2ZRRA

Crystal structure of an immunity protein that contributes to the self-protection of bacteriocin-producing enterococcus mundtii 15-1a
Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
83
structure length
83
Chain Sequence
GDDRRKKAEVIITELLDDLEIDLGNESLRKVLGSYLKKLKNEGTSVPLVLSRMNIEISNAIKKDGVSLNENQSKKLKELMSIS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH1 (13-28)TIV2 (71-74)EMPTYTIV1 (31-34)AH2 (34-50)AH3 (55-71)AH4 (79-90)Updating...
connected with : NaN
molecule tags Antimicrobial protein
source organism Enterococcus mundtii
publication title Crystal structure and mutagenic analysis of a bacteriocin immunity protein, Mun-im
pubmed doi rcsb
molecule keywords Mundticin KS immunity protein
total genus 31
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2008-08-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08951 EntA_Immun Enterocin A Immunity
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.140 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2zrrA00
2K19A 2IP6A 2ZRRA
chains in the Genus database with same CATH superfamily
3L0IA 2QGMA 4OAUC 2ETDA 4PL4A 2RADA 2RLDA 3JSBA 2BL7A 4YZDA 4HFVA 1W3SA 2QSBA 3UITA 2KKMA 2JB2A 3AJFA 3B55A 2FU2A 4AS2A 2YFAA 4DWLA 2RIOA 4Q9VA 4G75A 4O1PA 1U5KA 2YFBA 4I1TA 2MJFB 4Z7HA 3KP9A 4GXTA 2XMXA 3DA3A 4NV2A 1TDPA 1YO7A 4G76A 2CAZB 3Q8DA 2V6EA 5LNK1 4O1OA 2QZGA 3FBVA 4Z7GA 2A2CA 3LJ2A 2BL8A 3I9V1 4PL5A 4PL3A 2L1LB 1JQOA 3F4MA 2JB3A 2JAEA 2IP6A 2E8GA 3DO9A 1SJ8A 4OAVB 4AS3A 3LJ1A 4NV5A 2JB1A 5HGIA 3DA4A 2XTRA 2V1CC 4YZCA 2ZRRA 3FNBA 3IAS1 2HGKA 2XTQA 2F66B 2ZW3A 3FVVA 4YZ9A 4HEA1 2K19A 3P23A 2P22B 2FEFA 2GSCA 2JBWA 4JCVE 2FUG1 3IAM1 3VA9A 2A2DA 4U6RA 2F6MB 3SDJA 3LJ0A
chains in the Genus database with same CATH topology
3L0IA 4OAUC 4PL4A 3JSBA 4YZDA 1W3SA 4HFVA 3UITA 2KKMA 2JB2A 3AJFA 4AS2A 2YFAA 4DWLA 2RIOA 4Q9VA 4G75A 4O1PA 1U5KA 2YFBA 4I1TA 2MJFB 4Z7HA 3KP9A 4GXTA 2XMXA 3DA3A 4NV2A 1YO7A 4G76A 2CAZB 3Q8DA 2V6EA 5LNK1 4O1OA 3FBVA 4Z7GA 2A2CA 3LJ2A 3I9V1 4PL5A 4PL3A 2L1LB 3F4MA 2JB3A 2JAEA 2IP6A 2E8GA 3DO9A 1SJ8A 4OAVB 4AS3A 3LJ1A 4NV5A 2JB1A 5HGIA 3DA4A 2XTRA 2V1CC 4YZCA 2ZRRA 3IAS1 2XTQA 2F66B 4YZ9A 4HEA1 2K19A 3P23A 2P22B 4JCVE 2FUG1 3IAM1 3VA9A 2A2DA 4U6RA 2F6MB 3SDJA 3LJ0A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2K19 A;  2IP6 A;  2ZRR A; 
#chains in the Genus database with same CATH topology
 3L0I A;  2QGM A;  4OAU C;  2ETD A;  4PL4 A;  2RAD A;  2RLD A;  3JSB A;  2BL7 A;  4YZD A;  4HFV A;  1W3S A;  2QSB A;  3UIT A;  2KKM A;  2JB2 A;  3AJF A;  3B55 A;  2FU2 A;  4AS2 A;  2YFA A;  4DWL A;  2RIO A;  4Q9V A;  4G75 A;  4O1P A;  1U5K A;  2YFB A;  4I1T A;  2MJF B;  4Z7H A;  3KP9 A;  4GXT A;  2XMX A;  3DA3 A;  4NV2 A;  1TDP A;  1YO7 A;  4G76 A;  2CAZ B;  3Q8D A;  2V6E A;  5LNK 1;  4O1O A;  2QZG A;  3FBV A;  4Z7G A;  2A2C A;  3LJ2 A;  2BL8 A;  3I9V 1;  4PL5 A;  4PL3 A;  2L1L B;  1JQO A;  3F4M A;  2JB3 A;  2JAE A;  2IP6 A;  2E8G A;  3DO9 A;  1SJ8 A;  4OAV B;  4AS3 A;  3LJ1 A;  4NV5 A;  2JB1 A;  5HGI A;  3DA4 A;  2XTR A;  2V1C C;  4YZC A;  2ZRR A;  3FNB A;  3IAS 1;  2HGK A;  2XTQ A;  2F66 B;  2ZW3 A;  3FVV A;  4YZ9 A;  4HEA 1;  2K19 A;  3P23 A;  2P22 B;  2FEF A;  2GSC A;  2JBW A;  4JCV E;  2FUG 1;  3IAM 1;  3VA9 A;  2A2D A;  4U6R A;  2F6M B;  3SDJ A;  3LJ0 A; 
#chains in the Genus database with same CATH homology
 3L0I A;  4OAU C;  4PL4 A;  3JSB A;  4YZD A;  1W3S A;  4HFV A;  3UIT A;  2KKM A;  2JB2 A;  3AJF A;  4AS2 A;  2YFA A;  4DWL A;  2RIO A;  4Q9V A;  4G75 A;  4O1P A;  1U5K A;  2YFB A;  4I1T A;  2MJF B;  4Z7H A;  3KP9 A;  4GXT A;  2XMX A;  3DA3 A;  4NV2 A;  1YO7 A;  4G76 A;  2CAZ B;  3Q8D A;  2V6E A;  5LNK 1;  4O1O A;  3FBV A;  4Z7G A;  2A2C A;  3LJ2 A;  3I9V 1;  4PL5 A;  4PL3 A;  2L1L B;  3F4M A;  2JB3 A;  2JAE A;  2IP6 A;  2E8G A;  3DO9 A;  1SJ8 A;  4OAV B;  4AS3 A;  3LJ1 A;  4NV5 A;  2JB1 A;  5HGI A;  3DA4 A;  2XTR A;  2V1C C;  4YZC A;  2ZRR A;  3IAS 1;  2XTQ A;  2F66 B;  4YZ9 A;  4HEA 1;  2K19 A;  3P23 A;  2P22 B;  4JCV E;  2FUG 1;  3IAM 1;  3VA9 A;  2A2D A;  4U6R A;  2F6M B;  3SDJ A;  3LJ0 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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