3DO9 | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	179
structure length	179
Chain Sequence	PVSVNEKKDFVKWFLNNYQLKQRECVWILNYLMSHDQLMHKVHFVEHAKYCPRGLVMSANCVKDTPFHFFKQNVMTTDAEKSFHDIRLNRDEDIYIQLNFKSSFQNANYVAVLEENPYLPKHIEVNEKDRLLAERFLEESVFSFRRERLLKQIDEALDKQDKEAFHRLTAELKMLEGHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 179 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Bacillus anthracis
publication title	Crystal Structure of Protein Ba1542 from Bacillus Anthracis Str.Ames. rcsb
molecule keywords	UPF0302 protein BA_1542/GBAA1542/BAS1430
total genus	57
structure length	179
sequence length	179
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2008-07-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08858	IDEAL	IDEAL domain
A	PF08864	UPF0302	UPF0302 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1440.290	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	de novo design (two linked rop proteins)	3do9A01

3DO9A
chains in the Genus database with same CATH superfamily

3AJFA 4G75A 3FVVA 2YFAA 3DA4A 4JCVE 4Z7HA 2K19A 1JQOA 2ZRRA 2JB1A 3FBVA 1U5KA 4GXTA 2A2CA 2QZGA 3SDJA 2JAEA 2FUG1 2XTQA 5HGIA 2GSCA 2QGMA 4U6RA 3L0IA 4Q9VA 4PL4A 1TDPA 2A2DA 3DO9A 2HGKA 4PL5A 4OAUC 2BL8A 4NV5A 3VA9A 5LNK1 2JBWA 2QSBA 4O1OA 2YFBA 2L1LB 2ETDA 4DWLA 3I9V1 4HFVA 4I1TA 3B55A 3UITA 2V1CC 3F4MA 1SJ8A 2KKMA 1YO7A 4G76A 3P23A 4YZDA 2CAZB 3LJ0A 2P22B 2MJFB 3LJ1A 4PL3A 2ZW3A 3DA3A 4OAVB 2FU2A 2JB3A 1W3SA 2RIOA 4HEA1 4O1PA 4AS3A 2V6EA 2F6MB 2E8GA 4YZ9A 2XTRA 2JB2A 3JSBA 2F66B 2XMXA 2BL7A 3KP9A 3IAS1 3LJ2A 4Z7GA 3FNBA 4YZCA 2IP6A 2RADA 3IAM1 4AS2A 4NV2A 3Q8DA 2RLDA 2FEFA
chains in the Genus database with same CATH topology

3AJFA 4G75A 2YFAA 3DA4A 4JCVE 4Z7HA 2K19A 2ZRRA 2JB1A 3FBVA 1U5KA 4GXTA 2A2CA 3SDJA 2JAEA 2FUG1 2XTQA 5HGIA 4U6RA 3L0IA 4Q9VA 4PL4A 2A2DA 3DO9A 4PL5A 4OAUC 4NV5A 3VA9A 5LNK1 4O1OA 2YFBA 2L1LB 4DWLA 3I9V1 4HFVA 4I1TA 3UITA 2V1CC 3F4MA 1SJ8A 2KKMA 1YO7A 4G76A 3P23A 4YZDA 2CAZB 3LJ0A 2P22B 2MJFB 3LJ1A 4PL3A 3DA3A 4OAVB 2JB3A 1W3SA 2RIOA 4HEA1 4O1PA 4AS3A 2V6EA 2F6MB 2E8GA 4YZ9A 2XTRA 2JB2A 3JSBA 2F66B 2XMXA 3KP9A 3IAS1 3LJ2A 4Z7GA 4YZCA 2IP6A 3IAM1 4AS2A 4NV2A 3Q8DA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3DO9 A; 
#chains in the Genus database with same CATH topology
 3AJF A;  4G75 A;  3FVV A;  2YFA A;  3DA4 A;  4JCV E;  4Z7H A;  2K19 A;  1JQO A;  2ZRR A;  2JB1 A;  3FBV A;  1U5K A;  4GXT A;  2A2C A;  2QZG A;  3SDJ A;  2JAE A;  2FUG 1;  2XTQ A;  5HGI A;  2GSC A;  2QGM A;  4U6R A;  3L0I A;  4Q9V A;  4PL4 A;  1TDP A;  2A2D A;  3DO9 A;  2HGK A;  4PL5 A;  4OAU C;  2BL8 A;  4NV5 A;  3VA9 A;  5LNK 1;  2JBW A;  2QSB A;  4O1O A;  2YFB A;  2L1L B;  2ETD A;  4DWL A;  3I9V 1;  4HFV A;  4I1T A;  3B55 A;  3UIT A;  2V1C C;  3F4M A;  1SJ8 A;  2KKM A;  1YO7 A;  4G76 A;  3P23 A;  4YZD A;  2CAZ B;  3LJ0 A;  2P22 B;  2MJF B;  3LJ1 A;  4PL3 A;  2ZW3 A;  3DA3 A;  4OAV B;  2FU2 A;  2JB3 A;  1W3S A;  2RIO A;  4HEA 1;  4O1P A;  4AS3 A;  2V6E A;  2F6M B;  2E8G A;  4YZ9 A;  2XTR A;  2JB2 A;  3JSB A;  2F66 B;  2XMX A;  2BL7 A;  3KP9 A;  3IAS 1;  3LJ2 A;  4Z7G A;  3FNB A;  4YZC A;  2IP6 A;  2RAD A;  3IAM 1;  4AS2 A;  4NV2 A;  3Q8D A;  2RLD A;  2FEF A; 
#chains in the Genus database with same CATH homology
 3AJF A;  4G75 A;  2YFA A;  3DA4 A;  4JCV E;  4Z7H A;  2K19 A;  2ZRR A;  2JB1 A;  3FBV A;  1U5K A;  4GXT A;  2A2C A;  3SDJ A;  2JAE A;  2FUG 1;  2XTQ A;  5HGI A;  4U6R A;  3L0I A;  4Q9V A;  4PL4 A;  2A2D A;  3DO9 A;  4PL5 A;  4OAU C;  4NV5 A;  3VA9 A;  5LNK 1;  4O1O A;  2YFB A;  2L1L B;  4DWL A;  3I9V 1;  4HFV A;  4I1T A;  3UIT A;  2V1C C;  3F4M A;  1SJ8 A;  2KKM A;  1YO7 A;  4G76 A;  3P23 A;  4YZD A;  2CAZ B;  3LJ0 A;  2P22 B;  2MJF B;  3LJ1 A;  4PL3 A;  3DA3 A;  4OAV B;  2JB3 A;  1W3S A;  2RIO A;  4HEA 1;  4O1P A;  4AS3 A;  2V6E A;  2F6M B;  2E8G A;  4YZ9 A;  2XTR A;  2JB2 A;  3JSB A;  2F66 B;  2XMX A;  3KP9 A;  3IAS 1;  3LJ2 A;  4Z7G A;  4YZC A;  2IP6 A;  3IAM 1;  4AS2 A;  4NV2 A;  3Q8D A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3DO9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations