2QGMA

Crystal structure of succinoglycan biosynthesis protein at the resolution 1.7 a. northeast structural genomics consortium target bcr136.
Total Genus 124
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
413
structure length
392
Chain Sequence
SGQSVQKNIVKSIQSQANPLKTIEPSKPFEDLKPLKKMIGNAQYVGLGENTHGSSEIFTMKFRLVKYLVTEMGFTNFAMEEDWGNGLKLNEYIQTGKGNPREFLKLLYPTDEIIAMIEWMKDYNADPSNKKKIQFIGLDLKALDQGSFNKVIDYVRLHRPDLLAEVEENYKELSSFTGSIQEYMKLTPKLKEKFKANAERVARLLKDEEYIWAKATASAIEKFTTMLLPNDYPSIIKLHEQYLADHAMWAQETFGGKTMVWAHNIHIAKGIIDEKLYPYVAGQFLKERLDNNYVTIGSTTTEGNFTLYSEYGKITTDTIPQDVKSFNYTLGKVPYKMFLLDNRHLKGQAEKWVKAKRPLLSIGGQIVYFDTSLLEQFDIIFHIRKTSPSHIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of succinoglycan biosynthesis protein at the resolution 1.7 A. Northeast Structural Genomics Consortium target BcR136.
rcsb
molecule tags Biosynthetic protein
source organism Bacillus cereus atcc 14579
molecule keywords Succinoglycan biosynthesis protein
total genus 124
structure length 392
sequence length 413
ec nomenclature
pdb deposition date 2007-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05139 Erythro_esteras Erythromycin esterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.30 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) Biosynthetic Protein domain 2qgmA03
3.30.1870.10 Alpha Beta 2-Layer Sandwich EreA/ChaN-like, small alpha-beta sandwich EreA-like; domain 2 2qgmA02
3.40.1660.10 Alpha Beta 3-Layer(aba) Sandwich EreA/ChaN-like fold EreA-like (biosynthetic domain) 2qgmA01
3B55A 2RADA 2QGMA
chains in the Genus database with same CATH superfamily
3AJFA 2BL7A 1W3SA 2JAEA 4AS3A 2ZW3A 2E8GA 2JB2A 3KP9A 3FVVA 2V1CC 2V6EA 5LNK1 3LJ2A 2QGMA 2XTRA 2YFAA 4PL4A 2JB3A 3DA4A 1TDPA 4U6RA 2YFBA 1YO7A 3P23A 4O1PA 4HEA1 2ETDA 3B55A 4HFVA 2FU2A 2K19A 3IAM1 4G75A 4OAVB 2FEFA 4YZCA 1SJ8A 2A2CA 4GXTA 3FNBA 2ZRRA 4NV2A 2XTQA 1U5KA 2KKMA 2MJFB 3VA9A 4DWLA 4AS2A 3L0IA 2L1LB 2F66B 4Q9VA 4PL5A 3DA3A 2BL8A 3I9V1 3SDJA 2FUG1 2IP6A 3LJ0A 4YZ9A 3F4MA 4OAUC 3LJ1A 3DO9A 1JQOA 2P22B 3UITA 2HGKA 2GSCA 4O1OA 3JSBA 3IAS1 2F6MB 2QZGA 2RADA 4G76A 3FBVA 2CAZB 2RLDA 4Z7HA 4Z7GA 4JCVE 2RIOA 5HGIA 4NV5A 4PL3A 2XMXA 2JBWA 2JB1A 2A2DA 2QSBA 4I1TA 3Q8DA 4YZDA
chains in the Genus database with same CATH topology
3B55A 2RADA 2QGMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B55 A;  2RAD A;  2QGM A; 
#chains in the Genus database with same CATH topology
 3AJF A;  2BL7 A;  1W3S A;  2JAE A;  4AS3 A;  2ZW3 A;  2E8G A;  2JB2 A;  3KP9 A;  3FVV A;  2V1C C;  2V6E A;  5LNK 1;  3LJ2 A;  2QGM A;  2XTR A;  2YFA A;  4PL4 A;  2JB3 A;  3DA4 A;  1TDP A;  4U6R A;  2YFB A;  1YO7 A;  3P23 A;  4O1P A;  4HEA 1;  2ETD A;  3B55 A;  4HFV A;  2FU2 A;  2K19 A;  3IAM 1;  4G75 A;  4OAV B;  2FEF A;  4YZC A;  1SJ8 A;  2A2C A;  4GXT A;  3FNB A;  2ZRR A;  4NV2 A;  2XTQ A;  1U5K A;  2KKM A;  2MJF B;  3VA9 A;  4DWL A;  4AS2 A;  3L0I A;  2L1L B;  2F66 B;  4Q9V A;  4PL5 A;  3DA3 A;  2BL8 A;  3I9V 1;  3SDJ A;  2FUG 1;  2IP6 A;  3LJ0 A;  4YZ9 A;  3F4M A;  4OAU C;  3LJ1 A;  3DO9 A;  1JQO A;  2P22 B;  3UIT A;  2HGK A;  2GSC A;  4O1O A;  3JSB A;  3IAS 1;  2F6M B;  2QZG A;  2RAD A;  4G76 A;  3FBV A;  2CAZ B;  2RLD A;  4Z7H A;  4Z7G A;  4JCV E;  2RIO A;  5HGI A;  4NV5 A;  4PL3 A;  2XMX A;  2JBW A;  2JB1 A;  2A2D A;  2QSB A;  4I1T A;  3Q8D A;  4YZD A; 
#chains in the Genus database with same CATH homology
 3B55 A;  2RAD A;  2QGM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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