2F6MB

Structure of a vps23-c:vps28-n subcomplex
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
107
structure length
107
Chain Sequence
MDISQLFHDEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEAFADTYNITASNAITRLERG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and functional organization of the ESCRT-I trafficking complex.
pubmed doi rcsb
molecule tags Transport protein
source organism Saccharomyces cerevisiae
molecule keywords Suppressor protein STP22 of temperature-sensitive alpha-fact
total genus 33
structure length 107
sequence length 107
chains with identical sequence D
ec nomenclature
pdb deposition date 2005-11-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.200 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2f6mB00
2F66B 2P22B 2CAZB 2F6MB
chains in the Genus database with same CATH superfamily
4YZDA 2V1CC 2MJFB 4G75A 4Z7GA 2BL7A 4PL3A 2FUG1 4PL5A 3AJFA 2KKMA 3IAS1 4GXTA 3JSBA 1JQOA 2F66B 3P23A 4O1PA 5LNK1 2JBWA 2E8GA 1YO7A 3LJ2A 4JCVE 1TDPA 2JB2A 4AS3A 3LJ0A 3SDJA 2GSCA 3UITA 2YFBA 4PL4A 2CAZB 4G76A 2HGKA 4DWLA 4NV2A 2XTQA 3B55A 2F6MB 2QGMA 2RLDA 1W3SA 3VA9A 4OAUC 2BL8A 3FNBA 4AS2A 4I1TA 2ZW3A 2RADA 4Q9VA 3FVVA 2XTRA 3DO9A 4YZCA 2A2CA 2QSBA 2IP6A 2L1LB 4YZ9A 3Q8DA 4HFVA 3DA3A 3LJ1A 2XMXA 2FU2A 1U5KA 3I9V1 2FEFA 4OAVB 2JB1A 4NV5A 5HGIA 2P22B 3KP9A 3F4MA 4O1OA 2RIOA 3FBVA 2A2DA 3L0IA 4Z7HA 3DA4A 2YFAA 2JAEA 2JB3A 3IAM1 2V6EA 4HEA1 2ETDA 2K19A 4U6RA 2QZGA 1SJ8A 2ZRRA
chains in the Genus database with same CATH topology
4YZDA 2V1CC 2MJFB 4G75A 4Z7GA 4PL3A 2FUG1 4PL5A 3AJFA 2KKMA 3IAS1 4GXTA 3JSBA 2F66B 3P23A 4O1PA 5LNK1 2E8GA 1YO7A 3LJ2A 4JCVE 2JB2A 4AS3A 3LJ0A 3SDJA 3UITA 2YFBA 4PL4A 2CAZB 4G76A 4DWLA 4NV2A 2XTQA 2F6MB 1W3SA 3VA9A 4OAUC 4AS2A 4I1TA 4Q9VA 2XTRA 3DO9A 4YZCA 2A2CA 2IP6A 2L1LB 4YZ9A 3Q8DA 4HFVA 3DA3A 3LJ1A 2XMXA 1U5KA 3I9V1 4OAVB 2JB1A 4NV5A 5HGIA 2P22B 3KP9A 3F4MA 4O1OA 2RIOA 3FBVA 2A2DA 3L0IA 4Z7HA 3DA4A 2YFAA 2JAEA 2JB3A 3IAM1 2V6EA 4HEA1 2K19A 4U6RA 1SJ8A 2ZRRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F66 B;  2P22 B;  2CAZ B;  2F6M B; 
#chains in the Genus database with same CATH topology
 4YZD A;  2V1C C;  2MJF B;  4G75 A;  4Z7G A;  2BL7 A;  4PL3 A;  2FUG 1;  4PL5 A;  3AJF A;  2KKM A;  3IAS 1;  4GXT A;  3JSB A;  1JQO A;  2F66 B;  3P23 A;  4O1P A;  5LNK 1;  2JBW A;  2E8G A;  1YO7 A;  3LJ2 A;  4JCV E;  1TDP A;  2JB2 A;  4AS3 A;  3LJ0 A;  3SDJ A;  2GSC A;  3UIT A;  2YFB A;  4PL4 A;  2CAZ B;  4G76 A;  2HGK A;  4DWL A;  4NV2 A;  2XTQ A;  3B55 A;  2F6M B;  2QGM A;  2RLD A;  1W3S A;  3VA9 A;  4OAU C;  2BL8 A;  3FNB A;  4AS2 A;  4I1T A;  2ZW3 A;  2RAD A;  4Q9V A;  3FVV A;  2XTR A;  3DO9 A;  4YZC A;  2A2C A;  2QSB A;  2IP6 A;  2L1L B;  4YZ9 A;  3Q8D A;  4HFV A;  3DA3 A;  3LJ1 A;  2XMX A;  2FU2 A;  1U5K A;  3I9V 1;  2FEF A;  4OAV B;  2JB1 A;  4NV5 A;  5HGI A;  2P22 B;  3KP9 A;  3F4M A;  4O1O A;  2RIO A;  3FBV A;  2A2D A;  3L0I A;  4Z7H A;  3DA4 A;  2YFA A;  2JAE A;  2JB3 A;  3IAM 1;  2V6E A;  4HEA 1;  2ETD A;  2K19 A;  4U6R A;  2QZG A;  1SJ8 A;  2ZRR A; 
#chains in the Genus database with same CATH homology
 4YZD A;  2V1C C;  2MJF B;  4G75 A;  4Z7G A;  4PL3 A;  2FUG 1;  4PL5 A;  3AJF A;  2KKM A;  3IAS 1;  4GXT A;  3JSB A;  2F66 B;  3P23 A;  4O1P A;  5LNK 1;  2E8G A;  1YO7 A;  3LJ2 A;  4JCV E;  2JB2 A;  4AS3 A;  3LJ0 A;  3SDJ A;  3UIT A;  2YFB A;  4PL4 A;  2CAZ B;  4G76 A;  4DWL A;  4NV2 A;  2XTQ A;  2F6M B;  1W3S A;  3VA9 A;  4OAU C;  4AS2 A;  4I1T A;  4Q9V A;  2XTR A;  3DO9 A;  4YZC A;  2A2C A;  2IP6 A;  2L1L B;  4YZ9 A;  3Q8D A;  4HFV A;  3DA3 A;  3LJ1 A;  2XMX A;  1U5K A;  3I9V 1;  4OAV B;  2JB1 A;  4NV5 A;  5HGI A;  2P22 B;  3KP9 A;  3F4M A;  4O1O A;  2RIO A;  3FBV A;  2A2D A;  3L0I A;  4Z7H A;  3DA4 A;  2YFA A;  2JAE A;  2JB3 A;  3IAM 1;  2V6E A;  4HEA 1;  2K19 A;  4U6R A;  1SJ8 A;  2ZRR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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