2RLDA

Crystal structure of a protein with unknown function from s23 ribosomal protein family (bt_0352) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a resolution
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
116
structure length
114
Chain Sequence
GMREDMKDNVVKDKSLEFAVRIVNLYKFLVNEQKEFVMSKQILRSGTSIGANIREAEQSRADFINKLNIALKEANETEYWLELLIRTEYITREQYESINNDSTEINKLLISIIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of uncharacterized protein (NP_809265.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.70 A resolution
rcsb
molecule tags Unknown function
source organism Bacteroides thetaiotaomicron vpi-5482
molecule keywords Uncharacterized protein
total genus 49
structure length 114
sequence length 116
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2007-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05635 23S_rRNA_IVP 23S rRNA-intervening sequence protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.60 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) 23S rRNA-intervening sequence 2rldA00
2GSCA 2RLDA
chains in the Genus database with same CATH superfamily
4PL5A 2ZW3A 3FBVA 4HEA1 2ETDA 3LJ1A 1W3SA 2K19A 1YO7A 4Q9VA 2V6EA 4NV2A 4G75A 2IP6A 2FUG1 3JSBA 2JAEA 2YFAA 3SDJA 2QZGA 3DA4A 3L0IA 2F66B 3VA9A 2BL8A 2L1LB 2V1CC 4OAUC 3DA3A 2XMXA 1TDPA 2ZRRA 3DO9A 2QGMA 4OAVB 3LJ0A 2A2CA 2CAZB 4YZ9A 2JB3A 3IAS1 2GSCA 2RADA 4O1OA 2RIOA 2P22B 4O1PA 2F6MB 4G76A 2XTRA 3IAM1 2KKMA 4DWLA 3I9V1 4PL4A 5LNK1 2FU2A 3FNBA 4JCVE 2QSBA 3F4MA 2FEFA 2JBWA 4PL3A 2JB1A 3FVVA 2JB2A 4U6RA 4Z7HA 2E8GA 2XTQA 4I1TA 5HGIA 1U5KA 2YFBA 2BL7A 3P23A 4Z7GA 3KP9A 2HGKA 4YZDA 1JQOA 4HFVA 4GXTA 1SJ8A 2RLDA 3AJFA 3Q8DA 3UITA 2A2DA 3LJ2A 2MJFB 3B55A 4AS2A 4NV5A 4AS3A 4YZCA
chains in the Genus database with same CATH topology
2GSCA 2RLDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GSC A;  2RLD A; 
#chains in the Genus database with same CATH topology
 4PL5 A;  2ZW3 A;  3FBV A;  4HEA 1;  2ETD A;  3LJ1 A;  1W3S A;  2K19 A;  1YO7 A;  4Q9V A;  2V6E A;  4NV2 A;  4G75 A;  2IP6 A;  2FUG 1;  3JSB A;  2JAE A;  2YFA A;  3SDJ A;  2QZG A;  3DA4 A;  3L0I A;  2F66 B;  3VA9 A;  2BL8 A;  2L1L B;  2V1C C;  4OAU C;  3DA3 A;  2XMX A;  1TDP A;  2ZRR A;  3DO9 A;  2QGM A;  4OAV B;  3LJ0 A;  2A2C A;  2CAZ B;  4YZ9 A;  2JB3 A;  3IAS 1;  2GSC A;  2RAD A;  4O1O A;  2RIO A;  2P22 B;  4O1P A;  2F6M B;  4G76 A;  2XTR A;  3IAM 1;  2KKM A;  4DWL A;  3I9V 1;  4PL4 A;  5LNK 1;  2FU2 A;  3FNB A;  4JCV E;  2QSB A;  3F4M A;  2FEF A;  2JBW A;  4PL3 A;  2JB1 A;  3FVV A;  2JB2 A;  4U6R A;  4Z7H A;  2E8G A;  2XTQ A;  4I1T A;  5HGI A;  1U5K A;  2YFB A;  2BL7 A;  3P23 A;  4Z7G A;  3KP9 A;  2HGK A;  4YZD A;  1JQO A;  4HFV A;  4GXT A;  1SJ8 A;  2RLD A;  3AJF A;  3Q8D A;  3UIT A;  2A2D A;  3LJ2 A;  2MJF B;  3B55 A;  4AS2 A;  4NV5 A;  4AS3 A;  4YZC A; 
#chains in the Genus database with same CATH homology
 2GSC A;  2RLD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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