A;  5EP8 A; 
#chains in the Genus database with same CATH topology
 4X46 A;  1ZXY A;  4M0R A;  1ZYK A;  4OWS A;  4GA4 A;  3H5Q A;  1BRW A;  3R6C A;  4N93 A;  4X5D A;  3QSA A;  5C2L A;  4OWV A;  5BYT A;  4EAF A;  4X5C A;  1OTP A;  4GKM A;  1V8G A;  4GIU A;  3R88 A;  2WK5 A;  5BO2 A;  4OWQ A;  3QR9 A;  4YEK A;  4MUO A;  4ZOK A;  4GTN A;  1KHD A;  4N8Q A;  4YI7 A;  1KGZ A;  4XR5 A;  4OWO A;  2GVQ A;  5BO3 A;  4ZOJ A;  2DSJ A;  4LHM A;  2WK6 A;  4EAD A;  1AZY A;  4ZOF A;  1RRZ A;  4YYY A;  2ELC A;  3TWP A;  4N5V A;  2BPQ A;  4OWU A;  4F3F C;  2J0F A;  5BNE A;  1O17 A;  4X5B A;  5EY3 A;  4X58 A;  4IJ1 A;  1UOU A;  4X5A A;  4HKM A;  4GA6 A;  4X5E A;  4ZTV A;  5C7S A;  4OWM A;  3GBR A;  2TPT A;  4OWN A;  3UU1 A;  1VQU A;  4X59 A;  1GXB A;  1ZVW A;  4GA5 A;  5C1R A;  1RF8 B;  3QS8 A;  3QQS A;  5EP8 A; 
#chains in the Genus database with same CATH homology
 4X46 A;  1ZXY A;  4M0R A;  1ZYK A;  4OWS A;  4GA4 A;  3H5Q A;  1BRW A;  3R6C A;  4N93 A;  4X5D A;  3QSA A;  5C2L A;  4OWV A;  5BYT A;  4EAF A;  4X5C A;  1OTP A;  4GKM A;  1V8G A;  4GIU A;  3R88 A;  2WK5 A;  5BO2 A;  4OWQ A;  3QR9 A;  4YEK A;  4MUO A;  4ZOK A;  4GTN A;  1KHD A;  4N8Q A;  4YI7 A;  1KGZ A;  4XR5 A;  4OWO A;  2GVQ A;  5BO3 A;  4ZOJ A;  2DSJ A;  4LHM A;  2WK6 A;  4EAD A;  1AZY A;  4ZOF A;  4YYY A;  2ELC A;  3TWP A;  4N5V A;  2BPQ A;  4OWU A;  2J0F A;  5BNE A;  1O17 A;  4X5B A;  5EY3 A;  4X58 A;  4IJ1 A;  1UOU A;  4X5A A;  4HKM A;  4X5E A;  4GA6 A;  4ZTV A;  5C7S A;  4OWM A;  3GBR A;  2TPT A;  4OWN A;  3UU1 A;  1VQU A;  4X59 A;  1GXB A;  1ZVW A;  5C1R A;  4GA5 A;  3QS8 A;  3QQS A;  5EP8 A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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