2RLDA

Crystal structure of a protein with unknown function from s23 ribosomal protein family (bt_0352) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a resolution
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
116
structure length
114
Chain Sequence
GMREDMKDNVVKDKSLEFAVRIVNLYKFLVNEQKEFVMSKQILRSGTSIGANIREAEQSRADFINKLNIALKEANETEYWLELLIRTEYITREQYESINNDSTEINKLLISIIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of uncharacterized protein (NP_809265.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.70 A resolution
rcsb
molecule tags Unknown function
source organism Bacteroides thetaiotaomicron vpi-5482
molecule keywords Uncharacterized protein
total genus 49
structure length 114
sequence length 116
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2007-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05635 23S_rRNA_IVP 23S rRNA-intervening sequence protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.60 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) 23S rRNA-intervening sequence 2rldA00
2GSCA 2RLDA
chains in the Genus database with same CATH superfamily
3DO9A 3KP9A 4PL4A 2ZW3A 3AJFA 2JAEA 2FU2A 2A2DA 3B55A 2MJFB 2V6EA 4HFVA 4PL5A 4Z7GA 1JQOA 4NV2A 2QSBA 2XTQA 3LJ2A 2RIOA 2RADA 2FEFA 3IAS1 2GSCA 4G76A 4AS2A 3SDJA 1TDPA 3I9V1 2V1CC 4JCVE 4NV5A 3FBVA 4GXTA 4AS3A 2HGKA 2F6MB 4U6RA 5HGIA 4O1OA 4OAVB 2JB1A 4YZDA 4Z7HA 2KKMA 2A2CA 2L1LB 3P23A 2XMXA 3FVVA 1U5KA 3L0IA 4O1PA 2YFBA 3JSBA 2FUG1 4I1TA 4PL3A 2BL7A 2E8GA 3UITA 2IP6A 2CAZB 3VA9A 2ETDA 2QGMA 3IAM1 3DA4A 4HEA1 4G75A 2YFAA 3DA3A 4DWLA 2F66B 2JB2A 2JBWA 2P22B 2ZRRA 2XTRA 5LNK1 3F4MA 2K19A 4OAUC 4YZ9A 2BL8A 2RLDA 4YZCA 2JB3A 4Q9VA 3LJ0A 2QZGA 3Q8DA 1SJ8A 1YO7A 3LJ1A 3FNBA 1W3SA
chains in the Genus database with same CATH topology
2GSCA 2RLDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GSC A;  2RLD A; 
#chains in the Genus database with same CATH topology
 3DO9 A;  3KP9 A;  4PL4 A;  2ZW3 A;  3AJF A;  2JAE A;  2FU2 A;  2A2D A;  3B55 A;  2MJF B;  2V6E A;  4HFV A;  4PL5 A;  4Z7G A;  1JQO A;  4NV2 A;  2QSB A;  2XTQ A;  3LJ2 A;  2RIO A;  2RAD A;  2FEF A;  3IAS 1;  2GSC A;  4G76 A;  4AS2 A;  3SDJ A;  1TDP A;  3I9V 1;  2V1C C;  4JCV E;  4NV5 A;  3FBV A;  4GXT A;  4AS3 A;  2HGK A;  2F6M B;  4U6R A;  5HGI A;  4O1O A;  4OAV B;  2JB1 A;  4YZD A;  4Z7H A;  2KKM A;  2A2C A;  2L1L B;  3P23 A;  2XMX A;  3FVV A;  1U5K A;  3L0I A;  4O1P A;  2YFB A;  3JSB A;  2FUG 1;  4I1T A;  4PL3 A;  2BL7 A;  2E8G A;  3UIT A;  2IP6 A;  2CAZ B;  3VA9 A;  2ETD A;  2QGM A;  3IAM 1;  3DA4 A;  4HEA 1;  4G75 A;  2YFA A;  3DA3 A;  4DWL A;  2F66 B;  2JB2 A;  2JBW A;  2P22 B;  2ZRR A;  2XTR A;  5LNK 1;  3F4M A;  2K19 A;  4OAU C;  4YZ9 A;  2BL8 A;  2RLD A;  4YZC A;  2JB3 A;  4Q9V A;  3LJ0 A;  2QZG A;  3Q8D A;  1SJ8 A;  1YO7 A;  3LJ1 A;  3FNB A;  1W3S A; 
#chains in the Genus database with same CATH homology
 2GSC A;  2RLD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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