4E6FA

Crystal structure of a duf4468 family protein (bacova_04320) from bacteroides ovatus atcc 8483 at 1.49 a resolution
Total Genus 42
204060801001201401600510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
171
structure length
171
Chain Sequence
KKDDTRYLVGAVPEVDGKVVFSKEFQIPGMSQAQIYDTMTKWMDERLKENKNIDSRIVFSDEAKGTIAGVGEEWIVFSSSALSLDRTLVNYQITVTCKPGNCLVELEKIRFTYRETEKYKAEEWITDKYALNKAKTKLVRGLAKWRRKTVDFADDMFMDVAVAFGAPDTRP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS7 (146-149)S5 (112-127)TI1 (34-37)TIV1 (33-36)TII1 (37-40)TVIII1 (39-42)S1 (43-44)TIV5 (152-155)3H1 (67-70)S2 (47-55)TIV2 (43-46)S3 (85-90)AH1 (61-66)3H2 (91-93)TI2 (81-84)AH2 (73-79)S6 (130-142)S4 (95-109)TI3 (109-112)TII2 (127-130)TI'2 (142-145)AH3 (156-159)TI4 (161-164)3H3 (150-152)TIV3 (141-144)Updating...
connected with : NaN
molecule tags Unknown function
source organism Bacteroides ovatus
publication title Crystal structure of a hypothetical protein (BACOVA_04320) from Bacteroides ovatus ATCC 8483 at 1.49 A resolution
rcsb
molecule keywords Uncharacterized protein
total genus 42
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14730 DUF4468 Domain of unknown function (DUF4468) with TBP-like fold
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.530.80 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 4e6fA00
4E6FA 4JHYA
chains in the Genus database with same CATH superfamily
2LGHA 1H2OA 5I9JA 4IGYA 4LGBA 4C94A 2E3RA 3DLBA 3P9VA 3KLXA 3NJ1A 3C0VA 3IE5A 4OICA 4C9CA 2IL5A 5E4MA 4A80A 2LUZA 3NMTA 2E3QA 3H3SA 4IH2A 2PSOA 4XRWA 5JO1A 3UIDA 3NEFA 5JO2A 3GKEA 1XFSA 3HXMA 2YH6A 3QN1A 3QSZA 3H3TA 1IFVA 4QDFA 4MAPA 1BV1A 4IHRA 4GY9A 4A8VA 4M9BA 4QDFB 3OTLA 3WG8A 2NN5A 3KAYA 5BRLA 3NMNA 4QCKA 3UQHA 2EJXA 2LE1A 4A84A 3ZVUA 1XN6A 1X53A 3FO5A 4QIPA 2E3MA 2M47A 1VJHA 3UJLA 5I8FA 2Z9YA 2GKDA 3P0LA 3K3KA 4JHYA 4RYVA 2K7HA 4LG5A 2K5GA 2REZA 4JHIA 3HJFA 5EKQC 3GTSA 1UW5A 2LF2A 4C9IA 3NJ0A 5E4BA 4BTZA 2FFSA 4E6FA 4BKDA 1Z94A 2E3SA 2RESA 2R55A 2Q3QA 3PUTA 1LN1A 4JHHA 2LCGA 4JHGA 4M9WA 3TL1A 1ICXA 5AMWA 3GTEA 1LLTA 2LIOA 2ZYLA 4FPWA 1TXCA 2BK0A 2KF2A 3Q63A 3GL2A 2E3NA 1FSKA 3OJIA 4LA7A 4KPYA 3JRSA 1B6FA 2NS9A 3OQUA 3DLHA 2RERA 1EM2A 2LPXA 3NQNA 3NMPA 3PU2A 4JDAA 4REJA 3TVRA 4BK7A 4NCBA 4QDCA 1E09A 3R6PA 3E85A 2PCSA 3CNWA 1LN2A 1XN5A 2E3PA 3NMHA 4A88A 2QPVA 3HM9A 3NEGA 3TGOC 3H3QA 3NMVA 3KDJA 2MOUA 2LEQA 3F08A 3GB4A 4N76A 3W9KA 4BK6A 2D4RA 4JDLA 2I9YA 4A85A 1XDFA 4DSBA 2L9PA 2LAKA 4N47A 3OH8A 3NR4A 4Z3LA 3KB0A 3JRQB 3Q6AA 3ELIA 4A8UA 4QDDA 4NCAA 4A86A 2VNEA 2LDKA 2QIMA 4LGAA 4REIA 1TW0A 3GOBA 2L8OA 3NI8A 2VQ5A 3K90A 4B9RA 1FM4A 5E46A 4N41A 3GL0A 3H3RA 1BTVA 2WQLA 3KDIA 3RT0C 5C9YA 2KCZA 3NJOA 4DS8A 3HK2A 4R7KA 2N4AA 2N4BA 3RT2A 3HO1A 3Q64A 4IH0A 2E3OA 3RD6A 3TFZA 4IGVA 3NS2A 4IGWA 2L65A 3KB3A 4BKCA 4MNSA 1T27A 1XUVA 3IJTA 3KDHA 4N3EA 2Z9ZA 1T17A 3KL1A 2LAFA 4PSBA 4DSCA 3F73A 4A87A 1QMRA 2M89A 4Q0KA 3W9RA 2FLHA 4MA6A 3P51A 4IGXA 4XRTA 5JNNA 4Y31A 5E4DA 1JSSA 1KCMA 2A1LA 4N0GC 4REHA 4A83A 1ZXFA 2KEWA 3HVRA 4A8GA 1LN3A 3KAZA 3TVQA 4A81A 3GGNA 4WVOA 2KTEA
chains in the Genus database with same CATH topology
2LGHA 1H2OA 5I9JA 4IGYA 4LGBA 4C94A 2E3RA 3DLBA 3P9VA 3KLXA 3NJ1A 3C0VA 3IE5A 4OICA 4C9CA 2IL5A 5E4MA 4A80A 2LUZA 3NMTA 2E3QA 3H3SA 4IH2A 2PSOA 4XRWA 5JO1A 3UIDA 3NEFA 5JO2A 3GKEA 1XFSA 3HXMA 2YH6A 3QN1A 3QSZA 3H3TA 1IFVA 4QDFA 4MAPA 1BV1A 4IHRA 4GY9A 4A8VA 4M9BA 4QDFB 3OTLA 3WG8A 2NN5A 3KAYA 5BRLA 3NMNA 4QCKA 3UQHA 2EJXA 2LE1A 4A84A 3ZVUA 1XN6A 1X53A 3FO5A 4QIPA 2E3MA 2M47A 1VJHA 3UJLA 5I8FA 2Z9YA 2GKDA 3P0LA 3K3KA 4JHYA 4RYVA 2K7HA 4LG5A 2K5GA 2REZA 4JHIA 3HJFA 5EKQC 3GTSA 1UW5A 2LF2A 4C9IA 3NJ0A 5E4BA 4BTZA 2FFSA 4E6FA 4BKDA 1Z94A 2E3SA 2RESA 2R55A 2Q3QA 3PUTA 1LN1A 4JHHA 2LCGA 4JHGA 4M9WA 3TL1A 1ICXA 5AMWA 3GTEA 1LLTA 2LIOA 2ZYLA 4FPWA 1TXCA 2BK0A 2KF2A 3Q63A 3GL2A 2E3NA 1FSKA 3OJIA 4LA7A 4KPYA 3JRSA 1B6FA 2NS9A 3OQUA 3DLHA 2RERA 1EM2A 2LPXA 3NQNA 3NMPA 3PU2A 4JDAA 4REJA 3TVRA 