2YFBA

X-ray structure of mcps ligand binding domain in complex with succinate
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
235
structure length
235
Chain Sequence
GSHMGDIGQLNKDLTDLRIARLQYMIANGDDTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRSDALYQIQLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Evidence for Chemoreceptors with Bimodular Ligand-Binding Regions Harboring Two Signal-Binding Sites.
pubmed doi rcsb
molecule tags Receptor
source organism Pseudomonas putida
molecule keywords METHYL-ACCEPTING CHEMOTAXIS TRANSDUCER
total genus 115
structure length 235
sequence length 235
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-04-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2yfbA01
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2yfbA02
2YFAA 2YFBA 3VA9A
chains in the Genus database with same CATH superfamily
2KKMA 1W3SA 2A2CA 4HFVA 4G75A 2YFBA 3FVVA 3VA9A 2K19A 2P22B 4O1PA 5HGIA 2BL8A 2RLDA 4Z7GA 4I1TA 3UITA 2A2DA 4Q9VA 2L1LB 4PL4A 2RIOA 2MJFB 1YO7A 4HEA1 2XMXA 2XTRA 2F6MB 3IAM1 2CAZB 2GSCA 2IP6A 2ZW3A 3LJ1A 4YZ9A 2ZRRA 4Z7HA 1U5KA 2FEFA 3DA3A 2JB2A 2JBWA 3FBVA 3DA4A 2JB1A 4JCVE 3FNBA 2JAEA 2RADA 2QSBA 1TDPA 2XTQA 4AS2A 4PL5A 3DO9A 2FU2A 3SDJA 2V6EA 2BL7A 4GXTA 5LNK1 2HGKA 3LJ2A 2YFAA 2ETDA 3B55A 2QGMA 1SJ8A 4O1OA 4YZCA 4NV2A 2F66B 4U6RA 3P23A 4DWLA 4YZDA 3JSBA 4AS3A 4G76A 3Q8DA 3KP9A 1JQOA 4PL3A 3AJFA 4OAVB 3I9V1 3LJ0A 2QZGA 2E8GA 3IAS1 2FUG1 3F4MA 4NV5A 2JB3A 2V1CC 4OAUC 3L0IA
chains in the Genus database with same CATH topology
2KKMA 1W3SA 2A2CA 4HFVA 4G75A 2YFBA 3VA9A 2K19A 2P22B 4O1PA 5HGIA 4Z7GA 4I1TA 3UITA 2A2DA 4Q9VA 2L1LB 4PL4A 2RIOA 2MJFB 1YO7A 4HEA1 2XMXA 2XTRA 2F6MB 3IAM1 2CAZB 2IP6A 3LJ1A 4YZ9A 2ZRRA 4Z7HA 1U5KA 3DA3A 2JB2A 3FBVA 3DA4A 2JB1A 4JCVE 2JAEA 2XTQA 4AS2A 4PL5A 3DO9A 3SDJA 2V6EA 4GXTA 5LNK1 3LJ2A 2YFAA 1SJ8A 4O1OA 4YZCA 4NV2A 2F66B 4U6RA 3P23A 4DWLA 4YZDA 3JSBA 4AS3A 4G76A 3Q8DA 3KP9A 4PL3A 3AJFA 4OAVB 3I9V1 3LJ0A 2E8GA 3IAS1 2FUG1 3F4MA 4NV5A 2JB3A 2V1CC 4OAUC 3L0IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YFA A;  2YFB A;  3VA9 A; 
#chains in the Genus database with same CATH topology
 2KKM A;  1W3S A;  2A2C A;  4HFV A;  4G75 A;  2YFB A;  3FVV A;  3VA9 A;  2K19 A;  2P22 B;  4O1P A;  5HGI A;  2BL8 A;  2RLD A;  4Z7G A;  4I1T A;  3UIT A;  2A2D A;  4Q9V A;  2L1L B;  4PL4 A;  2RIO A;  2MJF B;  1YO7 A;  4HEA 1;  2XMX A;  2XTR A;  2F6M B;  3IAM 1;  2CAZ B;  2GSC A;  2IP6 A;  2ZW3 A;  3LJ1 A;  4YZ9 A;  2ZRR A;  4Z7H A;  1U5K A;  2FEF A;  3DA3 A;  2JB2 A;  2JBW A;  3FBV A;  3DA4 A;  2JB1 A;  4JCV E;  3FNB A;  2JAE A;  2RAD A;  2QSB A;  1TDP A;  2XTQ A;  4AS2 A;  4PL5 A;  3DO9 A;  2FU2 A;  3SDJ A;  2V6E A;  2BL7 A;  4GXT A;  5LNK 1;  2HGK A;  3LJ2 A;  2YFA A;  2ETD A;  3B55 A;  2QGM A;  1SJ8 A;  4O1O A;  4YZC A;  4NV2 A;  2F66 B;  4U6R A;  3P23 A;  4DWL A;  4YZD A;  3JSB A;  4AS3 A;  4G76 A;  3Q8D A;  3KP9 A;  1JQO A;  4PL3 A;  3AJF A;  4OAV B;  3I9V 1;  3LJ0 A;  2QZG A;  2E8G A;  3IAS 1;  2FUG 1;  3F4M A;  4NV5 A;  2JB3 A;  2V1C C;  4OAU C;  3L0I A; 
#chains in the Genus database with same CATH homology
 2KKM A;  1W3S A;  2A2C A;  4HFV A;  4G75 A;  2YFB A;  3VA9 A;  2K19 A;  2P22 B;  4O1P A;  5HGI A;  4Z7G A;  4I1T A;  3UIT A;  2A2D A;  4Q9V A;  2L1L B;  4PL4 A;  2RIO A;  2MJF B;  1YO7 A;  4HEA 1;  2XMX A;  2XTR A;  2F6M B;  3IAM 1;  2CAZ B;  2IP6 A;  3LJ1 A;  4YZ9 A;  2ZRR A;  4Z7H A;  1U5K A;  3DA3 A;  2JB2 A;  3FBV A;  3DA4 A;  2JB1 A;  4JCV E;  2JAE A;  2XTQ A;  4AS2 A;  4PL5 A;  3DO9 A;  3SDJ A;  2V6E A;  4GXT A;  5LNK 1;  3LJ2 A;  2YFA A;  1SJ8 A;  4O1O A;  4YZC A;  4NV2 A;  2F66 B;  4U6R A;  3P23 A;  4DWL A;  4YZD A;  3JSB A;  4AS3 A;  4G76 A;  3Q8D A;  3KP9 A;  4PL3 A;  3AJF A;  4OAV B;  3I9V 1;  3LJ0 A;  2E8G A;  3IAS 1;  2FUG 1;  3F4M A;  4NV5 A;  2JB3 A;  2V1C C;  4OAU C;  3L0I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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