2YH6A

Structure of the n-terminal domain of bamc from e. coli
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
111
structure length
108
Chain Sequence
GDTASLLVENNTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRGRYQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (79-84)EMPTYS2 (107-111)AH1 (92-103)Updating...
connected with : NaN
molecule tags Lipid binding protein
source organism Escherichia coli
publication title Structural Basis of Outer Membrane Protein Biogenesis in Bacteria.
pubmed doi rcsb
molecule keywords LIPOPROTEIN 34
total genus 28
structure length 108
sequence length 111
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-04-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.530.50 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 2yh6A00
2LAFA 3TGOC 2YH6A 5EKQC
chains in the Genus database with same CATH superfamily
1LN2A 2KEWA 2LE1A 4FPWA 4NCBA 4NCAA 3UQHA 3W9KA 2Q3QA 4LGBA 3H3RA 2M89A 4A8GA 5I9JA 1E09A 3NMVA 1X53A 3KB3A 1LN1A 3TVQA 4LGAA 3HJFA 2LGHA 4REJA 4A81A 2PSOA 4BKCA 3KAZA 3NJ0A 3WG8A 4A83A 5EKQC 2LPXA 2E3MA 5C9YA 4JHIA 2Z9ZA 3GKEA 1XN5A 4M9WA 4Y31A 4BTZA 3HM9A 3TVRA 1FSKA 1TXCA 2LAKA 3JRQB 2E3QA 3CNWA 3KLXA 3NJ1A 4BK7A 4C9IA 2LF2A 4Q0KA 2E3NA 3KDIA 2FFSA 2D4RA 3DLHA 2N4BA 2RERA 3OQUA 1T27A 3FO5A 4XRWA 4RYVA 2EJXA 4A88A 2VQ5A 3OTLA 4N76A 5E4BA 4BKDA 4QDDA 2K5GA 5AMWA 3ELIA 3GB4A 1XN6A 4A84A 3DLBA 3NS2A 3GTSA 1VJHA 2K7HA 2N4AA 3IJTA 4A8UA 3TGOC 3K90A 1FM4A 2QPVA 2LDKA 2RESA 2VNEA 3TFZA 1LLTA 4QDFA 3GGNA 3NMHA 3GTEA 4N3EA 1T17A 4N47A 3RT0C 4DSBA 2IL5A 3P0LA 5E4MA 4DSCA 4MNSA 3TL1A 2KF2A 3HVRA 3IE5A 3KB0A 4IGYA 3HO1A 2LAFA 4JHGA 3UJLA 3KL1A 4A86A 1IFVA 2KCZA 3F08A 4JDLA 4LA7A 3E85A 5E46A 4DS8A 2ZYLA 3NJOA 1QMRA 4JDAA 5E4DA 3RT2A 4REIA 1XDFA 4XRTA 2L8OA 4REHA 4QDCA 4WVOA 2E3OA 4B9RA 1BTVA 3P51A 3HXMA 2LEQA 2LUZA 3R6PA 4A85A 4IHRA 2I9YA 2QIMA 1B6FA 2FLHA 2E3RA 1ICXA 1Z94A 2GKDA 1ZXFA 2L9PA 2WQLA 1XUVA 4A80A 3KDHA 3KDJA 3NI8A 4OICA 2REZA 3GOBA 4A8VA 4E6FA 2E3PA 3NR4A 2LCGA 3RD6A 4Z3LA 1EM2A 4PSBA 1H2OA 1XFSA 3OH8A 2LIOA 3Q64A 4N41A 4C94A 5I8FA 3H3TA 3H3SA 4GY9A 3GL0A 3PUTA 3UIDA 4MA6A 2A1LA 3QN1A 1UW5A 3NEGA 3NQNA 3P9VA 2M47A 2E3SA 3F73A 3NMNA 4LG5A 4QCKA 4IGVA 1BV1A 4A87A 4C9CA 4QIPA 5BRLA 3NMPA 3Q63A 5JO1A 2KTEA 4MAPA 3W9RA 3NMTA 4BK6A 4KPYA 4IH0A 3PU2A 3HK2A 2R55A 4QDFB 2L65A 1TW0A 5JO2A 5JNNA 3C0VA 1LN3A 1KCMA 3H3QA 3JRSA 4IH2A 2PCSA 3K3KA 3KAYA 3NEFA 2NN5A 4JHHA 3GL2A 2NS9A 2Z9YA 3QSZA 4IGXA 4JHYA 3Q6AA 4N0GC 3ZVUA 3OJIA 2MOUA 4R7KA 4IGWA 1JSSA 2YH6A 2BK0A 4M9BA
chains in the Genus database with same CATH topology
1LN2A 2KEWA 2LE1A 4FPWA 4NCBA 4NCAA 3UQHA 3W9KA 2Q3QA 4LGBA 3H3RA 2M89A 4A8GA 5I9JA 1E09A 3NMVA 1X53A 3KB3A 1LN1A 3TVQA 4LGAA 3HJFA 2LGHA 4REJA 4A81A 2PSOA 4BKCA 3KAZA 3NJ0A 3WG8A 4A83A 5EKQC 2LPXA 2E3MA 5C9YA 4JHIA 2Z9ZA 3GKEA 1XN5A 4M9WA 4Y31A 4BTZA 3HM9A 3TVRA 1FSKA 1TXCA 2LAKA 3JRQB 2E3QA 3CNWA 3KLXA 3NJ1A 4BK7A 4C9IA 2LF2A 4Q0KA 2E3NA 3KDIA 2FFSA 2D4RA 3DLHA 2N4BA 2RERA 3OQUA 1T27A 3FO5A 4XRWA 4RYVA 2EJXA 4A88A 2VQ5A 3OTLA 4N76A 5E4BA 4BKDA 4QDDA 2K5GA 5AMWA 3ELIA 3GB4A 1XN6A 4A84A 3DLBA 3NS2A 3GTSA 1VJHA 2K7HA 2N4AA 3IJTA 4A8UA 3TGOC 3K90A 1FM4A 2QPVA 2LDKA 2RESA 2VNEA 3TFZA 1LLTA 4QDFA 3GGNA 3NMHA 3GTEA 4N3EA 1T17A 4N47A 3RT0C 4DSBA 2IL5A 3P0LA 5E4MA 4DSCA 4MNSA 3TL1A 2KF2A 3HVRA 3IE5A 3KB0A 4IGYA 3HO1A 2LAFA 4JHGA 3UJLA 3KL1A 4A86A 1IFVA 2KCZA 3F08A 4JDLA 4LA7A 3E85A 5E46A 4DS8A 2ZYLA 3NJOA 1QMRA 4JDAA 5E4DA 3RT2A 4REIA 1XDFA 4XRTA 2L8OA 4REHA 4QDCA 4WVOA 2E3OA 4B9RA 1BTVA 3P51A 3HXMA 2LEQA 2LUZA 3R6PA 4A85A 4IHRA 2I9YA 2QIMA 1B6FA 2FLHA 2E3RA 1ICXA 1Z94A 2GKDA 1ZXFA 2L9PA 2WQLA 1XUVA 4A80A 3KDHA 3KDJA 3NI8A 4OICA 2REZA 3GOBA 4A8VA 4E6FA 2E3PA 3NR4A 2LCGA 3RD6A 4Z3LA 1EM2A 4PSBA 1H2OA 1XFSA 3OH8A 2LIOA 3Q64A 4N41A 4C94A 5I8FA 3H3TA 3H3SA 4GY9A 3GL0A 3PUTA 3UIDA 4MA6A 2A1LA 3QN1A 1UW5A 3NEGA 3NQNA 3P9VA 2M47A 2E3SA 3F73A 3NMNA 4LG5A 4QCKA 4IGVA 1BV1A 4A87A 4C9CA 4QIPA 5BRLA 3NMPA 3Q63A 5JO1A 2KTEA 4MAPA 3W9RA 3NMTA 4BK6A 4KPYA 4IH0A 3PU2A 3HK2A 2R55A 4QDFB 2L65A 1TW0A 5JO2A 5JNNA 3C0VA 1LN3A 1KCMA 3H3QA 3JRSA 4IH2A 2PCSA 3K3KA 3KAYA 3NEFA 2NN5A 4JHHA 3GL2A 2NS9A 2Z9YA 3QSZA 4IGXA 4JHYA 3Q6AA 4N0GC 3ZVUA 3OJIA 2MOUA 4R7KA 4IGWA 1JSSA 2YH6A 2BK0A 4M9BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LAF A;  3TGO C;  2YH6 A;  5EKQ C; 
#chains in the Genus database with same CATH topology
 1LN2 A;  2KEW A;  2LE1 A;  4FPW A;  4NCB A;  4NCA A;  3UQH A;  3W9K A;  2Q3Q A;  4LGB A;  3H3R A;  2M89 A;  4A8G A;  5I9J A;  1E09 A;  3NMV A;  1X53 A;  3KB3 A;  1LN1 A;  3TVQ A;  4LGA A;  3HJF A;  2LGH A;  4REJ A;  4A81 A;  2PSO A;  4BKC A;  3KAZ A;  3NJ0 A;  3WG8 A;  4A83 A;  5EKQ C;  2LPX A;  2E3M A;  5C9Y A;  4JHI A;  2Z9Z A;  3GKE A;  1XN5 A;  4M9W A;  4Y31 A;  4BTZ A;  3HM9 A;  3TVR A;  1FSK A;  1TXC A;  2LAK A;  3JRQ B;  2E3Q A;  3CNW A;  3KLX A;  3NJ1 A;  4BK7 A;  4C9I A;  2LF2 A;  4Q0K A;  2E3N A;  3KDI A;  2FFS A;  2D4R A;  3DLH A;  2N4B A;  2RER A;  3OQU A;  1T27 A;  3FO5 A;  4XRW A;  4RYV A;  2EJX A;  4A88 A;  2VQ5 A;  3OTL A;  4N76 A;  5E4B A;  4BKD A;  4QDD A;  2K5G A;  5AMW A;  3ELI A;  3GB4 A;  1XN6 A;  4A84 A;  3DLB A;  3NS2 A;  3GTS A;  1VJH A;  2K7H A;  2N4A A;  3IJT A;  4A8U A;  3TGO C;  3K90 A;  1FM4 A;  2QPV A;  2LDK A;  2RES A;  2VNE A;  3TFZ A;  1LLT A;  4QDF A;  3GGN A;  3NMH A;  3GTE A;  4N3E A;  1T17 A;  4N47 A;  3RT0 C;  4DSB A;  2IL5 A;  3P0L A;  5E4M A;  4DSC A;  4MNS A;  3TL1 A;  2KF2 A;  3HVR A;  3IE5 A;  3KB0 A;  4IGY A;  3HO1 A;  2LAF A;  4JHG A;  3UJL A;  3KL1 A;  4A86 A;  1IFV A;  2KCZ A;  3F08 A;  4JDL A;  4LA7 A;  3E85 A;  5E46 A;  4DS8 A;  2ZYL A;  3NJO A;  1QMR A;  4JDA A;  5E4D A;  3RT2 A;  4REI A;  1XDF A;  4XRT A;  2L8O A;  4REH A;  4QDC A;  4WVO A;  2E3O A;  4B9R A;  1BTV A;  3P51 A;  3HXM A;  2LEQ A;  2LUZ A;  3R6P A;  4A85 A;  4IHR A;  2I9Y A;  2QIM A;  1B6F A;  2FLH A;  2E3R A;  1ICX A;  1Z94 A;  2GKD A;  1ZXF A;  2L9P A;  2WQL A;  1XUV A;  4A80 A;  3KDH A;  3KDJ A;  3NI8 A;  4OIC A;  2REZ A;  3GOB A;  4A8V A;  4E6F A;  2E3P A;  3NR4 A;  2LCG A;  3RD6 A;  4Z3L A;  1EM2 A;  4PSB A;  1H2O A;  1XFS A;  3OH8 A;  2LIO A;  3Q64 A;  4N41 A;  4C94 A;  5I8F A;  3H3T A;  3H3S A;  4GY9 A;  3GL0 A;  3PUT A;  3UID A;  4MA6 A;  2A1L A;  3QN1 A;  1UW5 A;  3NEG A;  3NQN A;  3P9V A;  2M47 A;  2E3S A;  3F73 A;  3NMN A;  4LG5 A;  4QCK A;  4IGV A;  1BV1 A;  4A87 A;  4C9C A;  4QIP A;  5BRL A;  3NMP A;  3Q63 A;  5JO1 A;  2KTE A;  4MAP A;  3W9R A;  3NMT A;  4BK6 A;  4KPY A;  4IH0 A;  3PU2 A;  3HK2 A;  2R55 A;  4QDF B;  2L65 A;  1TW0 A;  5JO2 A;  5JNN A;  3C0V A;  1LN3 A;  1KCM A;  3H3Q A;  3JRS A;  4IH2 A;  2PCS A;  3K3K A;  3KAY A;  3NEF A;  2NN5 A;  4JHH A;  3GL2 A;  2NS9 A;  2Z9Y A;  3QSZ A;  4IGX A;  4JHY A;  3Q6A A;  4N0G C;  3ZVU A;  3OJI A;  2MOU A;  4R7K A;  4IGW A;  1JSS A;  2YH6 A;  2BK0 A;  4M9B A; 
#chains in the Genus database with same CATH homology
