2GVQA

Anthranilate phosphoribosyl-transferase (trpd) from s. solfataricus in complex with anthranilate
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
343
structure length
340
Chain Sequence
MNINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVPNAIDTAGTGLGTVNVSTASAILLSLVNPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEIISMNGDVTKLKTIVVKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and mutational analysis of substrate complexation by anthranilate phosphoribosyltransferase from Sulfolobus solfataricus.
pubmed doi rcsb
molecule keywords Anthranilate phosphoribosyltransferase
molecule tags Transferase
source organism Sulfolobus solfataricus
total genus 121
structure length 340
sequence length 343
chains with identical sequence B, C, D
ec nomenclature ec 2.4.2.18: Anthranilate phosphoribosyltransferase.
pdb deposition date 2006-05-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 2gvqA01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 2gvqA02
4OWSA 3QS8A 2BPQA 1BRWA 3H5QA 3TWPA 4OWNA 4ZOKA 5C2LA 1V8GA 4N5VA 5C7SA 3GBRA 4X5BA 4ZOJA 4ZOFA 4OWOA 3R6CA 4GKMA 4EADA 2WK6A 1ZYKA 4OWQA 4YEKA 5BO3A 3QQSA 4X58A 4X59A 5BNEA 4X5AA 4GIUA 4OWMA 1O17A 2TPTA 4M0RA 1OTPA 3QR9A 4N8QA 2GVQA 4GTNA 4OWVA 4X5DA 4X5CA 2J0FA 4OWUA 1KHDA 1UOUA 1ZVWA 3QSAA 4GA5A 5C1RA 4YYYA 3UU1A 4IJ1A 4GA4A 4X5EA 2ELCA 5EY3A 4MUOA 4GA6A 5EP8A 1AZYA 2WK5A 4ZTVA 3R88A 1VQUA 2DSJA 1KGZA 5BYTA 4XR5A 4YI7A 4LHMA 1ZXYA 4EAFA 4X46A 5BO2A 1GXBA 4N93A 4HKMA
chains in the Genus database with same CATH superfamily
4OWSA 3QS8A 2BPQA 1BRWA 3H5QA 3TWPA 4OWNA 4ZOKA 5C2LA 1V8GA 4N5VA 5C7SA 3GBRA 4X5BA 4ZOJA 4ZOFA 4OWOA 3R6CA 4GKMA 4EADA 2WK6A 1ZYKA 4OWQA 4YEKA 5BO3A 3QQSA 4X58A 4X59A 5BNEA 4X5AA 4GIUA 4OWMA 1O17A 2TPTA 4M0RA 1OTPA 3QR9A 4N8QA 2GVQA 4GTNA 4OWVA 4X5DA 4X5CA 2J0FA 4OWUA 1KHDA 1UOUA 1RF8B 1ZVWA 3QSAA 1RRZA 4GA5A 5C1RA 4YYYA 3UU1A 4IJ1A 4GA4A 4X5EA 2ELCA 5EY3A 4F3FC 4MUOA 4GA6A 5EP8A 1AZYA 2WK5A 4ZTVA 3R88A 1VQUA 2DSJA 1KGZA 5BYTA 4XR5A 4YI7A 4LHMA 1ZXYA 4EAFA 4X46A 5BO2A 1GXBA 4N93A 4HKMA
chains in the Genus database with same CATH topology
4OWSA 3QS8A 2BPQA 1BRWA 3H5QA 3TWPA 4OWNA 4ZOKA 5C2LA 1V8GA 4N5VA 5C7SA 3GBRA 4X5BA 4ZOJA 4ZOFA 4OWOA 3R6CA 4GKMA 4EADA 2WK6A 1ZYKA 4OWQA 4YEKA 5BO3A 3QQSA 4X58A 4X59A 5BNEA 4X5AA 4GIUA 4OWMA 1O17A 2TPTA 4M0RA 1OTPA 3QR9A 4N8QA 2GVQA 4GTNA 4OWVA 4X5DA 4X5CA 2J0FA 4OWUA 1KHDA 1UOUA 1ZVWA 3QSAA 4GA5A 5C1RA 4YYYA 3UU1A 4IJ1A 4GA4A 4X5EA 2ELCA 5EY3A 4MUOA 4GA6A 5EP8A 1AZYA 2WK5A 4ZTVA 3R88A 1VQUA 2DSJA 1KGZA 5BYTA 4XR5A 4YI7A 4LHMA 1ZXYA 4EAFA 4X46A 5BO2A 1GXBA 4N93A 4HKMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OWS A;  3QS8 A;  2BPQ A;  1BRW A;  3H5Q A;  3TWP A;  4OWN A;  4ZOK A;  5C2L A;  1V8G A;  4N5V A;  5C7S A;  3GBR A;  4X5B A;  4ZOJ A;  4ZOF A;  4OWO A;  3R6C A;  4GKM A;  4EAD A;  2WK6 A;  1ZYK A;  4OWQ A;  4YEK A;  5BO3 A;  3QQS A;  4X58 A;  4X59 A;  5BNE A;  4X5A A;  4GIU A;  4OWM A;  1O17 A;  2TPT A;  4M0R A;  1OTP A;  3QR9 A;  4N8Q A;  2GVQ A;  4GTN A;  4OWV A;  4X5D A;  4X5C A;  2J0F A;  4OWU A;  1KHD A;  1UOU A;  1ZVW A;  3QSA A;  4GA5 A;  5C1R A;  4YYY A;  3UU1 A;  4IJ1 A;  4GA4 A;  4X5E A;  2ELC A;  5EY3 A;  4MUO A;  4GA6 A;  5EP8 A;  1AZY A;  2WK5 A;  4ZTV A;  3R88 A;  1VQU A;  2DSJ A;  1KGZ A;  5BYT A;  4XR5 A;  4YI7 A;  4LHM A;  1ZXY A;  4EAF A;  4X46 A;  5BO2 A;  1GXB A;  4N93 A;  4HKM A; 
#chains in the Genus database with same CATH topology
 4OWS A;  3QS8 A;  2BPQ A;  1BRW A;  3H5Q A;  3TWP A;  4OWN A;  4ZOK A;  5C2L A;  1V8G A;  4N5V A;  5C7S A;  3GBR A;  4X5B A;  4ZOJ A;  4ZOF A;  4OWO A;  3R6C A;  4GKM A;  4EAD A;  2WK6 A;  1ZYK A;  4OWQ A;  4YEK A;  5BO3 A;  3QQS A;  4X58 A;  4X59 A;  5BNE A;  4X5A A;  4GIU A;  4OWM A;  1O17 A;  2TPT A;  4M0R A;  1OTP A;  3QR9 A;  4N8Q A;  2GVQ A;  4GTN A;  4OWV A;  4X5D A;  4X5C A;  2J0F A;  4OWU A;  1KHD A;  1UOU A;  1RF8 B;  1ZVW A;  3QSA A;  1RRZ A;  4GA5 A;  5C1R A;  4YYY A;  3UU1 A;  4IJ1 A;  4GA4 A;  4X5E A;  2ELC A;  5EY3 A;  4F3F C;  4MUO A;  4GA6 A;  5EP8 A;  1AZY A;  2WK5 A;  4ZTV A;  3R88 A;  1VQU A;  2DSJ A;  1KGZ A;  5BYT A;  4XR5 A;  4YI7 A;  4LHM A;  1ZXY A;  4EAF A;  4X46 A;  5BO2 A;  1GXB A;  4N93 A;  4HKM A; 
#chains in the Genus database with same CATH homology
 4OWS A;  3QS8 A;  2BPQ A;  1BRW A;  3H5Q A;  3TWP A;  4OWN A;  4ZOK A;  5C2L A;  1V8G A;  4N5V A;  5C7S A;  3GBR A;  4X5B A;  4ZOJ A;  4ZOF A;  4OWO A;  3R6C A;  4GKM A;  4EAD A;  2WK6 A;  1ZYK A;  4OWQ A;  4YEK A;  5BO3 A;  3QQS A;  4X58 A;  4X59 A;  5BNE A;  4X5A A;  4GIU A;  4OWM A;  1O17 A;  2TPT A;  4M0R A;  1OTP A;  3QR9 A;  4N8Q A;  2GVQ A;  4GTN A;  4OWV A;  4X5D A;  4X5C A;  2J0F A;  4OWU A;  1KHD A;  1UOU A;  1ZVW A;  3QSA A;  4GA5 A;  5C1R A;  4YYY A;  3UU1 A;  4IJ1 A;  4GA4 A;  4X5E A;  2ELC A;  5EY3 A;  4MUO A;  4GA6 A;  5EP8 A;  1AZY A;  2WK5 A;  4ZTV A;  3R88 A;  1VQU A;  2DSJ A;  1KGZ A;  5BYT A;  4XR5 A;  4YI7 A;  4LHM A;  1ZXY A;  4EAF A;  4X46 A;  5BO2 A;  1GXB A;  4N93 A;  4HKM A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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