2YFBA

X-ray structure of mcps ligand binding domain in complex with succinate
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
235
structure length
235
Chain Sequence
GSHMGDIGQLNKDLTDLRIARLQYMIANGDDTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRSDALYQIQLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Evidence for Chemoreceptors with Bimodular Ligand-Binding Regions Harboring Two Signal-Binding Sites.
pubmed doi rcsb
molecule tags Receptor
source organism Pseudomonas putida
molecule keywords METHYL-ACCEPTING CHEMOTAXIS TRANSDUCER
total genus 115
structure length 235
sequence length 235
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-04-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2yfbA01
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2yfbA02
3VA9A 2YFAA 2YFBA
chains in the Genus database with same CATH superfamily
2JB3A 3JSBA 1JQOA 2V6EA 3SDJA 2GSCA 2A2CA 2YFBA 2ZW3A 3UITA 4Z7HA 3P23A 4G75A 3DA3A 3FBVA 3LJ2A 3LJ1A 2K19A 4GXTA 1TDPA 4G76A 3FNBA 2BL7A 4Q9VA 2JB1A 2RIOA 4YZ9A 4OAVB 4AS3A 4OAUC 3DO9A 4NV5A 4YZDA 2JBWA 4HFVA 4PL3A 2QSBA 2ZRRA 3I9V1 4YZCA 2XMXA 3VA9A 2FU2A 2FUG1 3F4MA 4O1PA 2YFAA 3FVVA 3KP9A 2QZGA 4O1OA 2JAEA 3AJFA 4Z7GA 2JB2A 2IP6A 3IAM1 2KKMA 2HGKA 2CAZB 1W3SA 4I1TA 5LNK1 2RADA 1U5KA 4AS2A 4DWLA 4U6RA 1SJ8A 3DA4A 3LJ0A 3B55A 1YO7A 4JCVE 4PL4A 2BL8A 2P22B 2MJFB 2ETDA 2XTQA 4HEA1 4NV2A 2E8GA 2RLDA 4PL5A 2L1LB 3IAS1 3L0IA 2V1CC 2F6MB 5HGIA 2XTRA 2F66B 2FEFA 2A2DA 2QGMA 3Q8DA
chains in the Genus database with same CATH topology
2JB3A 3JSBA 2V6EA 3SDJA 2A2CA 2YFBA 3UITA 4Z7HA 3P23A 4G75A 3DA3A 3FBVA 3LJ2A 3LJ1A 2K19A 4GXTA 4G76A 4Q9VA 2JB1A 2RIOA 4YZ9A 4OAVB 4AS3A 4OAUC 3DO9A 4NV5A 4YZDA 4HFVA 4PL3A 2ZRRA 3I9V1 4YZCA 2XMXA 3VA9A 2FUG1 3F4MA 4O1PA 2YFAA 3KP9A 4O1OA 2JAEA 3AJFA 4Z7GA 2JB2A 2IP6A 3IAM1 2KKMA 1W3SA 2CAZB 4I1TA 5LNK1 1U5KA 4AS2A 4DWLA 4U6RA 1SJ8A 3DA4A 3LJ0A 1YO7A 4JCVE 4PL4A 2P22B 2MJFB 4HEA1 2XTQA 4NV2A 2E8GA 4PL5A 2L1LB 3IAS1 3L0IA 2V1CC 2F6MB 5HGIA 2XTRA 2F66B 2A2DA 3Q8DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VA9 A;  2YFA A;  2YFB A; 
#chains in the Genus database with same CATH topology
 2JB3 A;  3JSB A;  1JQO A;  2V6E A;  3SDJ A;  2GSC A;  2A2C A;  2YFB A;  2ZW3 A;  3UIT A;  4Z7H A;  3P23 A;  4G75 A;  3DA3 A;  3FBV A;  3LJ2 A;  3LJ1 A;  2K19 A;  4GXT A;  1TDP A;  4G76 A;  3FNB A;  2BL7 A;  4Q9V A;  2JB1 A;  2RIO A;  4YZ9 A;  4OAV B;  4AS3 A;  4OAU C;  3DO9 A;  4NV5 A;  4YZD A;  2JBW A;  4HFV A;  4PL3 A;  2QSB A;  2ZRR A;  3I9V 1;  4YZC A;  2XMX A;  3VA9 A;  2FU2 A;  2FUG 1;  3F4M A;  4O1P A;  2YFA A;  3FVV A;  3KP9 A;  2QZG A;  4O1O A;  2JAE A;  3AJF A;  4Z7G A;  2JB2 A;  2IP6 A;  3IAM 1;  2KKM A;  2HGK A;  2CAZ B;  1W3S A;  4I1T A;  5LNK 1;  2RAD A;  1U5K A;  4AS2 A;  4DWL A;  4U6R A;  1SJ8 A;  3DA4 A;  3LJ0 A;  3B55 A;  1YO7 A;  4JCV E;  4PL4 A;  2BL8 A;  2P22 B;  2MJF B;  2ETD A;  2XTQ A;  4HEA 1;  4NV2 A;  2E8G A;  2RLD A;  4PL5 A;  2L1L B;  3IAS 1;  3L0I A;  2V1C C;  2F6M B;  5HGI A;  2XTR A;  2F66 B;  2FEF A;  2A2D A;  2QGM A;  3Q8D A; 
#chains in the Genus database with same CATH homology
 2JB3 A;  3JSB A;  2V6E A;  3SDJ A;  2A2C A;  2YFB A;  3UIT A;  4Z7H A;  3P23 A;  4G75 A;  3DA3 A;  3FBV A;  3LJ2 A;  3LJ1 A;  2K19 A;  4GXT A;  4G76 A;  4Q9V A;  2JB1 A;  2RIO A;  4YZ9 A;  4OAV B;  4AS3 A;  4OAU C;  3DO9 A;  4NV5 A;  4YZD A;  4HFV A;  4PL3 A;  2ZRR A;  3I9V 1;  4YZC A;  2XMX A;  3VA9 A;  2FUG 1;  3F4M A;  4O1P A;  2YFA A;  3KP9 A;  4O1O A;  2JAE A;  3AJF A;  4Z7G A;  2JB2 A;  2IP6 A;  3IAM 1;  2KKM A;  1W3S A;  2CAZ B;  4I1T A;  5LNK 1;  1U5K A;  4AS2 A;  4DWL A;  4U6R A;  1SJ8 A;  3DA4 A;  3LJ0 A;  1YO7 A;  4JCV E;  4PL4 A;  2P22 B;  2MJF B;  4HEA 1;  2XTQ A;  4NV2 A;  2E8G A;  4PL5 A;  2L1L B;  3IAS 1;  3L0I A;  2V1C C;  2F6M B;  5HGI A;  2XTR A;  2F66 B;  2A2D A;  3Q8D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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