4YI7 | Genus

Total Genus 122

Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	122
sequence length	346
structure length	331
Chain Sequence	RANIQQALNHITKNIHLTQAQMEDVMRSIMQGEATEAQIGALMMGLRMKGESIDEITAAARVMRELAIKIDVSDIQYLVDIVGTGGDNLFNVSTASSFVIAAAGATIAKHGNRSSDLLEQAGINLDLDMQQTERCIREMGVGFLFAMKYAVGPRRELGIRSIFNLLGPLTNPAGVKRFVIGVFSDELCRPIAEVMKQLGAEHVMVVHSKDGLDEISLASQTYIAELKNGEVTEWVLNPEDVNIPSQTLSGLIVEDSNASLKLIKDALGRKKSDIGEKAANMIALNAGAGIYVSGLATSYKQGVALAHDIIYGGQALEKMSILSEFTKALKE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__909445746457522__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__909445746457522__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/4YI7/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__909445746457522__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"909445746457522","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/4YI7/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__909445746457522__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Substrate inhibition of protein in tryptophan biosynthesis pathway redirects flux to aromatic catabolism in Acinetobacter baylyi ADP1. rcsb
molecule keywords	Anthranilate phosphoribosyltransferase
molecule tags	Transferase
source organism	Acinetobacter baylyi (strain atcc 33305 / bd413 / adp1)
total genus	122
structure length	331
sequence length	346
ec nomenclature	ec 2.4.2.18: Anthranilate phosphoribosyltransferase.
pdb deposition date	2015-02-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00591	Glycos_transf_3	Glycosyl transferase family, a/b domain
A	PF02885	Glycos_trans_3N	Glycosyl transferase family, helical bundle domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.970.10	Mainly Alpha	Up-down Bundle	Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3	Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	4yi7A01
3.40.1030.10	Alpha Beta	3-Layer(aba) Sandwich	Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	4yi7A02

4YI7A 5C2LA 4OWNA 4OWSA 3R6CA 1GXBA 3QR9A 5C1RA 3H5QA 1ZYKA 4X5BA 5EP8A 3QQSA 4YYYA 4GTNA 4GA6A 4ZTVA 4YEKA 4EADA 3R88A 1V8GA 2ELCA 1ZXYA 2DSJA 2WK6A 4HKMA 1BRWA 4X46A 5BYTA 4X5EA 4OWVA 4OWMA 4N93A 1AZYA 4X5AA 4XR5A 4GIUA 5C7SA 3TWPA 4OWOA 3UU1A 1KGZA 3QS8A 4GA4A 4IJ1A 1OTPA 4X59A 5BO2A 4GKMA 4ZOFA 4EAFA 1UOUA 3GBRA 1ZVWA 4OWQA 4OWUA 4MUOA 5EY3A 4X5CA 2BPQA 2GVQA 4X58A 4GA5A 1KHDA 4ZOJA 4N8QA 4LHMA 2J0FA 3QSAA 4N5VA 5BNEA 1VQUA 2TPTA 4X5DA 2WK5A 1O17A 4M0RA 5BO3A 4ZOKA
chains in the Genus database with same CATH superfamily

4F3FC 4YI7A 5C2LA 4OWNA 4OWSA 3R6CA 1GXBA 3QR9A 5C1RA 3H5QA 1ZYKA 4X5BA 5EP8A 3QQSA 4YYYA 4GTNA 4GA6A 4ZTVA 4YEKA 1RF8B 4EADA 3R88A 1V8GA 2ELCA 1ZXYA 2DSJA 2WK6A 4HKMA 1BRWA 4X46A 5BYTA 4X5EA 4OWVA 4OWMA 4N93A 4XR5A 1AZYA 4X5AA 1RRZA 4GIUA 5C7SA 3TWPA 4OWOA 3UU1A 1KGZA 3QS8A 4GA4A 4IJ1A 1OTPA 4X59A 5BO2A 4GKMA 4ZOFA 4EAFA 1UOUA 3GBRA 1ZVWA 4OWQA 4OWUA 4MUOA 5EY3A 4X5CA 2BPQA 2GVQA 4X58A 4GA5A 1KHDA 4ZOJA 4N8QA 4LHMA 2J0FA 3QSAA 4N5VA 5BNEA 1VQUA 2TPTA 4X5DA 2WK5A 1O17A 4M0RA 5BO3A 4ZOKA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4YI7 A;  5C2L A;  4OWN A;  4OWS A;  3R6C A;  1GXB A;  3QR9 A;  5C1R A;  3H5Q A;  1ZYK A;  4X5B A;  5EP8 A;  3QQS A;  4YYY A;  4GTN A;  4GA6 A;  4ZTV A;  4YEK A;  4EAD A;  3R88 A;  1V8G A;  2ELC A;  1ZXY A;  2DSJ A;  2WK6 A;  4HKM A;  1BRW A;  4X46 A;  5BYT A;  4X5E A;  4OWV A;  4OWM A;  4N93 A;  1AZY A;  4X5A A;  4XR5 A;  4GIU A;  5C7S A;  3TWP A;  4OWO A;  3UU1 A;  1KGZ A;  3QS8 A;  4GA4 A;  4IJ1 A;  1OTP A;  4X59 A;  5BO2 A;  4GKM A;  4ZOF A;  4EAF A;  1UOU A;  3GBR A;  1ZVW A;  4OWQ A;  4OWU A;  4MUO A;  5EY3 A;  4X5C A;  2BPQ A;  2GVQ A;  4X58 A;  4GA5 A;  1KHD A;  4ZOJ A;  4N8Q A;  4LHM A;  2J0F A;  3QSA A;  4N5V A;  5BNE A;  1VQU A;  2TPT A;  4X5D A;  2WK5 A;  1O17 A;  4M0R A;  5BO3 A;  4ZOK A; 
#chains in the Genus database with same CATH topology
 4F3F C;  4YI7 A;  5C2L A;  4OWN A;  4OWS A;  3R6C A;  1GXB A;  3QR9 A;  5C1R A;  3H5Q A;  1ZYK A;  4X5B A;  5EP8 A;  3QQS A;  4YYY A;  4GTN A;  4GA6 A;  4ZTV A;  4YEK A;  1RF8 B;  4EAD A;  3R88 A;  1V8G A;  2ELC A;  1ZXY A;  2DSJ A;  2WK6 A;  4HKM A;  1BRW A;  4X46 A;  5BYT A;  4X5E A;  4OWV A;  4OWM A;  4N93 A;  4XR5 A;  1AZY A;  4X5A A;  1RRZ A;  4GIU A;  5C7S A;  3TWP A;  4OWO A;  3UU1 A;  1KGZ A;  3QS8 A;  4GA4 A;  4IJ1 A;  1OTP A;  4X59 A;  5BO2 A;  4GKM A;  4ZOF A;  4EAF A;  1UOU A;  3GBR A;  1ZVW A;  4OWQ A;  4OWU A;  4MUO A;  5EY3 A;  4X5C A;  2BPQ A;  2GVQ A;  4X58 A;  4GA5 A;  1KHD A;  4ZOJ A;  4N8Q A;  4LHM A;  2J0F A;  3QSA A;  4N5V A;  5BNE A;  1VQU A;  2TPT A;  4X5D A;  2WK5 A;  1O17 A;  4M0R A;  5BO3 A;  4ZOK A; 
#chains in the Genus database with same CATH homology
 4YI7 A;  5C2L A;  4OWN A;  4OWS A;  3R6C A;  1GXB A;  3QR9 A;  5C1R A;  3H5Q A;  1ZYK A;  4X5B A;  5EP8 A;  3QQS A;  4YYY A;  4GTN A;  4GA6 A;  4ZTV A;  4YEK A;  4EAD A;  3R88 A;  1V8G A;  2ELC A;  1ZXY A;  2DSJ A;  2WK6 A;  4HKM A;  1BRW A;  4X46 A;  5BYT A;  4X5E A;  4OWV A;  4OWM A;  4N93 A;  1AZY A;  4X5A A;  4XR5 A;  4GIU A;  5C7S A;  3TWP A;  4OWO A;  3UU1 A;  1KGZ A;  3QS8 A;  4GA4 A;  4IJ1 A;  1OTP A;  4X59 A;  5BO2 A;  4GKM A;  4ZOF A;  4EAF A;  1UOU A;  3GBR A;  1ZVW A;  4OWQ A;  4OWU A;  4MUO A;  5EY3 A;  4X5C A;  2BPQ A;  2GVQ A;  4X58 A;  4GA5 A;  1KHD A;  4ZOJ A;  4N8Q A;  4LHM A;  2J0F A;  3QSA A;  4N5V A;  5BNE A;  1VQU A;  2TPT A;  4X5D A;  2WK5 A;  1O17 A;  4M0R A;  5BO3 A;  4ZOK A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4YI7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations