2MJFB

Solution structure of the complex between the yeast rsa1 and hit1 proteins
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
95
structure length
95
Chain Sequence
MNKTLKTKAFDDIYQNSAELQELLKYNTVKFHLAKVYRILSSTVNDGSSGKMNSDLQKELAVNYLNTLRYGGIHYNEAIEEFCQILLDKLNAVKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Protein Hit1, a novel box C/D snoRNP assembly factor, controls cellular concentration of the scaffolding protein Rsa1 by direct interaction.
pubmed doi rcsb
molecule tags Protein binding
source organism Saccharomyces cerevisiae
molecule keywords Ribosome assembly 1 protein
total genus 26
structure length 95
sequence length 95
ec nomenclature
pdb deposition date 2014-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF18268 Hit1_C Hit1 C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.260 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2mjfB00
2MJFB
chains in the Genus database with same CATH superfamily
3IAM1 2QGMA 2QZGA 2XMXA 4I1TA 2F6MB 1YO7A 2V1CC 5LNK1 4HEA1 2BL7A 4PL3A 2FEFA 2FUG1 3LJ1A 3UITA 4U6RA 4DWLA 4PL4A 2YFAA 2JB3A 2ETDA 3FNBA 2BL8A 4AS3A 3B55A 3IAS1 2RLDA 2L1LB 3DA4A 3LJ2A 4G75A 2HGKA 4HFVA 1SJ8A 4AS2A 2JB2A 4G76A 3KP9A 5HGIA 3JSBA 3FBVA 4YZCA 3AJFA 4Z7GA 2P22B 2IP6A 4PL5A 2K19A 1U5KA 4GXTA 2XTRA 1JQOA 2GSCA 2YFBA 3Q8DA 1W3SA 2RIOA 4O1OA 2MJFB 2RADA 3DO9A 2JB1A 1TDPA 2F66B 3DA3A 4Q9VA 4YZDA 2XTQA 2V6EA 4JCVE 2QSBA 4YZ9A 2CAZB 4OAVB 2A2DA 3VA9A 2JBWA 2ZW3A 3F4MA 3L0IA 2FU2A 4Z7HA 3P23A 3I9V1 3SDJA 2E8GA 2KKMA 4NV2A 2ZRRA 3FVVA 4O1PA 2A2CA 2JAEA 4OAUC 4NV5A 3LJ0A
chains in the Genus database with same CATH topology
3IAM1 2XMXA 4I1TA 2F6MB 1YO7A 2V1CC 5LNK1 4HEA1 4PL3A 2FUG1 3LJ1A 3UITA 4U6RA 4DWLA 4PL4A 2YFAA 2JB3A 4AS3A 3IAS1 2L1LB 3DA4A 3LJ2A 4G75A 4HFVA 1SJ8A 4AS2A 2JB2A 4G76A 3KP9A 5HGIA 3JSBA 3FBVA 4YZCA 3AJFA 4Z7GA 2P22B 2IP6A 4PL5A 2K19A 1U5KA 4GXTA 2XTRA 2YFBA 3Q8DA 1W3SA 2RIOA 4O1OA 2MJFB 3DO9A 2JB1A 2F66B 3DA3A 4Q9VA 4YZDA 2XTQA 2V6EA 4JCVE 4YZ9A 2CAZB 4OAVB 2A2DA 3VA9A 3F4MA 3L0IA 4Z7HA 3P23A 3I9V1 3SDJA 2E8GA 2KKMA 4NV2A 2ZRRA 4O1PA 2A2CA 2JAEA 4OAUC 4NV5A 3LJ0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MJF B; 
#chains in the Genus database with same CATH topology
 3IAM 1;  2QGM A;  2QZG A;  2XMX A;  4I1T A;  2F6M B;  1YO7 A;  2V1C C;  5LNK 1;  4HEA 1;  2BL7 A;  4PL3 A;  2FEF A;  2FUG 1;  3LJ1 A;  3UIT A;  4U6R A;  4DWL A;  4PL4 A;  2YFA A;  2JB3 A;  2ETD A;  3FNB A;  2BL8 A;  4AS3 A;  3B55 A;  3IAS 1;  2RLD A;  2L1L B;  3DA4 A;  3LJ2 A;  4G75 A;  2HGK A;  4HFV A;  1SJ8 A;  4AS2 A;  2JB2 A;  4G76 A;  3KP9 A;  5HGI A;  3JSB A;  3FBV A;  4YZC A;  3AJF A;  4Z7G A;  2P22 B;  2IP6 A;  4PL5 A;  2K19 A;  1U5K A;  4GXT A;  2XTR A;  1JQO A;  2GSC A;  2YFB A;  3Q8D A;  1W3S A;  2RIO A;  4O1O A;  2MJF B;  2RAD A;  3DO9 A;  2JB1 A;  1TDP A;  2F66 B;  3DA3 A;  4Q9V A;  4YZD A;  2XTQ A;  2V6E A;  4JCV E;  2QSB A;  4YZ9 A;  2CAZ B;  4OAV B;  2A2D A;  3VA9 A;  2JBW A;  2ZW3 A;  3F4M A;  3L0I A;  2FU2 A;  4Z7H A;  3P23 A;  3I9V 1;  3SDJ A;  2E8G A;  2KKM A;  4NV2 A;  2ZRR A;  3FVV A;  4O1P A;  2A2C A;  2JAE A;  4OAU C;  4NV5 A;  3LJ0 A; 
#chains in the Genus database with same CATH homology
 3IAM 1;  2XMX A;  4I1T A;  2F6M B;  1YO7 A;  2V1C C;  5LNK 1;  4HEA 1;  4PL3 A;  2FUG 1;  3LJ1 A;  3UIT A;  4U6R A;  4DWL A;  4PL4 A;  2YFA A;  2JB3 A;  4AS3 A;  3IAS 1;  2L1L B;  3DA4 A;  3LJ2 A;  4G75 A;  4HFV A;  1SJ8 A;  4AS2 A;  2JB2 A;  4G76 A;  3KP9 A;  5HGI A;  3JSB A;  3FBV A;  4YZC A;  3AJF A;  4Z7G A;  2P22 B;  2IP6 A;  4PL5 A;  2K19 A;  1U5K A;  4GXT A;  2XTR A;  2YFB A;  3Q8D A;  1W3S A;  2RIO A;  4O1O A;  2MJF B;  3DO9 A;  2JB1 A;  2F66 B;  3DA3 A;  4Q9V A;  4YZD A;  2XTQ A;  2V6E A;  4JCV E;  4YZ9 A;  2CAZ B;  4OAV B;  2A2D A;  3VA9 A;  3F4M A;  3L0I A;  4Z7H A;  3P23 A;  3I9V 1;  3SDJ A;  2E8G A;  2KKM A;  4NV2 A;  2ZRR A;  4O1P A;  2A2C A;  2JAE A;  4OAU C;  4NV5 A;  3LJ0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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