2BL7 | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	79
structure length	79
Chain Sequence	KNAKQIVHELYNDISISKDPKYSDILEVMQKVYLKLEKQKYELDPSPLINRLVNYLYFTAYTNKIRFTEYQEELIRNMS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Immune system
source organism	Enterococcus faecium
publication title	1.6-A Crystal Structure of Enta-Im: A Bacterial Immunity Protein Conferring Immunity to the Antimicrobial Activity of the Pediocin-Like Bacteriocin Enterocin A pubmed doi rcsb
molecule keywords	ENTEROCINE A IMMUNITY PROTEIN
total genus	31
structure length	79
sequence length	79
ec nomenclature
pdb deposition date	2005-03-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08951	EntA_Immun	Enterocin A Immunity

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1440.50	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	Ta0600-like	2bl7A00

2BL8A 1TDPA 2FU2A 2QSBA 2BL7A 2QZGA
chains in the Genus database with same CATH superfamily

4OAUC 2FU2A 4JCVE 4GXTA 2RIOA 4G75A 2F6MB 4Q9VA 4AS3A 2JB3A 4O1OA 4DWLA 3P23A 3DO9A 2L1LB 4YZ9A 3JSBA 2XTRA 3DA3A 2JBWA 2JB2A 1U5KA 3LJ1A 4YZCA 3FBVA 3FVVA 2BL8A 2V1CC 3AJFA 3IAM1 2XTQA 3VA9A 4OAVB 5HGIA 2YFAA 4NV2A 3I9V1 3LJ0A 2A2DA 4NV5A 4YZDA 3UITA 2ETDA 5LNK1 2JAEA 3B55A 4Z7HA 2HGKA 4PL3A 4G76A 2MJFB 3L0IA 2QGMA 2F66B 2RADA 1TDPA 4Z7GA 1W3SA 3F4MA 2V6EA 2QZGA 2CAZB 2RLDA 2P22B 2K19A 2YFBA 2IP6A 2KKMA 3IAS1 4O1PA 4U6RA 1SJ8A 3KP9A 1JQOA 2GSCA 2FEFA 4I1TA 3DA4A 2FUG1 3LJ2A 2XMXA 2BL7A 4HFVA 4PL4A 3SDJA 2ZRRA 4HEA1 3Q8DA 3FNBA 4PL5A 2ZW3A 2E8GA 2JB1A 2QSBA 1YO7A 4AS2A 2A2CA
chains in the Genus database with same CATH topology

2BL8A 1TDPA 2FU2A 2QSBA 2BL7A 2QZGA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2BL8 A;  1TDP A;  2FU2 A;  2QSB A;  2BL7 A;  2QZG A; 
#chains in the Genus database with same CATH topology
 4OAU C;  2FU2 A;  4JCV E;  4GXT A;  2RIO A;  4G75 A;  2F6M B;  4Q9V A;  4AS3 A;  2JB3 A;  4O1O A;  4DWL A;  3P23 A;  3DO9 A;  2L1L B;  4YZ9 A;  3JSB A;  2XTR A;  3DA3 A;  2JBW A;  2JB2 A;  1U5K A;  3LJ1 A;  4YZC A;  3FBV A;  3FVV A;  2BL8 A;  2V1C C;  3AJF A;  3IAM 1;  2XTQ A;  3VA9 A;  4OAV B;  5HGI A;  2YFA A;  4NV2 A;  3I9V 1;  3LJ0 A;  2A2D A;  4NV5 A;  4YZD A;  3UIT A;  2ETD A;  5LNK 1;  2JAE A;  3B55 A;  4Z7H A;  2HGK A;  4PL3 A;  4G76 A;  2MJF B;  3L0I A;  2QGM A;  2F66 B;  2RAD A;  1TDP A;  4Z7G A;  1W3S A;  3F4M A;  2V6E A;  2QZG A;  2CAZ B;  2RLD A;  2P22 B;  2K19 A;  2YFB A;  2IP6 A;  2KKM A;  3IAS 1;  4O1P A;  4U6R A;  1SJ8 A;  3KP9 A;  1JQO A;  2GSC A;  2FEF A;  4I1T A;  3DA4 A;  2FUG 1;  3LJ2 A;  2XMX A;  2BL7 A;  4HFV A;  4PL4 A;  3SDJ A;  2ZRR A;  4HEA 1;  3Q8D A;  3FNB A;  4PL5 A;  2ZW3 A;  2E8G A;  2JB1 A;  2QSB A;  1YO7 A;  4AS2 A;  2A2C A; 
#chains in the Genus database with same CATH homology
 2BL8 A;  1TDP A;  2FU2 A;  2QSB A;  2BL7 A;  2QZG A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2BL7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations