2F66B

Structure of the escrt-i endosomal trafficking complex
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
111
structure length
111
Chain Sequence
SQLFHDEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEAFADTYNITASNAITRLERGIPITAEH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Suppressor protein STP22 of temperature-sensitive alpha-fact
publication title Structural and functional organization of the ESCRT-I trafficking complex.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 39
structure length 111
sequence length 111
chains with identical sequence E
ec nomenclature
pdb deposition date 2005-11-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.200 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2f66B00
2CAZB 2F66B 2F6MB 2P22B
chains in the Genus database with same CATH superfamily
5HGIA 2E8GA 4G76A 2RADA 2MJFB 2ETDA 3UITA 4Z7HA 3AJFA 4G75A 2JAEA 3IAM1 3JSBA 4PL3A 2BL7A 2P22B 2ZRRA 3KP9A 2ZW3A 4O1OA 4Z7GA 2KKMA 4YZCA 2IP6A 4U6RA 4AS3A 2F6MB 1TDPA 1U5KA 4OAUC 2QGMA 2GSCA 2QZGA 2A2DA 5LNK1 2YFBA 1YO7A 2CAZB 4HEA1 4O1PA 4I1TA 2F66B 4NV2A 1JQOA 2A2CA 2L1LB 2HGKA 4PL5A 2K19A 2QSBA 4Q9VA 2FEFA 1W3SA 2RIOA 4NV5A 2FUG1 3FVVA 4JCVE 3DA3A 2JB2A 2XTRA 3LJ2A 3F4MA 2V6EA 3P23A 3DA4A 3DO9A 3I9V1 4HFVA 3Q8DA 3LJ1A 4YZDA 2FU2A 2YFAA 2BL8A 2JBWA 2RLDA 2JB3A 3FBVA 2V1CC 3LJ0A 3VA9A 2XTQA 3L0IA 4AS2A 1SJ8A 3IAS1 4YZ9A 4DWLA 4PL4A 4GXTA 3B55A 4OAVB 2XMXA 3FNBA 3SDJA 2JB1A
chains in the Genus database with same CATH topology
5HGIA 2E8GA 4G76A 2MJFB 3UITA 4Z7HA 3AJFA 4G75A 2JAEA 3IAM1 3JSBA 4PL3A 2P22B 2ZRRA 3KP9A 4O1OA 4Z7GA 2KKMA 4YZCA 2IP6A 4U6RA 4AS3A 2F6MB 1U5KA 4OAUC 2A2DA 5LNK1 2YFBA 1YO7A 2CAZB 4HEA1 4O1PA 4I1TA 2F66B 4NV2A 2A2CA 2L1LB 4PL5A 2K19A 4Q9VA 1W3SA 2RIOA 4NV5A 2FUG1 4JCVE 3DA3A 2JB2A 2XTRA 3LJ2A 3F4MA 2V6EA 3P23A 3DA4A 3DO9A 3I9V1 4HFVA 3Q8DA 3LJ1A 4YZDA 2YFAA 2JB3A 3FBVA 2V1CC 3LJ0A 3VA9A 2XTQA 3L0IA 4AS2A 1SJ8A 3IAS1 4YZ9A 4DWLA 4PL4A 4GXTA 4OAVB 2XMXA 3SDJA 2JB1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CAZ B;  2F66 B;  2F6M B;  2P22 B; 
#chains in the Genus database with same CATH topology
 5HGI A;  2E8G A;  4G76 A;  2RAD A;  2MJF B;  2ETD A;  3UIT A;  4Z7H A;  3AJF A;  4G75 A;  2JAE A;  3IAM 1;  3JSB A;  4PL3 A;  2BL7 A;  2P22 B;  2ZRR A;  3KP9 A;  2ZW3 A;  4O1O A;  4Z7G A;  2KKM A;  4YZC A;  2IP6 A;  4U6R A;  4AS3 A;  2F6M B;  1TDP A;  1U5K A;  4OAU C;  2QGM A;  2GSC A;  2QZG A;  2A2D A;  5LNK 1;  2YFB A;  1YO7 A;  2CAZ B;  4HEA 1;  4O1P A;  4I1T A;  2F66 B;  4NV2 A;  1JQO A;  2A2C A;  2L1L B;  2HGK A;  4PL5 A;  2K19 A;  2QSB A;  4Q9V A;  2FEF A;  1W3S A;  2RIO A;  4NV5 A;  2FUG 1;  3FVV A;  4JCV E;  3DA3 A;  2JB2 A;  2XTR A;  3LJ2 A;  3F4M A;  2V6E A;  3P23 A;  3DA4 A;  3DO9 A;  3I9V 1;  4HFV A;  3Q8D A;  3LJ1 A;  4YZD A;  2FU2 A;  2YFA A;  2BL8 A;  2JBW A;  2RLD A;  2JB3 A;  3FBV A;  2V1C C;  3LJ0 A;  3VA9 A;  2XTQ A;  3L0I A;  4AS2 A;  1SJ8 A;  3IAS 1;  4YZ9 A;  4DWL A;  4PL4 A;  4GXT A;  3B55 A;  4OAV B;  2XMX A;  3FNB A;  3SDJ A;  2JB1 A; 
#chains in the Genus database with same CATH homology
 5HGI A;  2E8G A;  4G76 A;  2MJF B;  3UIT A;  4Z7H A;  3AJF A;  4G75 A;  2JAE A;  3IAM 1;  3JSB A;  4PL3 A;  2P22 B;  2ZRR A;  3KP9 A;  4O1O A;  4Z7G A;  2KKM A;  4YZC A;  2IP6 A;  4U6R A;  4AS3 A;  2F6M B;  1U5K A;  4OAU C;  2A2D A;  5LNK 1;  2YFB A;  1YO7 A;  2CAZ B;  4HEA 1;  4O1P A;  4I1T A;  2F66 B;  4NV2 A;  2A2C A;  2L1L B;  4PL5 A;  2K19 A;  4Q9V A;  1W3S A;  2RIO A;  4NV5 A;  2FUG 1;  4JCV E;  3DA3 A;  2JB2 A;  2XTR A;  3LJ2 A;  3F4M A;  2V6E A;  3P23 A;  3DA4 A;  3DO9 A;  3I9V 1;  4HFV A;  3Q8D A;  3LJ1 A;  4YZD A;  2YFA A;  2JB3 A;  3FBV A;  2V1C C;  3LJ0 A;  3VA9 A;  2XTQ A;  3L0I A;  4AS2 A;  1SJ8 A;  3IAS 1;  4YZ9 A;  4DWL A;  4PL4 A;  4GXT A;  4OAV B;  2XMX A;  3SDJ A;  2JB1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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