4E6FA

Crystal structure of a duf4468 family protein (bacova_04320) from bacteroides ovatus atcc 8483 at 1.49 a resolution
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
171
structure length
171
Chain Sequence
KKDDTRYLVGAVPEVDGKVVFSKEFQIPGMSQAQIYDTMTKWMDERLKENKNIDSRIVFSDEAKGTIAGVGEEWIVFSSSALSLDRTLVNYQITVTCKPGNCLVELEKIRFTYRETEKYKAEEWITDKYALNKAKTKLVRGLAKWRRKTVDFADDMFMDVAVAFGAPDTRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a hypothetical protein (BACOVA_04320) from Bacteroides ovatus ATCC 8483 at 1.49 A resolution
rcsb
molecule tags Unknown function
source organism Bacteroides ovatus
molecule keywords Uncharacterized protein
total genus 42
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14730 DUF4468 Domain of unknown function (DUF4468) with TBP-like fold
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.530.80 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 4e6fA00
4JHYA 4E6FA
chains in the Genus database with same CATH superfamily
4JHHA 5JO2A 3HVRA 3NMVA 3QN1A 2LEQA 4BKDA 3HM9A 3FO5A 1X53A 4DS8A 4A88A 3HK2A 4REHA 4LG5A 1XFSA 2QIMA 1XUVA 3F73A 3IJTA 3KDHA 3NEFA 2YH6A 3H3SA 3KL1A 3E85A 1LLTA 2M89A 4DSCA 4LGBA 4Y31A 2FFSA 4A8UA 5JNNA 4N41A 3HJFA 4LA7A 2E3MA 3H3QA 1JSSA 4C94A 2Q3QA 4C9IA 5I9JA 4A85A 3H3TA 2L8OA 3F08A 3OTLA 3GTSA 4BKCA 3GOBA 2N4AA 3NR4A 4QDFA 2M47A 1TXCA 3GL0A 4QCKA 2GKDA 1QMRA 2N4BA 1KCMA 4OICA 3OJIA 1ZXFA 3NMNA 3KB3A 4QDFB 4A83A 3HXMA 2Z9ZA 2VNEA 3KDIA 2LF2A 2LAKA 4FPWA 4IGYA 4JDAA 3C0VA 4B9RA 4MA6A 2KEWA 3K3KA 4LGAA 3TGOC 4IH0A 3KLXA 3DLHA 2VQ5A 3R6PA 2ZYLA 4IH2A 3NI8A 4PSBA 3RD6A 4MAPA 3NMTA 4M9WA 5EKQC 1IFVA 1UW5A 2RERA 3H3RA 4IGXA 4A87A 1LN3A 4A8VA 1VJHA 4BK7A 4DSBA 1TW0A 5C9YA 4IGVA 3TVRA 1T27A 3Q64A 2E3PA 1E09A 4NCBA 4BTZA 3NQNA 4A81A 3PUTA 4WVOA 3ELIA 4Q0KA 2LPXA 4JDLA 2IL5A 2RESA 2E3QA 3IE5A 3NMHA 5AMWA 3W9RA 1H2OA 4IGWA 2PSOA 1XN6A 1LN1A 2QPVA 5E4MA 3CNWA 2E3SA 2LGHA 3JRQB 3NJ1A 1LN2A 3GGNA 4REJA 4N3EA 2BK0A 4Z3LA 2A1LA 3GKEA 2EJXA 3K90A 5BRLA 3HO1A 5E4DA 1BV1A 5I8FA 3NJ0A 3UIDA 4MNSA 5E4BA 4N76A 3NJOA 4M9BA 1EM2A 2PCSA 1XDFA 4REIA 3DLBA 1BTVA 1FSKA 2K7HA 2NN5A 4A8GA 3UJLA 2LIOA 2LCGA 3P0LA 4N0GC 4NCAA 3GTEA 3KB0A 2E3OA 3NS2A 4QDCA 4JHGA 1XN5A 2E3NA 3NEGA 2KCZA 2D4RA 3ZVUA 2LAFA 3KDJA 4QIPA 4BK6A 3QSZA 4GY9A 4RYVA 3P51A 2LE1A 4IHRA 4R7KA 3OH8A 3TVQA 4E6FA 4XRTA 2KF2A 4JHYA 3PU2A 2Z9YA 1FM4A 4QDDA 2REZA 1B6FA 2L9PA 2KTEA 3GB4A 2FLHA 3Q63A 4JHIA 2K5GA 3Q6AA 1ICXA 4A80A 4XRWA 4KPYA 3RT0C 2E3RA 3W9KA 5JO1A 2I9YA 2LDKA 3UQHA 1Z94A 3JRSA 3KAZA 2NS9A 3WG8A 1T17A 3NMPA 3RT2A 3OQUA 2WQLA 2L65A 2MOUA 3TFZA 3KAYA 2R55A 4A84A 3TL1A 4A86A 3GL2A 3P9VA 4N47A 4C9CA 5E46A 2LUZA
