2MJFB

Solution structure of the complex between the yeast rsa1 and hit1 proteins
Total Genus 26
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
95
structure length
95
Chain Sequence
MNKTLKTKAFDDIYQNSAELQELLKYNTVKFHLAKVYRILSSTVNDGSSGKMNSDLQKELAVNYLNTLRYGGIHYNEAIEEFCQILLDKLNAVKK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Protein Hit1, a novel box C/D snoRNP assembly factor, controls cellular concentration of the scaffolding protein Rsa1 by direct interaction.
pubmed doi rcsb
molecule tags Protein binding
source organism Saccharomyces cerevisiae
molecule keywords Ribosome assembly 1 protein
total genus 26
structure length 95
sequence length 95
ec nomenclature
pdb deposition date 2014-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF18268 Hit1_C Hit1 C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.260 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2mjfB00
2MJFB
chains in the Genus database with same CATH superfamily
4U6RA 3UITA 2A2CA 4G76A 3I9V1 3Q8DA 4Z7GA 2HGKA 3P23A 4G75A 2QSBA 2JBWA 3IAS1 5HGIA 2JB2A 4NV5A 4PL3A 3VA9A 4Z7HA 3FBVA 4Q9VA 3F4MA 4PL4A 3IAM1 4OAUC 4O1PA 2JAEA 1TDPA 4YZCA 3DA4A 3SDJA 1W3SA 5LNK1 1YO7A 4HFVA 2XTQA 2F6MB 3DO9A 2RADA 4YZDA 2YFAA 3FVVA 2GSCA 4DWLA 3LJ2A 2A2DA 3JSBA 2ZW3A 2ZRRA 2FUG1 2QGMA 3KP9A 2F66B 4NV2A 3AJFA 2JB1A 2K19A 4GXTA 2JB3A 4YZ9A 2FU2A 2P22B 2ETDA 4JCVE 1JQOA 3LJ1A 2BL8A 2IP6A 3B55A 4AS3A 3L0IA 3LJ0A 4OAVB 2RLDA 2KKMA 2V6EA 2CAZB 2YFBA 4O1OA 2RIOA 2MJFB 2XMXA 2XTRA 4AS2A 2BL7A 2QZGA 2L1LB 2E8GA 4HEA1 3FNBA 4PL5A 4I1TA 3DA3A 2V1CC 2FEFA 1SJ8A 1U5KA
chains in the Genus database with same CATH topology
4U6RA 3UITA 2A2CA 4G76A 3I9V1 3Q8DA 4Z7GA 3P23A 4G75A 3IAS1 5HGIA 2JB2A 4NV5A 4PL3A 3VA9A 4Z7HA 3FBVA 4Q9VA 3F4MA 4PL4A 3IAM1 4OAUC 4O1PA 2JAEA 4YZCA 3DA4A 3SDJA 1W3SA 5LNK1 1YO7A 4HFVA 2XTQA 2F6MB 3DO9A 4YZDA 2YFAA 4DWLA 3LJ2A 2A2DA 3JSBA 2ZRRA 2FUG1 3KP9A 2F66B 4NV2A 3AJFA 2JB1A 2K19A 4GXTA 2JB3A 4YZ9A 2P22B 4JCVE 3LJ1A 2IP6A 4AS3A 3L0IA 3LJ0A 4OAVB 2KKMA 2V6EA 2CAZB 2YFBA 4O1OA 2RIOA 2MJFB 2XMXA 2XTRA 4AS2A 2L1LB 2E8GA 4HEA1 4PL5A 4I1TA 3DA3A 2V1CC 1SJ8A 1U5KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MJF B; 
#chains in the Genus database with same CATH topology
 4U6R A;  3UIT A;  2A2C A;  4G76 A;  3I9V 1;  3Q8D A;  4Z7G A;  2HGK A;  3P23 A;  4G75 A;  2QSB A;  2JBW A;  3IAS 1;  5HGI A;  2JB2 A;  4NV5 A;  4PL3 A;  3VA9 A;  4Z7H A;  3FBV A;  4Q9V A;  3F4M A;  4PL4 A;  3IAM 1;  4OAU C;  4O1P A;  2JAE A;  1TDP A;  4YZC A;  3DA4 A;  3SDJ A;  1W3S A;  5LNK 1;  1YO7 A;  4HFV A;  2XTQ A;  2F6M B;  3DO9 A;  2RAD A;  4YZD A;  2YFA A;  3FVV A;  2GSC A;  4DWL A;  3LJ2 A;  2A2D A;  3JSB A;  2ZW3 A;  2ZRR A;  2FUG 1;  2QGM A;  3KP9 A;  2F66 B;  4NV2 A;  3AJF A;  2JB1 A;  2K19 A;  4GXT A;  2JB3 A;  4YZ9 A;  2FU2 A;  2P22 B;  2ETD A;  4JCV E;  1JQO A;  3LJ1 A;  2BL8 A;  2IP6 A;  3B55 A;  4AS3 A;  3L0I A;  3LJ0 A;  4OAV B;  2RLD A;  2KKM A;  2V6E A;  2CAZ B;  2YFB A;  4O1O A;  2RIO A;  2MJF B;  2XMX A;  2XTR A;  4AS2 A;  2BL7 A;  2QZG A;  2L1L B;  2E8G A;  4HEA 1;  3FNB A;  4PL5 A;  4I1T A;  3DA3 A;  2V1C C;  2FEF A;  1SJ8 A;  1U5K A; 
#chains in the Genus database with same CATH homology
 4U6R A;  3UIT A;  2A2C A;  4G76 A;  3I9V 1;  3Q8D A;  4Z7G A;  3P23 A;  4G75 A;  3IAS 1;  5HGI A;  2JB2 A;  4NV5 A;  4PL3 A;  3VA9 A;  4Z7H A;  3FBV A;  4Q9V A;  3F4M A;  4PL4 A;  3IAM 1;  4OAU C;  4O1P A;  2JAE A;  4YZC A;  3DA4 A;  3SDJ A;  1W3S A;  5LNK 1;  1YO7 A;  4HFV A;  2XTQ A;  2F6M B;  3DO9 A;  4YZD A;  2YFA A;  4DWL A;  3LJ2 A;  2A2D A;  3JSB A;  2ZRR A;  2FUG 1;  3KP9 A;  2F66 B;  4NV2 A;  3AJF A;  2JB1 A;  2K19 A;  4GXT A;  2JB3 A;  4YZ9 A;  2P22 B;  4JCV E;  3LJ1 A;  2IP6 A;  4AS3 A;  3L0I A;  3LJ0 A;  4OAV B;  2KKM A;  2V6E A;  2CAZ B;  2YFB A;  4O1O A;  2RIO A;  2MJF B;  2XMX A;  2XTR A;  4AS2 A;  2L1L B;  2E8G A;  4HEA 1;  4PL5 A;  4I1T A;  3DA3 A;  2V1C C;  1SJ8 A;  1U5K A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...