 1LN2 A;  2KEW A;  2LE1 A;  4FPW A;  4NCB A;  4NCA A;  3UQH A;  3W9K A;  2Q3Q A;  4LGB A;  3H3R A;  2M89 A;  4A8G A;  5I9J A;  1E09 A;  3NMV A;  1X53 A;  3KB3 A;  1LN1 A;  3TVQ A;  4LGA A;  3HJF A;  2LGH A;  4REJ A;  4A81 A;  2PSO A;  4BKC A;  3KAZ A;  3NJ0 A;  3WG8 A;  4A83 A;  5EKQ C;  2LPX A;  2E3M A;  5C9Y A;  4JHI A;  2Z9Z A;  3GKE A;  1XN5 A;  4M9W A;  4Y31 A;  4BTZ A;  3HM9 A;  3TVR A;  1FSK A;  1TXC A;  2LAK A;  3JRQ B;  2E3Q A;  3CNW A;  3KLX A;  3NJ1 A;  4BK7 A;  4C9I A;  2LF2 A;  4Q0K A;  2E3N A;  3KDI A;  2FFS A;  2D4R A;  3DLH A;  2N4B A;  2RER A;  3OQU A;  1T27 A;  3FO5 A;  4XRW A;  4RYV A;  2EJX A;  4A88 A;  2VQ5 A;  3OTL A;  4N76 A;  5E4B A;  4BKD A;  4QDD A;  2K5G A;  5AMW A;  3ELI A;  3GB4 A;  1XN6 A;  4A84 A;  3DLB A;  3NS2 A;  3GTS A;  1VJH A;  2K7H A;  2N4A A;  3IJT A;  4A8U A;  3TGO C;  3K90 A;  1FM4 A;  2QPV A;  2LDK A;  2RES A;  2VNE A;  3TFZ A;  1LLT A;  4QDF A;  3GGN A;  3NMH A;  3GTE A;  4N3E A;  1T17 A;  4N47 A;  3RT0 C;  4DSB A;  2IL5 A;  3P0L A;  5E4M A;  4DSC A;  4MNS A;  3TL1 A;  2KF2 A;  3HVR A;  3IE5 A;  3KB0 A;  4IGY A;  3HO1 A;  2LAF A;  4JHG A;  3UJL A;  3KL1 A;  4A86 A;  1IFV A;  2KCZ A;  3F08 A;  4JDL A;  4LA7 A;  3E85 A;  5E46 A;  4DS8 A;  2ZYL A;  3NJO A;  1QMR A;  4JDA A;  5E4D A;  3RT2 A;  4REI A;  1XDF A;  4XRT A;  2L8O A;  4REH A;  4QDC A;  4WVO A;  2E3O A;  4B9R A;  1BTV A;  3P51 A;  3HXM A;  2LEQ A;  2LUZ A;  3R6P A;  4A85 A;  4IHR A;  2I9Y A;  2QIM A;  1B6F A;  2FLH A;  2E3R A;  1ICX A;  1Z94 A;  2GKD A;  1ZXF A;  2L9P A;  2WQL A;  1XUV A;  4A80 A;  3KDH A;  3KDJ A;  3NI8 A;  4OIC A;  2REZ A;  3GOB A;  4A8V A;  4E6F A;  2E3P A;  3NR4 A;  2LCG A;  3RD6 A;  4Z3L A;  1EM2 A;  4PSB A;  1H2O A;  1XFS A;  3OH8 A;  2LIO A;  3Q64 A;  4N41 A;  4C94 A;  5I8F A;  3H3T A;  3H3S A;  4GY9 A;  3GL0 A;  3PUT A;  3UID A;  4MA6 A;  2A1L A;  3QN1 A;  1UW5 A;  3NEG A;  3NQN A;  3P9V A;  2M47 A;  2E3S A;  3F73 A;  3NMN A;  4LG5 A;  4QCK A;  4IGV A;  1BV1 A;  4A87 A;  4C9C A;  4QIP A;  5BRL A;  3NMP A;  3Q63 A;  5JO1 A;  2KTE A;  4MAP A;  3W9R A;  3NMT A;  4BK6 A;  4KPY A;  4IH0 A;  3PU2 A;  3HK2 A;  2R55 A;  4QDF B;  2L65 A;  1TW0 A;  5JO2 A;  5JNN A;  3C0V A;  1LN3 A;  1KCM A;  3H3Q A;  3JRS A;  4IH2 A;  2PCS A;  3K3K A;  3KAY A;  3NEF A;  2NN5 A;  4JHH A;  3GL2 A;  2NS9 A;  2Z9Y A;  3QSZ A;  4IGX A;  4JHY A;  3Q6A A;  4N0G C;  3ZVU A;  3OJI A;  2MOU A;  4R7K A;  4IGW A;  1JSS A;  2YH6 A;  2BK0 A;  4M9B A; 
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