chains in the Genus database with same CATH topology
4JHHA 5JO2A 3HVRA 3NMVA 3QN1A 2LEQA 4BKDA 3HM9A 3FO5A 1X53A 4DS8A 4A88A 3HK2A 4REHA 4LG5A 1XFSA 2QIMA 1XUVA 3F73A 3IJTA 3KDHA 3NEFA 2YH6A 3H3SA 3KL1A 3E85A 1LLTA 2M89A 4DSCA 4LGBA 4Y31A 2FFSA 4A8UA 5JNNA 4N41A 3HJFA 4LA7A 2E3MA 3H3QA 1JSSA 4C94A 2Q3QA 4C9IA 5I9JA 4A85A 3H3TA 2L8OA 3F08A 3OTLA 3GTSA 4BKCA 3GOBA 2N4AA 3NR4A 4QDFA 2M47A 1TXCA 3GL0A 4QCKA 2GKDA 1QMRA 2N4BA 1KCMA 4OICA 3OJIA 1ZXFA 3NMNA 3KB3A 4QDFB 4A83A 3HXMA 2Z9ZA 2VNEA 3KDIA 2LF2A 2LAKA 4FPWA 4IGYA 4JDAA 3C0VA 4B9RA 4MA6A 2KEWA 3K3KA 4LGAA 3TGOC 4IH0A 3KLXA 3DLHA 2VQ5A 3R6PA 2ZYLA 4IH2A 3NI8A 4PSBA 3RD6A 4MAPA 3NMTA 4M9WA 5EKQC 1IFVA 1UW5A 2RERA 3H3RA 4IGXA 4A87A 1LN3A 4A8VA 1VJHA 4BK7A 4DSBA 1TW0A 5C9YA 4IGVA 3TVRA 1T27A 3Q64A 2E3PA 1E09A 4NCBA 4BTZA 3NQNA 4A81A 3PUTA 4WVOA 3ELIA 4Q0KA 2LPXA 4JDLA 2IL5A 2RESA 2E3QA 3IE5A 3NMHA 5AMWA 3W9RA 1H2OA 4IGWA 2PSOA 1XN6A 1LN1A 2QPVA 5E4MA 3CNWA 2E3SA 2LGHA 3JRQB 3NJ1A 1LN2A 3GGNA 4REJA 4N3EA 2BK0A 4Z3LA 2A1LA 3GKEA 2EJXA 3K90A 5BRLA 3HO1A 5E4DA 1BV1A 5I8FA 3NJ0A 3UIDA 4MNSA 5E4BA 4N76A 3NJOA 4M9BA 1EM2A 2PCSA 1XDFA 4REIA 3DLBA 1BTVA 1FSKA 2K7HA 2NN5A 4A8GA 3UJLA 2LIOA 2LCGA 3P0LA 4N0GC 4NCAA 3GTEA 3KB0A 2E3OA 3NS2A 4QDCA 4JHGA 1XN5A 2E3NA 3NEGA 2KCZA 2D4RA 3ZVUA 2LAFA 3KDJA 4QIPA 4BK6A 3QSZA 4GY9A 4RYVA 3P51A 2LE1A 4IHRA 4R7KA 3OH8A 3TVQA 4E6FA 4XRTA 2KF2A 4JHYA 3PU2A 2Z9YA 1FM4A 4QDDA 2REZA 1B6FA 2L9PA 2KTEA 3GB4A 2FLHA 3Q63A 4JHIA 2K5GA 3Q6AA 1ICXA 4A80A 4XRWA 4KPYA 3RT0C 2E3RA 3W9KA 5JO1A 2I9YA 2LDKA 3UQHA 1Z94A 3JRSA 3KAZA 2NS9A 3WG8A 1T17A 3NMPA 3RT2A 3OQUA 2WQLA 2L65A 2MOUA 3TFZA 3KAYA 2R55A 4A84A 3TL1A 4A86A 3GL2A 3P9VA 4N47A 4C9CA 5E46A 2LUZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JHY A;  4E6F A; 
#chains in the Genus database with same CATH topology
 4JHH A;  5JO2 A;  3HVR A;  3NMV A;  3QN1 A;  2LEQ A;  4BKD A;  3HM9 A;  3FO5 A;  1X53 A;  4DS8 A;  4A88 A;  3HK2 A;  4REH A;  4LG5 A;  1XFS A;  2QIM A;  1XUV A;  3F73 A;  3IJT A;  3KDH A;  3NEF A;  2YH6 A;  3H3S A;  3KL1 A;  3E85 A;  1LLT A;  2M89 A;  4DSC A;  4LGB A;  4Y31 A;  2FFS A;  4A8U A;  5JNN A;  4N41 A;  3HJF A;  4LA7 A;  2E3M A;  3H3Q A;  1JSS A;  4C94 A;  2Q3Q A;  4C9I A;  5I9J A;  4A85 A;  3H3T A;  2L8O A;  3F08 A;  3OTL A;  3GTS A;  4BKC A;  3GOB A;  2N4A A;  3NR4 A;  4QDF A;  2M47 A;  1TXC A;  3GL0 A;  4QCK A;  2GKD A;  1QMR A;  2N4B A;  1KCM A;  4OIC A;  3OJI A;  1ZXF A;  3NMN A;  3KB3 A;  4QDF B;  4A83 A;  3HXM A;  2Z9Z A;  2VNE A;  3KDI A;  2LF2 A;  2LAK A;  4FPW A;  4IGY A;  4JDA A;  3C0V A;  4B9R A;  4MA6 A;  2KEW A;  3K3K A;  4LGA A;  3TGO C;  4IH0 A;  3KLX A;  3DLH A;  2VQ5 A;  3R6P A;  2ZYL A;  4IH2 A;  3NI8 A;  4PSB A;  3RD6 A;  4MAP A;  3NMT A;  4M9W A;  5EKQ C;  1IFV A;  1UW5 A;  2RER A;  3H3R A;  4IGX A;  4A87 A;  1LN3 A;  4A8V A;  1VJH A;  4BK7 A;  4DSB A;  1TW0 A;  5C9Y A;  4IGV A;  3TVR A;  1T27 A;  3Q64 A;  2E3P A;  1E09 A;  4NCB A;  4BTZ A;  3NQN A;  4A81 A;  3PUT A;  4WVO A;  3ELI A;  4Q0K A;  2LPX A;  4JDL A;  2IL5 A;  2RES A;  2E3Q A;  3IE5 A;  3NMH A;  5AMW A;  3W9R A;  1H2O A;  4IGW A;  2PSO A;  1XN6 A;  1LN1 A;  2QPV A;  5E4M A;  3CNW A;  2E3S A;  2LGH A;  3JRQ B;  3NJ1 A;  1LN2 A;  3GGN A;  4REJ A;  4N3E A;  2BK0 A;  4Z3L A;  2A1L A;  3GKE A;  2EJX A;  3K90 A;  5BRL A;  3HO1 A;  5E4D A;  1BV1 A;  5I8F A;  3NJ0 A;  3UID A;  4MNS A;  5E4B A;  4N76 A;  3NJO A;  4M9B A;  1EM2 A;  2PCS A;  1XDF A;  4REI A;  3DLB A;  1BTV A;  1FSK A;  2K7H A;  2NN5 A;  4A8G A;  3UJL A;  2LIO A;  2LCG A;  3P0L A;  4N0G C;  4NCA A;  3GTE A;  3KB0 A;  2E3O A;  3NS2 A;  4QDC A;  4JHG A;  1XN5 A;  2E3N A;  3NEG A;  2KCZ A;  2D4R A;  3ZVU A;  2LAF A;  3KDJ A;  4QIP A;  4BK6 A;  3QSZ A;  4GY9 A;  4RYV A;  3P51 A;  2LE1 A;  4IHR A;  4R7K A;  3OH8 A;  3TVQ A;  4E6F A;  4XRT A;  2KF2 A;  4JHY A;  3PU2 A;  2Z9Y A;  1FM4 A;  4QDD A;  2REZ A;  1B6F A;  2L9P A;  2KTE A;  3GB4 A;  2FLH A;  3Q63 A;  4JHI A;  2K5G A;  3Q6A A;  1ICX A;  4A80 A;  4XRW A;  4KPY A;  3RT0 C;  2E3R A;  3W9K A;  5JO1 A;  2I9Y A;  2LDK A;  3UQH A;  1Z94 A;  3JRS A;  3KAZ A;  2NS9 A;  3WG8 A;  1T17 A;  3NMP A;  3RT2 A;  3OQU A;  2WQL A;  2L65 A;  2MOU A;  3TFZ A;  3KAY A;  2R55 A;  4A84 A;  3TL1 A;  4A86 A;  3GL2 A;  3P9V A;  4N47 A;  4C9C A;  5E46 A;  2LUZ A; 
#chains in the Genus database with same CATH homology
 4JHH A;  5JO2 A;  3HVR A;  3NMV A;  3QN1 A;  2LEQ A;  4BKD A;  3HM9 A;  3FO5 A;  1X53 A;  4DS8 A;  4A88 A;  3HK2 A;  4REH A;  4LG5 A;  1XFS A;  2QIM A;  1XUV A;  3F73 A;  3IJT A;  3KDH A;  3NEF A;  2YH6 A;  3H3S A;  3KL1 A;  3E85 A;  1LLT A;  2M89 A;  4DSC A;  4LGB A;  4Y31 A;  2FFS A;  4A8U A;  5JNN A;  4N41 A;  3HJF A;  4LA7 A;  2E3M A;  3H3Q A;  1JSS A;  4C94 A;  2Q3Q A;  4C9I A;  5I9J A;  4A85 A;  3H3T A;  2L8O A;  3F08 A;  3OTL A;  3GTS A;  4BKC A;  3GOB A;  2N4A A;  3NR4 A;  4QDF A;  2M47 A;  1TXC A;  3GL0 A;  4QCK A;  2GKD A;  1QMR A;  2N4B A;  1KCM A;  4OIC A;  3OJI A;  1ZXF A;  3NMN A;  3KB3 A;  4QDF B;  4A83 A;  3HXM A;  2Z9Z A;  2VNE A;  3KDI A;  2LF2 A;  2LAK A;  4FPW A;  4IGY A;  4JDA A;  3C0V A;  4B9R A;  4MA6 A;  2KEW A;  3K3K A;  4LGA A;  3TGO C;  4IH0 A;  3KLX A;  3DLH A;  2VQ5 A;  3R6P A;  2ZYL A;  4IH2 A;  3NI8 A;  4PSB A;  3RD6 A;  4MAP A;  3NMT A;  4M9W A;  5EKQ C;  1IFV A;  1UW5 A;  2RER A;  3H3R A;  4IGX A;  4A87 A;  1LN3 A;  4A8V A;  1VJH A;  4BK7 A;  4DSB A;  1TW0 A;  5C9Y A;  4IGV A;  3TVR A;  1T27 A;  3Q64 A;  2E3P A;  1E09 A;  4NCB A;  4BTZ A;  3NQN A;  4A81 A;  3PUT A;  4WVO A;  3ELI A;  4Q0K A;  2LPX A;  4JDL A;  2IL5 A;  2RES A;  2E3Q A;  3IE5 A;  3NMH A;  5AMW A;  3W9R A;  1H2O A;  4IGW A;  2PSO A;  1XN6 A;  1LN1 A;  2QPV A;  5E4M A;  3CNW A;  2E3S A;  2LGH A;  3JRQ B;  3NJ1 A;  1LN2 A;  3GGN A;  4REJ A;  4N3E A;  2BK0 A;  4Z3L A;  2A1L A;  3GKE A;  2EJX A;  3K90 A;  5BRL A;  3HO1 A;  5E4D A;  1BV1 A;  5I8F A;  3NJ0 A;  3UID A;  4MNS A;  5E4B A;  4N76 A;  3NJO A;  4M9B A;  1EM2 A;  2PCS A;  1XDF A;  4REI A;  3DLB A;  1BTV A;  1FSK A;  2K7H A;  2NN5 A;  4A8G A;  3UJL A;  2LIO A;  2LCG A;  3P0L A;  4N0G C;  4NCA A;  3GTE A;  3KB0 A;  2E3O A;  3NS2 A;  4QDC A;  4JHG A;  1XN5 A;  2E3N A;  3NEG A;  2KCZ A;  2D4R A;  3ZVU A;  2LAF A;  3KDJ A;  4QIP A;  4BK6 A;  3QSZ A;  4GY9 A;  4RYV A;  3P51 A;  2LE1 A;  4IHR A;  4R7K A;  3OH8 A;  3TVQ A;  4E6F A;  4XRT A;  2KF2 A;  4JHY A;  3PU2 A;  2Z9Y A;  1FM4 A;  4QDD A;  2REZ A;  1B6F A;  2L9P A;  2KTE A;  3GB4 A;  2FLH A;  3Q63 A;  4JHI A;  2K5G A;  3Q6A A;  1ICX A;  4A80 A;  4XRW A;  4KPY A;  3RT0 C;  2E3R A;  3W9K A;  5JO1 A;  2I9Y A;  2LDK A;  3UQH A;  1Z94 A;  3JRS A;  3KAZ A;  2NS9 A;  3WG8 A;  1T17 A;  3NMP A;  3RT2 A;  3OQU A;  2WQL A;  2L65 A;  2MOU A;  3TFZ A;  3KAY A;  2R55 A;  4A84 A;  3TL1 A;  4A86 A;  3GL2 A;  3P9V A;  4N47 A;  4C9C A;  5E46 A;  2LUZ A; 
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similar chains in the pdb database (?% sequence similarity)

 
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