2YFAA

X-ray structure of mcps ligand binding domain in complex with malate
Total Genus 118

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
236
structure length
236
Chain Sequence
GSHMGDIGQLNKDLTDLRIARLQYMIANGDDTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRSDALYQIQLER

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (47-73)AH5 (199-223)AH2 (77-100)AH3 (104-161)AH4 (166-195)AH6 (227-281)TI'1 (73-76)O1 (196-198)3H1 (224-226)EMPTYUpdating...
connected with : NaN
molecule tags Receptor
source organism Pseudomonas putida
publication title Evidence for Chemoreceptors with Bimodular Ligand-Binding Regions Harboring Two Signal-Binding Sites.
pubmed doi rcsb
molecule keywords METHYL-ACCEPTING CHEMOTAXIS TRANSDUCER
total genus 118
structure length 236
sequence length 236
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-04-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2yfaA01
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2yfaA02
3VA9A 2YFBA 2YFAA
chains in the Genus database with same CATH superfamily
4OAUC 2FU2A 4JCVE 4GXTA 2RIOA 4G75A 2F6MB 4Q9VA 4AS3A 2JB3A 4O1OA 4DWLA 3P23A 3DO9A 2L1LB 4YZ9A 3JSBA 2XTRA 3DA3A 2JBWA 2JB2A 1U5KA 3LJ1A 4YZCA 3FBVA 3FVVA 2BL8A 2V1CC 3AJFA 3IAM1 2XTQA 3VA9A 4OAVB 5HGIA 2YFAA 4NV2A 3I9V1 3LJ0A 2A2DA 4NV5A 4YZDA 3UITA 2ETDA 5LNK1 2JAEA 3B55A 4Z7HA 2HGKA 4PL3A 4G76A 2MJFB 3L0IA 2QGMA 2F66B 2RADA 1TDPA 4Z7GA 1W3SA 3F4MA 2V6EA 2QZGA 2CAZB 2RLDA 2P22B 2K19A 2YFBA 2IP6A 2KKMA 3IAS1 4O1PA 4U6RA 1SJ8A 3KP9A 1JQOA 2GSCA 2FEFA 4I1TA 3DA4A 2FUG1 3LJ2A 2XMXA 2BL7A 4HFVA 4PL4A 3SDJA 2ZRRA 4HEA1 3Q8DA 3FNBA 4PL5A 2ZW3A 2E8GA 2JB1A 2QSBA 1YO7A 4AS2A 2A2CA
chains in the Genus database with same CATH topology
4OAUC 4JCVE 4GXTA 2RIOA 4G75A 2F6MB 4Q9VA 4AS3A 2JB3A 4O1OA 4DWLA 3P23A 3DO9A 2L1LB 4YZ9A 3JSBA 2XTRA 3DA3A 2JB2A 1U5KA 3LJ1A 4YZCA 3FBVA 2V1CC 3AJFA 3IAM1 2XTQA 3VA9A 4OAVB 5HGIA 2YFAA 4NV2A 3I9V1 3LJ0A 2A2DA 4NV5A 4YZDA 3UITA 5LNK1 2JAEA 4Z7HA 4PL3A 4G76A 2MJFB 3L0IA 2F66B 4Z7GA 1W3SA 3F4MA 2V6EA 2CAZB 2P22B 2K19A 2YFBA 2IP6A 2KKMA 3IAS1 4O1PA 4U6RA 1SJ8A 3KP9A 4I1TA 3DA4A 2FUG1 3LJ2A 2XMXA 4HFVA 4PL4A 3SDJA 2ZRRA 4HEA1 3Q8DA 4PL5A 2E8GA 2JB1A 1YO7A 4AS2A 2A2CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VA9 A;  2YFB A;  2YFA A; 
#chains in the Genus database with same CATH topology
 4OAU C;  2FU2 A;  4JCV E;  4GXT A;  2RIO A;  4G75 A;  2F6M B;  4Q9V A;  4AS3 A;  2JB3 A;  4O1O A;  4DWL A;  3P23 A;  3DO9 A;  2L1L B;  4YZ9 A;  3JSB A;  2XTR A;  3DA3 A;  2JBW A;  2JB2 A;  1U5K A;  3LJ1 A;  4YZC A;  3FBV A;  3FVV A;  2BL8 A;  2V1C C;  3AJF A;  3IAM 1;  2XTQ A;  3VA9 A;  4OAV B;  5HGI A;  2YFA A;  4NV2 A;  3I9V 1;  3LJ0 A;  2A2D A;  4NV5 A;  4YZD A;  3UIT A;  2ETD A;  5LNK 1;  2JAE A;  3B55 A;  4Z7H A;  2HGK A;  4PL3 A;  4G76 A;  2MJF B;  3L0I A;  2QGM A;  2F66 B;  2RAD A;  1TDP A;  4Z7G A;  1W3S A;  3F4M A;  2V6E A;  2QZG A;  2CAZ B;  2RLD A;  2P22 B;  2K19 A;  2YFB A;  2IP6 A;  2KKM A;  3IAS 1;  4O1P A;  4U6R A;  1SJ8 A;  3KP9 A;  1JQO A;  2GSC A;  2FEF A;  4I1T A;  3DA4 A;  2FUG 1;  3LJ2 A;  2XMX A;  2BL7 A;  4HFV A;  4PL4 A;  3SDJ A;  2ZRR A;  4HEA 1;  3Q8D A;  3FNB A;  4PL5 A;  2ZW3 A;  2E8G A;  2JB1 A;  2QSB A;  1YO7 A;  4AS2 A;  2A2C A; 
#chains in the Genus database with same CATH homology
 4OAU C;  4JCV E;  4GXT A;  2RIO A;  4G75 A;  2F6M B;  4Q9V A;  4AS3 A;  2JB3 A;  4O1O A;  4DWL A;  3P23 A;  3DO9 A;  2L1L B;  4YZ9 A;  3JSB A;  2XTR A;  3DA3 A;  2JB2 A;  1U5K A;  3LJ1 A;  4YZC A;  3FBV A;  2V1C C;  3AJF A;  3IAM 1;  2XTQ A;  3VA9 A;  4OAV B;  5HGI A;  2YFA A;  4NV2 A;  3I9V 1;  3LJ0 A;  2A2D A;  4NV5 A;  4YZD A;  3UIT A;  5LNK 1;  2JAE A;  4Z7H A;  4PL3 A;  4G76 A;  2MJF B;  3L0I A;  2F66 B;  4Z7G A;  1W3S A;  3F4M A;  2V6E A;  2CAZ B;  2P22 B;  2K19 A;  2YFB A;  2IP6 A;  2KKM A;  3IAS 1;  4O1P A;  4U6R A;  1SJ8 A;  3KP9 A;  4I1T A;  3DA4 A;  2FUG 1;  3LJ2 A;  2XMX A;  4HFV A;  4PL4 A;  3SDJ A;  2ZRR A;  4HEA 1;  3Q8D A;  4PL5 A;  2E8G A;  2JB1 A;  1YO7 A;  4AS2 A;  2A2C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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