2RLDA

Crystal structure of a protein with unknown function from s23 ribosomal protein family (bt_0352) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a resolution
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
116
structure length
114
Chain Sequence
GMREDMKDNVVKDKSLEFAVRIVNLYKFLVNEQKEFVMSKQILRSGTSIGANIREAEQSRADFINKLNIALKEANETEYWLELLIRTEYITREQYESINNDSTEINKLLISIIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of uncharacterized protein (NP_809265.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.70 A resolution
rcsb
molecule tags Unknown function
source organism Bacteroides thetaiotaomicron vpi-5482
molecule keywords Uncharacterized protein
total genus 49
structure length 114
sequence length 116
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2007-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05635 23S_rRNA_IVP 23S rRNA-intervening sequence protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.60 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) 23S rRNA-intervening sequence 2rldA00
2GSCA 2RLDA
chains in the Genus database with same CATH superfamily
3B55A 4O1OA 3SDJA 1JQOA 2FU2A 2L1LB 2V6EA 4YZ9A 2IP6A 1W3SA 3FNBA 2BL8A 2E8GA 4AS2A 3LJ1A 2YFBA 3Q8DA 2QZGA 2BL7A 3VA9A 4HEA1 4YZCA 2YFAA 2V1CC 2XTRA 3UITA 4OAUC 4Z7GA 2F6MB 2K19A 2FEFA 2F66B 4I1TA 2ZW3A 5LNK1 2QSBA 2JB1A 2ZRRA 4PL4A 3IAM1 1YO7A 3FVVA 4G76A 2FUG1 2RADA 2A2CA 2RIOA 4U6RA 3L0IA 4NV2A 4PL3A 4AS3A 2XTQA 2HGKA 3KP9A 4NV5A 4JCVE 4G75A 4YZDA 5HGIA 2KKMA 3DA3A 2MJFB 3DO9A 4PL5A 2CAZB 2P22B 3DA4A 4Q9VA 2JB2A 4O1PA 3JSBA 4Z7HA 1TDPA 2JAEA 3IAS1 3LJ0A 3AJFA 3LJ2A 3I9V1 4DWLA 3FBVA 2QGMA 2A2DA 2GSCA 4HFVA 2JBWA 3F4MA 4GXTA 2RLDA 1U5KA 2JB3A 3P23A 1SJ8A 4OAVB 2ETDA 2XMXA
chains in the Genus database with same CATH topology
2GSCA 2RLDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GSC A;  2RLD A; 
#chains in the Genus database with same CATH topology
 3B55 A;  4O1O A;  3SDJ A;  1JQO A;  2FU2 A;  2L1L B;  2V6E A;  4YZ9 A;  2IP6 A;  1W3S A;  3FNB A;  2BL8 A;  2E8G A;  4AS2 A;  3LJ1 A;  2YFB A;  3Q8D A;  2QZG A;  2BL7 A;  3VA9 A;  4HEA 1;  4YZC A;  2YFA A;  2V1C C;  2XTR A;  3UIT A;  4OAU C;  4Z7G A;  2F6M B;  2K19 A;  2FEF A;  2F66 B;  4I1T A;  2ZW3 A;  5LNK 1;  2QSB A;  2JB1 A;  2ZRR A;  4PL4 A;  3IAM 1;  1YO7 A;  3FVV A;  4G76 A;  2FUG 1;  2RAD A;  2A2C A;  2RIO A;  4U6R A;  3L0I A;  4NV2 A;  4PL3 A;  4AS3 A;  2XTQ A;  2HGK A;  3KP9 A;  4NV5 A;  4JCV E;  4G75 A;  4YZD A;  5HGI A;  2KKM A;  3DA3 A;  2MJF B;  3DO9 A;  4PL5 A;  2CAZ B;  2P22 B;  3DA4 A;  4Q9V A;  2JB2 A;  4O1P A;  3JSB A;  4Z7H A;  1TDP A;  2JAE A;  3IAS 1;  3LJ0 A;  3AJF A;  3LJ2 A;  3I9V 1;  4DWL A;  3FBV A;  2QGM A;  2A2D A;  2GSC A;  4HFV A;  2JBW A;  3F4M A;  4GXT A;  2RLD A;  1U5K A;  2JB3 A;  3P23 A;  1SJ8 A;  4OAV B;  2ETD A;  2XMX A; 
#chains in the Genus database with same CATH homology
 2GSC A;  2RLD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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