2BL8A

1.6 angstrom crystal structure of enta-im: a bacterial immunity protein conferring immunity to the antimicrobial activity of the pediocin-like bacteriocin, enterocin a
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
100
structure length
93
Chain Sequence
NAKQIVHELYNDISISKDPKYSDILEVLQKVYLKLEPSPLINRLVNYLYFTAYTNKIRFTEYQEELIRNLSEIGRTAGINGLYRADYGDKSQF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title 1.6-A Crystal Structure of Enta-Im: A Bacterial Immunity Protein Conferring Immunity to the Antimicrobial Activity of the Pediocin-Like Bacteriocin Enterocin A
pubmed doi rcsb
molecule tags Bacterial protein
source organism Enterococcus faecium
molecule keywords ENTEROCINE A IMMUNITY PROTEIN
total genus 31
structure length 93
sequence length 100
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08951 EntA_Immun Enterocin A Immunity
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.50 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) Ta0600-like 2bl8A00
2BL7A 2BL8A 2FU2A 1TDPA 2QZGA 2QSBA
chains in the Genus database with same CATH superfamily
2YFAA 2XTRA 4Z7GA 4YZCA 4PL5A 4O1OA 2A2DA 2FEFA 3SDJA 2MJFB 2QZGA 3DO9A 2FUG1 3IAS1 1YO7A 4YZ9A 3Q8DA 3IAM1 3DA3A 2ETDA 2K19A 2QSBA 4GXTA 2JBWA 2QGMA 4I1TA 4U6RA 3UITA 2FU2A 2RIOA 1TDPA 2JB2A 2BL7A 3AJFA 2CAZB 2XTQA 4DWLA 2HGKA 3B55A 3DA4A 2JB1A 2JB3A 2P22B 4PL4A 2E8GA 2ZRRA 3LJ1A 2L1LB 5HGIA 4NV2A 5LNK1 4OAUC 3VA9A 4YZDA 4PL3A 1JQOA 2BL8A 2GSCA 3FBVA 2V1CC 3P23A 2V6EA 4G75A 3F4MA 3I9V1 4HFVA 2YFBA 4JCVE 2RLDA 2JAEA 2F66B 2RADA 2F6MB 3FVVA 4OAVB 3L0IA 4AS2A 3LJ0A 1W3SA 3JSBA 1U5KA 2A2CA 4O1PA 3LJ2A 2KKMA 4NV5A 2ZW3A 4G76A 1SJ8A 4AS3A 2XMXA 3FNBA 2IP6A 4Q9VA 4HEA1 3KP9A 4Z7HA
chains in the Genus database with same CATH topology
2BL7A 2BL8A 2FU2A 1TDPA 2QZGA 2QSBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BL7 A;  2BL8 A;  2FU2 A;  1TDP A;  2QZG A;  2QSB A; 
#chains in the Genus database with same CATH topology
 2YFA A;  2XTR A;  4Z7G A;  4YZC A;  4PL5 A;  4O1O A;  2A2D A;  2FEF A;  3SDJ A;  2MJF B;  2QZG A;  3DO9 A;  2FUG 1;  3IAS 1;  1YO7 A;  4YZ9 A;  3Q8D A;  3IAM 1;  3DA3 A;  2ETD A;  2K19 A;  2QSB A;  4GXT A;  2JBW A;  2QGM A;  4I1T A;  4U6R A;  3UIT A;  2FU2 A;  2RIO A;  1TDP A;  2JB2 A;  2BL7 A;  3AJF A;  2CAZ B;  2XTQ A;  4DWL A;  2HGK A;  3B55 A;  3DA4 A;  2JB1 A;  2JB3 A;  2P22 B;  4PL4 A;  2E8G A;  2ZRR A;  3LJ1 A;  2L1L B;  5HGI A;  4NV2 A;  5LNK 1;  4OAU C;  3VA9 A;  4YZD A;  4PL3 A;  1JQO A;  2BL8 A;  2GSC A;  3FBV A;  2V1C C;  3P23 A;  2V6E A;  4G75 A;  3F4M A;  3I9V 1;  4HFV A;  2YFB A;  4JCV E;  2RLD A;  2JAE A;  2F66 B;  2RAD A;  2F6M B;  3FVV A;  4OAV B;  3L0I A;  4AS2 A;  3LJ0 A;  1W3S A;  3JSB A;  1U5K A;  2A2C A;  4O1P A;  3LJ2 A;  2KKM A;  4NV5 A;  2ZW3 A;  4G76 A;  1SJ8 A;  4AS3 A;  2XMX A;  3FNB A;  2IP6 A;  4Q9V A;  4HEA 1;  3KP9 A;  4Z7H A; 
#chains in the Genus database with same CATH homology
 2BL7 A;  2BL8 A;  2FU2 A;  1TDP A;  2QZG A;  2QSB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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