The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
136
|
sequence length |
392
|
structure length |
374
|
Chain Sequence |
LKRQDYKIKFNNKDMDFCFNWMLGIGQIIGMSAGELFYIASGIRDGNPTDWCKRFNEHADYLEDEVERVKKVGYRDLISHLYFSACFSIRAALQFTDPKDSEFMENFRRMEKLFMLAVDNSKIPLKSIEVPFEGELLPGYAIISEDKAQDTLIVVGGGDTSREDLFYMLGYSGWEHDYNVLMVDLPGQGKNPNQGLHFEVDARAAISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEKDKRIKAWIASTPIYDVAEVFRISFSSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMRQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Acylaminoacyl peptidase SMU_737
|
| publication title |
Crystal structure of acylaminoacyl-peptidase SMU_737 from Streptococcus mutans UA159
rcsb |
| source organism |
Streptococcus mutans
|
| molecule tags |
Hydrolase
|
| total genus |
136
|
| structure length |
374
|
| sequence length |
392
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2008-12-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF12146 | Hydrolase_4 | Serine aminopeptidase, S33 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | acylaminoacyl peptidase | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold |
