1KHDA

Crystal structure analysis of the anthranilate phosphoribosyltransferase from erwinia carotovora at 1.9 resolution (current name, pectobacterium carotovorum)
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
333
structure length
324
Chain Sequence
THQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRCDLLQAFGIRLDMSAEDSRQALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTPTQVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAANVALLLKLFGQDNLRHNAQLALETIRSGTAFERVTALAAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Crystal Structure of Anthranilate Phosphoribosyltransferase from the Enterobacterium Pectobacterium carotovorum
pubmed doi rcsb
molecule tags Transferase
source organism Pectobacterium carotovorum
molecule keywords Anthranilate phosphoribosyltransferase
total genus 111
structure length 324
sequence length 333
chains with identical sequence B, C, D
ec nomenclature ec 2.4.2.18: Anthranilate phosphoribosyltransferase.
pdb deposition date 2001-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 1khdA01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 1khdA02
4OWSA 1ZYKA 4GKMA 4IJ1A 4GA5A 5EP8A 3QS8A 3QQSA 5EY3A 1ZVWA 1VQUA 4GIUA 1AZYA 4N93A 5BO3A 4N5VA 4ZTVA 4OWQA 4OWVA 5C1RA 4X5AA 2WK6A 4ZOJA 4X5EA 4X5CA 2WK5A 4GA6A 2GVQA 4X5DA 3R88A 4EADA 4X58A 4ZOKA 2BPQA 5C2LA 4X46A 1KHDA 1GXBA 4MUOA 4OWMA 3QR9A 5BNEA 2TPTA 4YI7A 4OWOA 2ELCA 1KGZA 2J0FA 3GBRA 4HKMA 4M0RA 5BYTA 3TWPA 3R6CA 1ZXYA 3UU1A 4X5BA 1OTPA 4EAFA 4ZOFA 1BRWA 4OWNA 4YEKA 4GTNA 3H5QA 5BO2A 2DSJA 3QSAA 1V8GA 4XR5A 4GA4A 4YYYA 1O17A 1UOUA 4X59A 5C7SA 4OWUA 4LHMA 4N8QA
chains in the Genus database with same CATH superfamily
4OWSA 1ZYKA 4GKMA 4IJ1A 4GA5A 5EP8A 3QS8A 3QQSA 5EY3A 1ZVWA 1VQUA 4GIUA 1AZYA 4N93A 5BO3A 4N5VA 4ZTVA 4OWQA 4OWVA 5C1RA 4X5AA 2WK6A 4ZOJA 4X5EA 4X5CA 1RF8B 4F3FC 2WK5A 4GA6A 2GVQA 4X5DA 1RRZA 3R88A 4EADA 4X58A 4ZOKA 2BPQA 5C2LA 4X46A 1KHDA 1GXBA 4MUOA 4OWMA 3QR9A 5BNEA 2TPTA 4YI7A 4OWOA 2ELCA 1KGZA 2J0FA 3GBRA 4HKMA 4M0RA 5BYTA 3TWPA 3R6CA 1ZXYA 3UU1A 4X5BA 1OTPA 4EAFA 4ZOFA 1BRWA 4OWNA 4YEKA 4GTNA 3H5QA 5BO2A 2DSJA 3QSAA 1V8GA 4XR5A 4GA4A 4YYYA 1O17A 1UOUA 4X59A 5C7SA 4OWUA 4LHMA 4N8QA
chains in the Genus database with same CATH topology
4OWSA 1ZYKA 4GKMA 4IJ1A 4GA5A 5EP8A 3QS8A 3QQSA 5EY3A 1ZVWA 1VQUA 4GIUA 1AZYA 4N93A 5BO3A 4N5VA 4ZTVA 4OWQA 4OWVA 5C1RA 4X5AA 2WK6A 4ZOJA 4X5EA 4X5CA 2WK5A 4GA6A 2GVQA 4X5DA 3R88A 4EADA 4X58A 4ZOKA 2BPQA 5C2LA 4X46A 1KHDA 1GXBA 4MUOA 4OWMA 3QR9A 5BNEA 2TPTA 4YI7A 4OWOA 2ELCA 1KGZA 2J0FA 3GBRA 4HKMA 4M0RA 5BYTA 3TWPA 3R6CA 1ZXYA 3UU1A 4X5BA 1OTPA 4EAFA 4ZOFA 1BRWA 4OWNA 4YEKA 4GTNA 3H5QA 5BO2A 2DSJA 3QSAA 1V8GA 4XR5A 4GA4A 4YYYA 1O17A 1UOUA 4X59A 5C7SA 4OWUA 4LHMA 4N8QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OWS A;  1ZYK A;  4GKM A;  4IJ1 A;  4GA5 A;  5EP8 A;  3QS8 A;  3QQS A;  5EY3 A;  1ZVW A;  1VQU A;  4GIU A;  1AZY A;  4N93 A;  5BO3 A;  4N5V A;  4ZTV A;  4OWQ A;  4OWV A;  5C1R A;  4X5A A;  2WK6 A;  4ZOJ A;  4X5E A;  4X5C A;  2WK5 A;  4GA6 A;  2GVQ A;  4X5D A;  3R88 A;  4EAD A;  4X58 A;  4ZOK A;  2BPQ A;  5C2L A;  4X46 A;  1KHD A;  1GXB A;  4MUO A;  4OWM A;  3QR9 A;  5BNE A;  2TPT A;  4YI7 A;  4OWO A;  2ELC A;  1KGZ A;  2J0F A;  3GBR A;  4HKM A;  4M0R A;  5BYT A;  3TWP A;  3R6C A;  1ZXY A;  3UU1 A;  4X5B A;  1OTP A;  4EAF A;  4ZOF A;  1BRW A;  4OWN A;  4YEK A;  4GTN A;  3H5Q A;  5BO2 A;  2DSJ A;  3QSA A;  1V8G A;  4XR5 A;  4GA4 A;  4YYY A;  1O17 A;  1UOU A;  4X59 A;  5C7S A;  4OWU A;  4LHM A;  4N8Q A; 
#chains in the Genus database with same CATH topology
 4OWS A;  1ZYK A;  4GKM A;  4IJ1 A;  4GA5 A;  5EP8 A;  3QS8 A;  3QQS A;  5EY3 A;  1ZVW A;  1VQU A;  4GIU A;  1AZY A;  4N93 A;  5BO3 A;  4N5V A;  4ZTV A;  4OWQ A;  4OWV A;  5C1R A;  4X5A A;  2WK6 A;  4ZOJ A;  4X5E A;  4X5C A;  1RF8 B;  4F3F C;  2WK5 A;  4GA6 A;  2GVQ A;  4X5D A;  1RRZ A;  3R88 A;  4EAD A;  4X58 A;  4ZOK A;  2BPQ A;  5C2L A;  4X46 A;  1KHD A;  1GXB A;  4MUO A;  4OWM A;  3QR9 A;  5BNE A;  2TPT A;  4YI7 A;  4OWO A;  2ELC A;  1KGZ A;  2J0F A;  3GBR A;  4HKM A;  4M0R A;  5BYT A;  3TWP A;  3R6C A;  1ZXY A;  3UU1 A;  4X5B A;  1OTP A;  4EAF A;  4ZOF A;  1BRW A;  4OWN A;  4YEK A;  4GTN A;  3H5Q A;  5BO2 A;  2DSJ A;  3QSA A;  1V8G A;  4XR5 A;  4GA4 A;  4YYY A;  1O17 A;  1UOU A;  4X59 A;  5C7S A;  4OWU A;  4LHM A;  4N8Q A; 
#chains in the Genus database with same CATH homology
 4OWS A;  1ZYK A;  4GKM A;  4IJ1 A;  4GA5 A;  5EP8 A;  3QS8 A;  3QQS A;  5EY3 A;  1ZVW A;  1VQU A;  4GIU A;  1AZY A;  4N93 A;  5BO3 A;  4N5V A;  4ZTV A;  4OWQ A;  4OWV A;  5C1R A;  4X5A A;  2WK6 A;  4ZOJ A;  4X5E A;  4X5C A;  2WK5 A;  4GA6 A;  2GVQ A;  4X5D A;  3R88 A;  4EAD A;  4X58 A;  4ZOK A;  2BPQ A;  5C2L A;  4X46 A;  1KHD A;  1GXB A;  4MUO A;  4OWM A;  3QR9 A;  5BNE A;  2TPT A;  4YI7 A;  4OWO A;  2ELC A;  1KGZ A;  2J0F A;  3GBR A;  4HKM A;  4M0R A;  5BYT A;  3TWP A;  3R6C A;  1ZXY A;  3UU1 A;  4X5B A;  1OTP A;  4EAF A;  4ZOF A;  1BRW A;  4OWN A;  4YEK A;  4GTN A;  3H5Q A;  5BO2 A;  2DSJ A;  3QSA A;  1V8G A;  4XR5 A;  4GA4 A;  4YYY A;  1O17 A;  1UOU A;  4X59 A;  5C7S A;  4OWU A;  4LHM A;  4N8Q A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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