2F6MB

Structure of a vps23-c:vps28-n subcomplex
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
107
structure length
107
Chain Sequence
MDISQLFHDEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEAFADTYNITASNAITRLERG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and functional organization of the ESCRT-I trafficking complex.
pubmed doi rcsb
molecule tags Transport protein
source organism Saccharomyces cerevisiae
molecule keywords Suppressor protein STP22 of temperature-sensitive alpha-fact
total genus 33
structure length 107
sequence length 107
chains with identical sequence D
ec nomenclature
pdb deposition date 2005-11-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.200 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2f6mB00
2CAZB 2P22B 2F6MB 2F66B
chains in the Genus database with same CATH superfamily
2F66B 3UITA 3IAM1 4HEA1 4O1PA 3L0IA 4PL5A 3Q8DA 4DWLA 3SDJA 2XMXA 3LJ0A 4OAVB 2XTRA 3LJ2A 1TDPA 2QSBA 3B55A 4U6RA 4AS2A 2YFAA 2IP6A 2FEFA 2V1CC 2QZGA 1SJ8A 4Z7GA 3IAS1 4G76A 5HGIA 5LNK1 2FU2A 3AJFA 2ETDA 4I1TA 4YZDA 4Z7HA 1W3SA 4O1OA 2FUG1 3LJ1A 4Q9VA 4HFVA 4NV5A 1U5KA 3FBVA 3JSBA 2HGKA 2L1LB 2QGMA 2RLDA 2JB1A 2MJFB 2BL7A 4PL4A 2K19A 2BL8A 3DA3A 4JCVE 2YFBA 2A2CA 4PL3A 3P23A 2JB2A 2XTQA 3F4MA 3DO9A 4G75A 4NV2A 4GXTA 1YO7A 3I9V1 2RADA 2E8GA 2V6EA 2JBWA 4OAUC 2GSCA 2CAZB 4YZCA 3FNBA 2P22B 2ZRRA 3KP9A 2JB3A 4AS3A 4YZ9A 2A2DA 2F6MB 3VA9A 2KKMA 2ZW3A 2JAEA 3FVVA 1JQOA 3DA4A 2RIOA
chains in the Genus database with same CATH topology
2F66B 3UITA 3IAM1 4HEA1 4O1PA 3L0IA 4PL5A 3Q8DA 4DWLA 3SDJA 2XMXA 3LJ0A 4OAVB 2XTRA 3LJ2A 4U6RA 4AS2A 2YFAA 2IP6A 2V1CC 4Z7GA 1SJ8A 3IAS1 4G76A 5HGIA 5LNK1 3AJFA 4I1TA 4YZDA 4Z7HA 1W3SA 4O1OA 2FUG1 3LJ1A 4Q9VA 4HFVA 4NV5A 1U5KA 3FBVA 3JSBA 2L1LB 2JB1A 2MJFB 4PL4A 2K19A 3DA3A 4JCVE 2YFBA 2A2CA 4PL3A 3P23A 2JB2A 2XTQA 3F4MA 3DO9A 4G75A 4NV2A 4GXTA 1YO7A 3I9V1 2E8GA 2V6EA 4OAUC 2CAZB 4YZCA 2P22B 2ZRRA 3KP9A 2JB3A 4AS3A 4YZ9A 2A2DA 2F6MB 3VA9A 2KKMA 2JAEA 3DA4A 2RIOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CAZ B;  2P22 B;  2F6M B;  2F66 B; 
#chains in the Genus database with same CATH topology
 2F66 B;  3UIT A;  3IAM 1;  4HEA 1;  4O1P A;  3L0I A;  4PL5 A;  3Q8D A;  4DWL A;  3SDJ A;  2XMX A;  3LJ0 A;  4OAV B;  2XTR A;  3LJ2 A;  1TDP A;  2QSB A;  3B55 A;  4U6R A;  4AS2 A;  2YFA A;  2IP6 A;  2FEF A;  2V1C C;  2QZG A;  1SJ8 A;  4Z7G A;  3IAS 1;  4G76 A;  5HGI A;  5LNK 1;  2FU2 A;  3AJF A;  2ETD A;  4I1T A;  4YZD A;  4Z7H A;  1W3S A;  4O1O A;  2FUG 1;  3LJ1 A;  4Q9V A;  4HFV A;  4NV5 A;  1U5K A;  3FBV A;  3JSB A;  2HGK A;  2L1L B;  2QGM A;  2RLD A;  2JB1 A;  2MJF B;  2BL7 A;  4PL4 A;  2K19 A;  2BL8 A;  3DA3 A;  4JCV E;  2YFB A;  2A2C A;  4PL3 A;  3P23 A;  2JB2 A;  2XTQ A;  3F4M A;  3DO9 A;  4G75 A;  4NV2 A;  4GXT A;  1YO7 A;  3I9V 1;  2RAD A;  2E8G A;  2V6E A;  2JBW A;  4OAU C;  2GSC A;  2CAZ B;  4YZC A;  3FNB A;  2P22 B;  2ZRR A;  3KP9 A;  2JB3 A;  4AS3 A;  4YZ9 A;  2A2D A;  2F6M B;  3VA9 A;  2KKM A;  2ZW3 A;  2JAE A;  3FVV A;  1JQO A;  3DA4 A;  2RIO A; 
#chains in the Genus database with same CATH homology
 2F66 B;  3UIT A;  3IAM 1;  4HEA 1;  4O1P A;  3L0I A;  4PL5 A;  3Q8D A;  4DWL A;  3SDJ A;  2XMX A;  3LJ0 A;  4OAV B;  2XTR A;  3LJ2 A;  4U6R A;  4AS2 A;  2YFA A;  2IP6 A;  2V1C C;  4Z7G A;  1SJ8 A;  3IAS 1;  4G76 A;  5HGI A;  5LNK 1;  3AJF A;  4I1T A;  4YZD A;  4Z7H A;  1W3S A;  4O1O A;  2FUG 1;  3LJ1 A;  4Q9V A;  4HFV A;  4NV5 A;  1U5K A;  3FBV A;  3JSB A;  2L1L B;  2JB1 A;  2MJF B;  4PL4 A;  2K19 A;  3DA3 A;  4JCV E;  2YFB A;  2A2C A;  4PL3 A;  3P23 A;  2JB2 A;  2XTQ A;  3F4M A;  3DO9 A;  4G75 A;  4NV2 A;  4GXT A;  1YO7 A;  3I9V 1;  2E8G A;  2V6E A;  4OAU C;  2CAZ B;  4YZC A;  2P22 B;  2ZRR A;  3KP9 A;  2JB3 A;  4AS3 A;  4YZ9 A;  2A2D A;  2F6M B;  3VA9 A;  2KKM A;  2JAE A;  3DA4 A;  2RIO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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