3NQNA

Crystal structure of a protein with unknown function. (dr_2006) from deinococcus radiodurans at 1.88 a resolution
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
155
structure length
151
Chain Sequence
LSAEQSFTLRHPHGQAAALAFVREPAAALAGVRFLRGLDSDGEQVWGELLVTVPLLGEVDLPFRSEIVRTPQGAELRPLTLTGERAWVAVSGQATAAEGGEMAFAFQFQAHLAEGWGGAAFEKMVQAAAGRTLERVAKALPEGLAAGLPPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a Protein with unknown function. (DR_2006) from DEINOCOCCUS RADIODURANS at 1.88 A resolution
rcsb
molecule tags Structural genomics, unknown function
source organism Deinococcus radiodurans
molecule keywords uncharacterized protein
total genus 36
structure length 151
sequence length 155
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12723 DUF3809 Protein of unknown function (DUF3809)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.530.70 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 3nqnA00
3NQNA
chains in the Genus database with same CATH superfamily
2VQ5A 1TXCA 3NMTA 4LGBA 3IJTA 2IL5A 3GL0A 2WQLA 2E3OA 1FSKA 1X53A 2K5GA 2A1LA 4A80A 2BK0A 4Z3LA 3Q6AA 4REHA 2KF2A 4IH2A 4QDFB 3K3KA 4N0GC 3KDIA 3HO1A 5C9YA 3JRSA 2KTEA 4M9BA 3TL1A 1FM4A 1QMRA 2Z9ZA 3NMHA 3PU2A 4XRWA 2KEWA 3R6PA 2L9PA 4KPYA 5AMWA 1IFVA 1EM2A 2Z9YA 3OJIA 2M89A 4A88A 3UJLA 4A81A 5E4BA 2EJXA 2LE1A 3P0LA 4QIPA 3W9RA 3QN1A 3NJ1A 3WG8A 4REIA 4REJA 4C9IA 4N3EA 2LAFA 2LGHA 1UW5A 3OTLA 2FFSA 3QSZA 4LA7A 3NEGA 1JSSA 2N4BA 4A8GA 5JNNA 5JO2A 3KAYA 3UQHA 2NS9A 3H3SA 3NMVA 2QPVA 5BRLA 4E6FA 4DSCA 3GTEA 2RERA 5I8FA 1VJHA 4N47A 3NJOA 3H3TA 3HJFA 2N4AA 4Q0KA 1LN2A 3RT2A 3HM9A 3JRQB 3FO5A 3NR4A 5I9JA 4JDLA 4JHHA 2FLHA 2PSOA 3KAZA 4C9CA 2LCGA 3OH8A 3HK2A 4MAPA 1LN3A 4JHIA 3NMPA 2VNEA 2E3PA 2E3RA 2LIOA 4N76A 4IGWA 3E85A 4R7KA 2RESA 3K90A 3NJ0A 3OQUA 4GY9A 2NN5A 2LPXA 4NCBA 3F73A 1XFSA 4BTZA 3KB3A 3DLBA 3GB4A 2LEQA 2KCZA 4BK6A 5E46A 1TW0A 3KDJA 1T27A 4M9WA 1XN5A 1B6FA 1BV1A 2Q3QA 2I9YA 3TVRA 2QIMA 5EKQC 3HVRA 2LDKA 1H2OA 3F08A 3H3QA 4IHRA 3P51A 4A84A 4MA6A 3GL2A 3ZVUA 3PUTA 4QDDA 4A87A 4BK7A 3HXMA 3TFZA 2E3QA 4MNSA 2E3SA 4BKCA 1LLTA 3TGOC 4A8UA 3DLHA 2REZA 3H3RA 4IGXA 2ZYLA 1Z94A 3NQNA 2L8OA 3NEFA 3NI8A 1T17A 5E4MA 2GKDA 4WVOA 4JDAA 4OICA 4XRTA 2LUZA 4DSBA 2R55A 4QDFA 1XDFA 3IE5A 3GKEA 3NS2A 4RYVA 2MOUA 4Y31A 2K7HA 2E3MA 4BKDA 2D4RA 4C94A 3GOBA 2LAKA 4NCAA 1E09A 4JHGA 3Q63A 1ICXA 3C0VA 3ELIA 4IGVA 5E4DA 1LN1A 4IGYA 4JHYA 4LGAA 1XN6A 3GGNA 3RT0C 3TVQA 4B9RA 1KCMA 4LG5A 4A85A 1BTVA 4A8VA 2YH6A 3KDHA 3Q64A 3UIDA 4FPWA 4DS8A 5JO1A 3KB0A 4IH0A 3GTSA 2PCSA 3KL1A 1ZXFA 4A86A 1XUVA 3P9VA 4A83A 2LF2A 3NMNA 2L65A 3W9KA 4QDCA 3KLXA 3CNWA 4PSBA 2M47A 4N41A 4QCKA 2E3NA 3RD6A
chains in the Genus database with same CATH topology
2VQ5A 1TXCA 3NMTA 4LGBA 3IJTA 2IL5A 3GL0A 2WQLA 2E3OA 1FSKA 1X53A 2K5GA 2A1LA 4A80A 2BK0A 4Z3LA 3Q6AA 4REHA 2KF2A 4IH2A 4QDFB 3K3KA 4N0GC 3KDIA 3HO1A 5C9YA 3JRSA 2KTEA 4M9BA 3TL1A 1FM4A 1QMRA 2Z9ZA 3NMHA 3PU2A 4XRWA 2KEWA 3R6PA 2L9PA 4KPYA 5AMWA 1IFVA 1EM2A 2Z9YA 3OJIA 2M89A 4A88A 3UJLA 4A81A 5E4BA 2EJXA 2LE1A 3P0LA 4QIPA 3W9RA 3QN1A 3NJ1A 3WG8A 4REIA 4REJA 4C9IA 4N3EA 2LAFA 2LGHA 1UW5A 3OTLA 2FFSA 3QSZA 4LA7A 3NEGA 1JSSA 2N4BA 4A8GA 5JNNA 5JO2A 3KAYA 3UQHA 2NS9A 3H3SA 3NMVA 2QPVA 5BRLA 4E6FA 4DSCA 3GTEA 2RERA 5I8FA 1VJHA 4N47A 3NJOA 3H3TA 3HJFA 2N4AA 4Q0KA 1LN2A 3RT2A 3HM9A 3JRQB 3FO5A 3NR4A 5I9JA 4JDLA 4JHHA 2FLHA 2PSOA 3KAZA 4C9CA 2LCGA 3OH8A 3HK2A 4MAPA 1LN3A 4JHIA 3NMPA 2VNEA 2E3PA 2E3RA 2LIOA 4N76A 4IGWA 3E85A 4R7KA 2RESA 3K90A 3NJ0A 3OQUA 4GY9A 2NN5A 2LPXA 4NCBA 3F73A 1XFSA 4BTZA 3KB3A 3DLBA 3GB4A 2LEQA 2KCZA 4BK6A 5E46A 1TW0A 3KDJA 1T27A 4M9WA 1XN5A 1B6FA 1BV1A 2Q3QA 2I9YA 3TVRA 2QIMA 5EKQC 3HVRA 2LDKA 1H2OA 3F08A 3H3QA 4IHRA 3P51A 4A84A 4MA6A 3GL2A 3ZVUA 3PUTA 4QDDA 4A87A 4BK7A 3HXMA 3TFZA 2E3QA 4MNSA 2E3SA 4BKCA 1LLTA 3TGOC 4A8UA 3DLHA 2REZA 3H3RA 4IGXA 2ZYLA 1Z94A 3NQNA 2L8OA 3NEFA 3NI8A 1T17A 5E4MA 2GKDA 4WVOA 4JDAA 4OICA 4XRTA 2LUZA 4DSBA 2R55A 4QDFA 1XDFA 3IE5A 3GKEA 3NS2A 4RYVA 2MOUA 4Y31A 2K7HA 2E3MA 4BKDA 2D4RA 4C94A 3GOBA 2LAKA 4NCAA 1E09A 4JHGA 3Q63A 1ICXA 3C0VA 3ELIA 4IGVA 5E4DA 1LN1A 4IGYA 4JHYA 4LGAA 1XN6A 3GGNA 3RT0C 3TVQA 4B9RA 1KCMA 4LG5A 4A85A 1BTVA 4A8VA 2YH6A 3KDHA 3Q64A 3UIDA 4FPWA 4DS8A 5JO1A 3KB0A 4IH0A 3GTSA 2PCSA 3KL1A 1ZXFA 4A86A 1XUVA 3P9VA 4A83A 2LF2A 3NMNA 2L65A 3W9KA 4QDCA 3KLXA 3CNWA 4PSBA 2M47A 4N41A 4QCKA 2E3NA 3RD6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NQN A; 
#chains in the Genus database with same CATH topology
 2VQ5 A;  1TXC A;  3NMT A;  4LGB A;  3IJT A;  2IL5 A;  3GL0 A;  2WQL A;  2E3O A;  1FSK A;  1X53 A;  2K5G A;  2A1L A;  4A80 A;  2BK0 A;  4Z3L A;  3Q6A A;  4REH A;  2KF2 A;  4IH2 A;  4QDF B;  3K3K A;  4N0G C;  3KDI A;  3HO1 A;  5C9Y A;  3JRS A;  2KTE A;  4M9B A;  3TL1 A;  1FM4 A;  1QMR A;  2Z9Z A;  3NMH A;  3PU2 A;  4XRW A;  2KEW A;  3R6P A;  2L9P A;  4KPY A;  5AMW A;  1IFV A;  1EM2 A;  2Z9Y A;  3OJI A;  2M89 A;  4A88 A;  3UJL A;  4A81 A;  5E4B A;  2EJX A;  2LE1 A;  3P0L A;  4QIP A;  3W9R A;  3QN1 A;  3NJ1 A;  3WG8 A;  4REI A;  4REJ A;  4C9I A;  4N3E A;  2LAF A;  2LGH A;  1UW5 A;  3OTL A;  2FFS A;  3QSZ A;  4LA7 A;  3NEG A;  1JSS A;  2N4B A;  4A8G A;  5JNN A;  5JO2 A;  3KAY A;  3UQH A;  2NS9 A;  3H3S A;  3NMV A;  2QPV A;  5BRL A;  4E6F A;  4DSC A;  3GTE A;  2RER A;  5I8F A;  1VJH A;  4N47 A;  3NJO A;  3H3T A;  3HJF A;  2N4A A;  4Q0K A;  1LN2 A;  3RT2 A;  3HM9 A;  3JRQ B;  3FO5 A;  3NR4 A;  5I9J A;  4JDL A;  4JHH A;  2FLH A;  2PSO A;  3KAZ A;  4C9C A;  2LCG A;  3OH8 A;  3HK2 A;  4MAP A;  1LN3 A;  4JHI A;  3NMP A;  2VNE A;  2E3P A;  2E3R A;  2LIO A;  4N76 A;  4IGW A;  3E85 A;  4R7K A;  2RES A;  3K90 A;  3NJ0 A;  3OQU A;  4GY9 A;  2NN5 A;  2LPX A;  4NCB A;  3F73 A;  1XFS A;  4BTZ A;  3KB3 A;  3DLB A;  3GB4 A;  2LEQ A;  2KCZ A;  4BK6 A;  5E46 A;  1TW0 A;  3KDJ A;  1T27 A;  4M9W A;  1XN5 A;  1B6F A;  1BV1 A;  2Q3Q A;  2I9Y A;  3TVR A;  2QIM A;  5EKQ C;  3HVR A;  2LDK A;  1H2O A;  3F08 A;  3H3Q A;  4IHR A;  3P51 A;  4A84 A;  4MA6 A;  3GL2 A;  3ZVU A;  3PUT A;  4QDD A;  4A87 A;  4BK7 A;  3HXM A;  3TFZ A;  2E3Q A;  4MNS A;  2E3S A;  4BKC A;  1LLT A;  3TGO C;  4A8U A;  3DLH A;  2REZ A;  3H3R A;  4IGX A;  2ZYL A;  1Z94 A;  3NQN A;  2L8O A;  3NEF A;  3NI8 A;  1T17 A;  5E4M A;  2GKD A;  4WVO A;  4JDA A;  4OIC A;  4XRT A;  2LUZ A;  4DSB A;  2R55 A;  4QDF A;  1XDF A;  3IE5 A;  3GKE A;  3NS2 A;  4RYV A;  2MOU A;  4Y31 A;  2K7H A;  2E3M A;  4BKD A;  2D4R A;  4C94 A;  3GOB A;  2LAK A;  4NCA A;  1E09 A;  4JHG A;  3Q63 A;  1ICX A;  3C0V A;  3ELI A;  4IGV A;  5E4D A;  1LN1 A;  4IGY A;  4JHY A;  4LGA A;  1XN6 A;  3GGN A;  3RT0 C;  3TVQ A;  4B9R A;  1KCM A;  4LG5 A;  4A85 A;  1BTV A;  4A8V A;  2YH6 A;  3KDH A;  3Q64 A;  3UID A;  4FPW A;  4DS8 A;  5JO1 A;  3KB0 A;  4IH0 A;  3GTS A;  2PCS A;  3KL1 A;  1ZXF A;  4A86 A;  1XUV A;  3P9V A;  4A83 A;  2LF2 A;  3NMN A;  2L65 A;  3W9K A;  4QDC A;  3KLX A;  3CNW A;  4PSB A;  2M47 A;  4N41 A;  4QCK A;  2E3N A;  3RD6 A; 
#chains in the Genus database with same CATH homology
 2VQ5 A;  1TXC A;  3NMT A;  4LGB A;  3IJT A;  2IL5 A;  3GL0 A;  2WQL A;  2E3O A;  1FSK A;  1X53 A;  2K5G A;  2A1L A;  4A80 A;  2BK0 A;  4Z3L A;  3Q6A A;  4REH A;  2KF2 A;  4IH2 A;  4QDF B;  3K3K A;  4N0G C;  3KDI A;  3HO1 A;  5C9Y A;  3JRS A;  2KTE A;  4M9B A;  3TL1 A;  1FM4 A;  1QMR A;  2Z9Z A;  3NMH A;  3PU2 A;  4XRW A;  2KEW A;  3R6P A;  2L9P A;  4KPY A;  5AMW A;  1IFV A;  1EM2 A;  2Z9Y A;  3OJI A;  2M89 A;  4A88 A;  3UJL A;  4A81 A;  5E4B A;  2EJX A;  2LE1 A;  3P0L A;  4QIP A;  3W9R A;  3QN1 A;  3NJ1 A;  3WG8 A;  4REI A;  4REJ A;  4C9I A;  4N3E A;  2LAF A;  2LGH A;  1UW5 A;  3OTL A;  2FFS A;  3QSZ A;  4LA7 A;  3NEG A;  1JSS A;  2N4B A;  4A8G A;  5JNN A;  5JO2 A;  3KAY A;  3UQH A;  2NS9 A;  3H3S A;  3NMV A;  2QPV A;  5BRL A;  4E6F A;  4DSC A;  3GTE A;  2RER A;  5I8F A;  1VJH A;  4N47 A;  3NJO A;  3H3T A;  3HJF A;  2N4A A;  4Q0K A;  1LN2 A;  3RT2 A;  3HM9 A;  3JRQ B;  3FO5 A;  3NR4 A;  5I9J A;  4JDL A;  4JHH A;  2FLH A;  2PSO A;  3KAZ A;  4C9C A;  2LCG A;  3OH8 A;  3HK2 A;  4MAP A;  1LN3 A;  4JHI A;  3NMP A;  2VNE A;  2E3P A;  2E3R A;  2LIO A;  4N76 A;  4IGW A;  3E85 A;  4R7K A;  2RES A;  3K90 A;  3NJ0 A;  3OQU A;  4GY9 A;  2NN5 A;  2LPX A;  4NCB A;  3F73 A;  1XFS A;  4BTZ A;  3KB3 A;  3DLB A;  3GB4 A;  2LEQ A;  2KCZ A;  4BK6 A;  5E46 A;  1TW0 A;  3KDJ A;  1T27 A;  4M9W A;  1XN5 A;  1B6F A;  1BV1 A;  2Q3Q A;  2I9Y A;  3TVR A;  2QIM A;  5EKQ C;  3HVR A;  2LDK A;  1H2O A;  3F08 A;  3H3Q A;  4IHR A;  3P51 A;  4A84 A;  4MA6 A;  3GL2 A;  3ZVU A;  3PUT A;  4QDD A;  4A87 A;  4BK7 A;  3HXM A;  3TFZ A;  2E3Q A;  4MNS A;  2E3S A;  4BKC A;  1LLT A;  3TGO C;  4A8U A;  3DLH A;  2REZ A;  3H3R A;  4IGX A;  2ZYL A;  1Z94 A;  3NQN A;  2L8O A;  3NEF A;  3NI8 A;  1T17 A;  5E4M A;  2GKD A;  4WVO A;  4JDA A;  4OIC A;  4XRT A;  2LUZ A;  4DSB A;  2R55 A;  4QDF A;  1XDF A;  3IE5 A;  3GKE A;  3NS2 A;  4RYV A;  2MOU A;  4Y31 A;  2K7H A;  2E3M A;  4BKD A;  2D4R A;  4C94 A;  3GOB A;  2LAK A;  4NCA A;  1E09 A;  4JHG A;  3Q63 A;  1ICX A;  3C0V A;  3ELI A;  4IGV A;  5E4D A;  1LN1 A;  4IGY A;  4JHY A;  4LGA A;  1XN6 A;  3GGN A;  3RT0 C;  3TVQ A;  4B9R A;  1KCM A;  4LG5 A;  4A85 A;  1BTV A;  4A8V A;  2YH6 A;  3KDH A;  3Q64 A;  3UID A;  4FPW A;  4DS8 A;  5JO1 A;  3KB0 A;  4IH0 A;  3GTS A;  2PCS A;  3KL1 A;  1ZXF A;  4A86 A;  1XUV A;  3P9V A;  4A83 A;  2LF2 A;  3NMN A;  2L65 A;  3W9K A;  4QDC A;  3KLX A;  3CNW A;  4PSB A;  2M47 A;  4N41 A;  4QCK A;  2E3N A;  3RD6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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