3VA9A

Crystal structure of the rhodopseudomonas palustris histidine kinase hk9 sensor domain
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
127
structure length
127
Chain Sequence
TNKALLAISAIQQAVLEAETSERGFLLTGIETYRDSYIRARDALAARLDGLRAVLADNPEQIAHIDELRLLTDMRMAQLGRVVELGPERMREALDILEQARVDRLTERIETSLSVLTRAEQALLIQR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Rhodopseudomonas palustris
publication title Crystal structure of the Rhodopseudomonas palustris histidine kinase HK9 sensor domain
rcsb
molecule keywords Sensor histidine kinase
total genus 59
structure length 127
sequence length 127
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2011-12-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05227 CHASE3 CHASE3 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 3va9A00
2YFBA 3VA9A 2YFAA
chains in the Genus database with same CATH superfamily
2YFBA 3IAM1 2XMXA 3FBVA 2YFAA 2JB3A 5HGIA 1U5KA 4NV5A 4DWLA 2CAZB 4YZCA 2XTRA 2MJFB 5LNK1 1TDPA 3FNBA 4YZDA 2FU2A 2L1LB 3LJ2A 2RADA 2K19A 2P22B 2RLDA 4HFVA 3DA4A 3SDJA 3I9V1 2XTQA 3AJFA 2V6EA 2V1CC 2BL7A 3Q8DA 2IP6A 4O1OA 2GSCA 4Q9VA 2HGKA 3VA9A 3DO9A 2ZW3A 2QSBA 2JB1A 2F66B 4AS3A 4OAVB 4Z7HA 2ZRRA 4OAUC 3B55A 2JBWA 2E8GA 4PL5A 2JAEA 1SJ8A 3DA3A 2QZGA 4AS2A 2ETDA 1JQOA 2BL8A 2A2DA 2F6MB 4JCVE 3UITA 1YO7A 4G76A 3LJ0A 3L0IA 4Z7GA 4YZ9A 1W3SA 3IAS1 4O1PA 2A2CA 4PL4A 4NV2A 2JB2A 4PL3A 2FUG1 3JSBA 3KP9A 2RIOA 4GXTA 3F4MA 4I1TA 3FVVA 4G75A 3LJ1A 4U6RA 2FEFA 2KKMA 3P23A 4HEA1 2QGMA
chains in the Genus database with same CATH topology
2YFBA 3IAM1 2XMXA 3FBVA 2YFAA 2JB3A 5HGIA 1U5KA 4NV5A 4DWLA 2CAZB 4YZCA 2XTRA 2MJFB 5LNK1 4YZDA 2L1LB 3LJ2A 2K19A 2P22B 4HFVA 3DA4A 3SDJA 3I9V1 2XTQA 3AJFA 2V6EA 2V1CC 3Q8DA 2IP6A 4O1OA 4Q9VA 3VA9A 3DO9A 2JB1A 2F66B 4AS3A 4OAVB 4Z7HA 2ZRRA 4OAUC 2E8GA 4PL5A 2JAEA 1SJ8A 3DA3A 4AS2A 2A2DA 2F6MB 4JCVE 3UITA 1YO7A 4G76A 3LJ0A 3L0IA 4Z7GA 4YZ9A 1W3SA 3IAS1 4O1PA 2A2CA 4PL4A 4NV2A 2JB2A 4PL3A 2FUG1 3JSBA 3KP9A 2RIOA 4GXTA 3F4MA 4I1TA 4G75A 3LJ1A 4U6RA 2KKMA 3P23A 4HEA1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YFB A;  3VA9 A;  2YFA A; 
#chains in the Genus database with same CATH topology
 2YFB A;  3IAM 1;  2XMX A;  3FBV A;  2YFA A;  2JB3 A;  5HGI A;  1U5K A;  4NV5 A;  4DWL A;  2CAZ B;  4YZC A;  2XTR A;  2MJF B;  5LNK 1;  1TDP A;  3FNB A;  4YZD A;  2FU2 A;  2L1L B;  3LJ2 A;  2RAD A;  2K19 A;  2P22 B;  2RLD A;  4HFV A;  3DA4 A;  3SDJ A;  3I9V 1;  2XTQ A;  3AJF A;  2V6E A;  2V1C C;  2BL7 A;  3Q8D A;  2IP6 A;  4O1O A;  2GSC A;  4Q9V A;  2HGK A;  3VA9 A;  3DO9 A;  2ZW3 A;  2QSB A;  2JB1 A;  2F66 B;  4AS3 A;  4OAV B;  4Z7H A;  2ZRR A;  4OAU C;  3B55 A;  2JBW A;  2E8G A;  4PL5 A;  2JAE A;  1SJ8 A;  3DA3 A;  2QZG A;  4AS2 A;  2ETD A;  1JQO A;  2BL8 A;  2A2D A;  2F6M B;  4JCV E;  3UIT A;  1YO7 A;  4G76 A;  3LJ0 A;  3L0I A;  4Z7G A;  4YZ9 A;  1W3S A;  3IAS 1;  4O1P A;  2A2C A;  4PL4 A;  4NV2 A;  2JB2 A;  4PL3 A;  2FUG 1;  3JSB A;  3KP9 A;  2RIO A;  4GXT A;  3F4M A;  4I1T A;  3FVV A;  4G75 A;  3LJ1 A;  4U6R A;  2FEF A;  2KKM A;  3P23 A;  4HEA 1;  2QGM A; 
#chains in the Genus database with same CATH homology
 2YFB A;  3IAM 1;  2XMX A;  3FBV A;  2YFA A;  2JB3 A;  5HGI A;  1U5K A;  4NV5 A;  4DWL A;  2CAZ B;  4YZC A;  2XTR A;  2MJF B;  5LNK 1;  4YZD A;  2L1L B;  3LJ2 A;  2K19 A;  2P22 B;  4HFV A;  3DA4 A;  3SDJ A;  3I9V 1;  2XTQ A;  3AJF A;  2V6E A;  2V1C C;  3Q8D A;  2IP6 A;  4O1O A;  4Q9V A;  3VA9 A;  3DO9 A;  2JB1 A;  2F66 B;  4AS3 A;  4OAV B;  4Z7H A;  2ZRR A;  4OAU C;  2E8G A;  4PL5 A;  2JAE A;  1SJ8 A;  3DA3 A;  4AS2 A;  2A2D A;  2F6M B;  4JCV E;  3UIT A;  1YO7 A;  4G76 A;  3LJ0 A;  3L0I A;  4Z7G A;  4YZ9 A;  1W3S A;  3IAS 1;  4O1P A;  2A2C A;  4PL4 A;  4NV2 A;  2JB2 A;  4PL3 A;  2FUG 1;  3JSB A;  3KP9 A;  2RIO A;  4GXT A;  3F4M A;  4I1T A;  4G75 A;  3LJ1 A;  4U6R A;  2KKM A;  3P23 A;  4HEA 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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