2FEF | Genus

Total Genus 112

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	112
sequence length	288
structure length	281
Chain Sequence	LTLDNRLAEALPLWRNLARTDRAPRRNIDLADWKADWRELIAALDRFSRSHGYRQPFAAQGHAALENAWAWGQAAENASTLLLKAIDRGLAGAELRSIYLETAALWLDYSRLLGAARDSLREQGETAPALAPRTGQYPFALQLLAMGVLLDAQELIPALVEEVLQFDTDRLLDYLGAAALGLTSASEETFHPRPFGQLRAFFEESDAQALAPYLQSQYREFFQLSPKAQKKTRRLTGPYAWGWWAMEVSALGVLYGWDDGVLRASPHYLGDLVDYARARGD

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Pseudomonas aeruginosa
publication title	The Crystal Structure of Protein PA2201 from Pseudomonas aeruginosa rcsb
molecule keywords	hypothetical protein PA2201
total genus	112
structure length	281
sequence length	288
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2005-12-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08929	DUF1911	Domain of unknown function (DUF1911)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3920.10	Mainly Alpha	Orthogonal Bundle	PA2201 C-terminal domain-like	PA2201 C-terminal domain-like	2fefA02
1.20.1440.70	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	PA2201 N-terminal domain-like	2fefA01

2FEFA
chains in the Genus database with same CATH superfamily

3I9V1 2KKMA 3FVVA 3IAM1 4JCVE 1JQOA 4O1PA 2V6EA 2QZGA 4PL4A 2JB1A 2BL7A 2JAEA 2QSBA 2ETDA 4I1TA 2CAZB 4Z7HA 4G76A 2IP6A 2JB2A 2YFBA 2BL8A 2A2DA 3DO9A 4HEA1 2YFAA 2QGMA 4Z7GA 2FU2A 2ZW3A 3IAS1 4PL5A 4OAVB 3Q8DA 3B55A 5HGIA 2F6MB 2RLDA 3LJ1A 2XTRA 4G75A 3DA4A 4OAUC 2XTQA 2RIOA 2P22B 3P23A 4YZDA 4YZCA 1SJ8A 3SDJA 2JBWA 4NV5A 2F66B 4Q9VA 3JSBA 2FUG1 1YO7A 2RADA 2L1LB 2MJFB 4YZ9A 2ZRRA 3LJ2A 2FEFA 3FNBA 2V1CC 3F4MA 2A2CA 2E8GA 1U5KA 3UITA 3DA3A 3L0IA 4O1OA 2GSCA 3AJFA 3LJ0A 4AS3A 4AS2A 5LNK1 2K19A 1W3SA 2HGKA 3VA9A 4GXTA 4DWLA 1TDPA 4U6RA 4NV2A 3FBVA 2JB3A 3KP9A 4PL3A 2XMXA 4HFVA
chains in the Genus database with same CATH topology

2FEFA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2FEF A; 
#chains in the Genus database with same CATH topology
 3I9V 1;  2KKM A;  3FVV A;  3IAM 1;  4JCV E;  1JQO A;  4O1P A;  2V6E A;  2QZG A;  4PL4 A;  2JB1 A;  2BL7 A;  2JAE A;  2QSB A;  2ETD A;  4I1T A;  2CAZ B;  4Z7H A;  4G76 A;  2IP6 A;  2JB2 A;  2YFB A;  2BL8 A;  2A2D A;  3DO9 A;  4HEA 1;  2YFA A;  2QGM A;  4Z7G A;  2FU2 A;  2ZW3 A;  3IAS 1;  4PL5 A;  4OAV B;  3Q8D A;  3B55 A;  5HGI A;  2F6M B;  2RLD A;  3LJ1 A;  2XTR A;  4G75 A;  3DA4 A;  4OAU C;  2XTQ A;  2RIO A;  2P22 B;  3P23 A;  4YZD A;  4YZC A;  1SJ8 A;  3SDJ A;  2JBW A;  4NV5 A;  2F66 B;  4Q9V A;  3JSB A;  2FUG 1;  1YO7 A;  2RAD A;  2L1L B;  2MJF B;  4YZ9 A;  2ZRR A;  3LJ2 A;  2FEF A;  3FNB A;  2V1C C;  3F4M A;  2A2C A;  2E8G A;  1U5K A;  3UIT A;  3DA3 A;  3L0I A;  4O1O A;  2GSC A;  3AJF A;  3LJ0 A;  4AS3 A;  4AS2 A;  5LNK 1;  2K19 A;  1W3S A;  2HGK A;  3VA9 A;  4GXT A;  4DWL A;  1TDP A;  4U6R A;  4NV2 A;  3FBV A;  2JB3 A;  3KP9 A;  4PL3 A;  2XMX A;  4HFV A; 
#chains in the Genus database with same CATH homology
 2FEF A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2FEFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations