The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
23
|
sequence length |
159
|
structure length |
159
|
Chain Sequence |
SPLLETCVPDRGREYRGRLAVTTHGSRCLAWSSEQAKALSKDQDFNPAVPLAENFCRNPDGDEEGAWCYVADQPGDFEYCDLNYCEEPVDGDLGDRLGEDPDPDAAIEGRTSEDHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
New insights into the regulation of the blood clotting cascade derived from the X-ray crystal structure of bovine meizothrombin des F1 in complex with PPACK.
pubmed doi rcsb |
| molecule tags |
Hydrolase/hydrolase inhibitor
|
| molecule keywords |
MEIZOTHROMBIN
|
| total genus |
23
|
| structure length |
159
|
| sequence length |
159
|
| chains with identical sequence |
D
|
| ec nomenclature |
ec
3.4.21.5: Thrombin. |
| pdb deposition date | 1997-11-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00051 | Kringle | Kringle domain |
| A | PF09396 | Thrombin_light | Thrombin light chain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Plasminogen Kringle 4 | Plasminogen Kringle 4 | ||
| Few Secondary Structures | Irregular | Epsilon-Thrombin; Chain L | Thrombin light chain domain |
#chains in the Genus database with same CATH superfamily 5CT3 A; 2B5T A; 4HZH A; 1A0H A; 3BEI A; 2A1D A; 2PK4 A; 3HN4 A; 3SP8 A; 4RKO A; 1URK A; 4D3C A; 3GIS A; 4BVV A; 2PF2 A; 1PMK A; 3KIV A; 3U73 A; 2PUX A; 3BEF A; 1JOU A; 1I71 A; 5HPG A; 4O03 A; 5COE A; 2K51 A; 3NXP A; 1TB6 L; 4IUA A; 1HPJ A; 1TBR J; 1PK2 A; 1JFN A; 2K4R A; 2PF1 A; 3HK6 A; 1HPK A; 2I9A A; 4BVC A; 4BV7 A; 2PGQ A; 1TQ7 A; 4BVW A; 4KIV A; 2HPQ P; 3LAQ A; 1GMN A; 1PK4 A; 2FEB A; 3MKP A; 1I5K A; 3B9F L; 4NZQ A; 1PKR A; 5CT1 A; 2HPP P; 2FD6 A; 1B2I A; 3LU9 A; 5CS5 A; 1GP9 A; 1NL2 A; 2KJ4 A; 1TPK A; 1AVG L; 1TBQ J; 2ODY A; 3EDX A; 4DUR A; 1NL1 A; 5CP9 A; 5CSQ A; 1KDU A; 5CS1 A; 2QJ4 A; 1GMO A; 1KIV A; 3HKI A; 1KRN A; 1KI0 A; 2QJ2 A; 2I9B A; 3BT1 A; 2DOH X; 2DOI A; 2SPT A; 1Z8J A; 4BVD A; 2KNF A; 4DY7 A; 1NK1 A; 5CT2 A; 2L0S A; 5CS3 A; 5CS9 A; 1CEA A; 4A5T S; 3BT2 A; 1BHT A; 1JMO L; 2PV9 A; 1CEB A; 4BV5 A; 1PML A; 3E6P L; 4CIK A; 3K65 A; #chains in the Genus database with same CATH topology 5CT3 A; 2B5T A; 4HZH A; 1A0H A; 3BEI A; 2A1D A; 2PK4 A; 3HN4 A; 3SP8 A; 4RKO A; 1URK A; 4D3C A; 3GIS A; 4BVV A; 2PF2 A; 1PMK A; 3KIV A; 3U73 A; 2PUX A; 3BEF A; 1JOU A; 1I71 A; 5HPG A; 4O03 A; 5COE A; 2K51 A; 3NXP A; 1TB6 L; 4IUA A; 1HPJ A; 1TBR J; 1PK2 A; 1JFN A; 2K4R A; 2PF1 A; 3HK6 A; 1HPK A; 2I9A A; 4BVC A; 4BV7 A; 2PGQ A; 1TQ7 A; 4BVW A; 4KIV A; 2HPQ P; 3LAQ A; 1GMN A; 1PK4 A; 2FEB A; 3MKP A; 1I5K A; 3B9F L; 4NZQ A; 1PKR A; 5CT1 A; 2HPP P; 2FD6 A; 1B2I A; 3LU9 A; 5CS5 A; 1GP9 A; 1NL2 A; 2KJ4 A; 1TPK A; 1AVG L; 1TBQ J; 2ODY A; 3EDX A; 4DUR A; 1NL1 A; 5CP9 A; 5CSQ A; 1KDU A; 5CS1 A; 2QJ4 A; 1GMO A; 1KIV A; 3HKI A; 1KRN A; 1KI0 A; 2QJ2 A; 2I9B A; 3BT1 A; 2DOH X; 2DOI A; 2SPT A; 1Z8J A; 4BVD A; 2KNF A; 4DY7 A; 1NK1 A; 5CT2 A; 2L0S A; 5CS3 A; 5CS9 A; 1CEA A; 4A5T S; 3BT2 A; 1BHT A; 1JMO L; 2PV9 A; 1CEB A; 4BV5 A; 1PML A; 3E6P L; 4CIK A; 3K65 A; #chains in the Genus database with same CATH homology 5CT3 A; 2B5T A; 4HZH A; 1A0H A; 3BEI A; 2A1D A; 2PK4 A; 3HN4 A; 3SP8 A; 4RKO A; 1URK A; 4D3C A; 3GIS A; 4BVV A; 2PF2 A; 1PMK A; 3KIV A; 3U73 A; 2PUX A; 3BEF A; 1JOU A; 1I71 A; 5HPG A; 4O03 A; 5COE A; 2K51 A; 3NXP A; 1TB6 L; 4IUA A; 1HPJ A; 1TBR J; 1PK2 A; 1JFN A; 2K4R A; 2PF1 A; 3HK6 A; 1HPK A; 2I9A A; 4BVC A; 4BV7 A; 2PGQ A; 1TQ7 A; 4BVW A; 4KIV A; 2HPQ P; 3LAQ A; 1GMN A; 1PK4 A; 2FEB A; 3MKP A; 1I5K A; 3B9F L; 4NZQ A; 1PKR A; 5CT1 A; 2HPP P; 2FD6 A; 1B2I A; 3LU9 A; 5CS5 A; 1GP9 A; 1NL2 A; 2KJ4 A; 1TPK A; 1AVG L; 1TBQ J; 2ODY A; 3EDX A; 4DUR A; 1NL1 A; 5CP9 A; 5CSQ A; 1KDU A; 5CS1 A; 2QJ4 A; 1GMO A; 1KIV A; 3HKI A; 1KRN A; 1KI0 A; 2QJ2 A; 2I9B A; 3BT1 A; 2DOH X; 2DOI A; 2SPT A; 1Z8J A; 4BVD A; 2KNF A; 4DY7 A; 1NK1 A; 5CT2 A; 2L0S A; 5CS3 A; 5CS9 A; 1CEA A; 4A5T S; 3BT2 A; 1BHT A; 1JMO L; 2PV9 A; 1CEB A; 4BV5 A; 1PML A; 3E6P L; 4CIK A; 3K65 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