4BK7A 4NCBA 4QDCA 1E09A 3R6PA 3E85A 2PCSA 3CNWA 1LN2A 1XN5A 2E3PA 3NMHA 4A88A 2QPVA 3HM9A 3NEGA 3TGOC 3H3QA 3NMVA 3KDJA 2MOUA 2LEQA 3F08A 3GB4A 4N76A 3W9KA 4BK6A 2D4RA 4JDLA 2I9YA 4A85A 1XDFA 4DSBA 2L9PA 2LAKA 4N47A 3OH8A 3NR4A 4Z3LA 3KB0A 3JRQB 3Q6AA 3ELIA 4A8UA 4QDDA 4NCAA 4A86A 2VNEA 2LDKA 2QIMA 4LGAA 4REIA 1TW0A 3GOBA 2L8OA 3NI8A 2VQ5A 3K90A 4B9RA 1FM4A 5E46A 4N41A 3GL0A 3H3RA 1BTVA 2WQLA 3KDIA 3RT0C 5C9YA 2KCZA 3NJOA 4DS8A 3HK2A 4R7KA 2N4AA 2N4BA 3RT2A 3HO1A 3Q64A 4IH0A 2E3OA 3RD6A 3TFZA 4IGVA 3NS2A 4IGWA 2L65A 3KB3A 4BKCA 4MNSA 1T27A 1XUVA 3IJTA 3KDHA 4N3EA 2Z9ZA 1T17A 3KL1A 2LAFA 4PSBA 4DSCA 3F73A 4A87A 1QMRA 2M89A 4Q0KA 3W9RA 2FLHA 4MA6A 3P51A 4IGXA 4XRTA 5JNNA 4Y31A 5E4DA 1JSSA 1KCMA 2A1LA 4N0GC 4REHA 4A83A 1ZXFA 2KEWA 3HVRA 4A8GA 1LN3A 3KAZA 3TVQA 4A81A 3GGNA 4WVOA 2KTEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E6F A;  4JHY A; 
#chains in the Genus database with same CATH topology
 2LGH A;  1H2O A;  5I9J A;  4IGY A;  4LGB A;  4C94 A;  2E3R A;  3DLB A;  3P9V A;  3KLX A;  3NJ1 A;  3C0V A;  3IE5 A;  4OIC A;  4C9C A;  2IL5 A;  5E4M A;  4A80 A;  2LUZ A;  3NMT A;  2E3Q A;  3H3S A;  4IH2 A;  2PSO A;  4XRW A;  5JO1 A;  3UID A;  3NEF A;  5JO2 A;  3GKE A;  1XFS A;  3HXM A;  2YH6 A;  3QN1 A;  3QSZ A;  3H3T A;  1IFV A;  4QDF A;  4MAP A;  1BV1 A;  4IHR A;  4GY9 A;  4A8V A;  4M9B A;  4QDF B;  3OTL A;  3WG8 A;  2NN5 A;  3KAY A;  5BRL A;  3NMN A;  4QCK A;  3UQH A;  2EJX A;  2LE1 A;  4A84 A;  3ZVU A;  1XN6 A;  1X53 A;  3FO5 A;  4QIP A;  2E3M A;  2M47 A;  1VJH A;  3UJL A;  5I8F A;  2Z9Y A;  2GKD A;  3P0L A;  3K3K A;  4JHY A;  4RYV A;  2K7H A;  4LG5 A;  2K5G A;  2REZ A;  4JHI A;  3HJF A;  5EKQ C;  3GTS A;  1UW5 A;  2LF2 A;  4C9I A;  3NJ0 A;  5E4B A;  4BTZ A;  2FFS A;  4E6F A;  4BKD A;  1Z94 A;  2E3S A;  2RES A;  2R55 A;  2Q3Q A;  3PUT A;  1LN1 A;  4JHH A;  2LCG A;  4JHG A;  4M9W A;  3TL1 A;  1ICX A;  5AMW A;  3GTE A;  1LLT A;  2LIO A;  2ZYL A;  4FPW A;  1TXC A;  2BK0 A;  2KF2 A;  3Q63 A;  3GL2 A;  2E3N A;  1FSK A;  3OJI A;  4LA7 A;  4KPY A;  3JRS A;  1B6F A;  2NS9 A;  3OQU A;  3DLH A;  2RER A;  1EM2 A;  2LPX A;  3NQN A;  3NMP A;  3PU2 A;  4JDA A;  4REJ A;  3TVR A;  4BK7 A;  4NCB A;  4QDC A;  1E09 A;  3R6P A;  3E85 A;  2PCS A;  3CNW A;  1LN2 A;  1XN5 A;  2E3P A;  3NMH A;  4A88 A;  2QPV A;  3HM9 A;  3NEG A;  3TGO C;  3H3Q A;  3NMV A;  3KDJ A;  2MOU A;  2LEQ A;  3F08 A;  3GB4 A;  4N76 A;  3W9K A;  4BK6 A;  2D4R A;  4JDL A;  2I9Y A;  4A85 A;  1XDF A;  4DSB A;  2L9P A;  2LAK A;  4N47 A;  3OH8 A;  3NR4 A;  4Z3L A;  3KB0 A;  3JRQ B;  3Q6A A;  3ELI A;  4A8U A;  4QDD A;  4NCA A;  4A86 A;  2VNE A;  2LDK A;  2QIM A;  4LGA A;  4REI A;  1TW0 A;  3GOB A;  2L8O A;  3NI8 A;  2VQ5 A;  3K90 A;  4B9R A;  1FM4 A;  5E46 A;  4N41 A;  3GL0 A;  3H3R A;  1BTV A;  2WQL A;  3KDI A;  3RT0 C;  5C9Y A;  2KCZ A;  3NJO A;  4DS8 A;  3HK2 A;  4R7K A;  2N4A A;  2N4B A;  3RT2 A;  3HO1 A;  3Q64 A;  4IH0 A;  2E3O A;  3RD6 A;  3TFZ A;  4IGV A;  3NS2 A;  4IGW A;  2L65 A;  3KB3 A;  4BKC A;  4MNS A;  1T27 A;  1XUV A;  3IJT A;  3KDH A;  4N3E A;  2Z9Z A;  1T17 A;  3KL1 A;  2LAF A;  4PSB A;  4DSC A;  3F73 A;  4A87 A;  1QMR A;  2M89 A;  4Q0K A;  3W9R A;  2FLH A;  4MA6 A;  3P51 A;  4IGX A;  4XRT A;  5JNN A;  4Y31 A;  5E4D A;  1JSS A;  1KCM A;  2A1L A;  4N0G C;  4REH A;  4A83 A;  1ZXF A;  2KEW A;  3HVR A;  4A8G A;  1LN3 A;  3KAZ A;  3TVQ A;  4A81 A;  3GGN A;  4WVO A;  2KTE A; 
#chains in the Genus database with same CATH homology
 2LGH A;  1H2O A;  5I9J A;  4IGY A;  4LGB A;  4C94 A;  2E3R A;  3DLB A;  3P9V A;  3KLX A;  3NJ1 A;  3C0V A;  3IE5 A;  4OIC A;  4C9C A;  2IL5 A;  5E4M A;  4A80 A;  2LUZ A;  3NMT A;  2E3Q A;  3H3S A;  4IH2 A;  2PSO A;  4XRW A;  5JO1 A;  3UID A;  3NEF A;  5JO2 A;  3GKE A;  1XFS A;  3HXM A;  2YH6 A;  3QN1 A;  3QSZ A;  3H3T A;  1IFV A;  4QDF A;  4MAP A;  1BV1 A;  4IHR A;  4GY9 A;  4A8V A;  4M9B A;  4QDF B;  3OTL A;  3WG8 A;  2NN5 A;  3KAY A;  5BRL A;  3NMN A;  4QCK A;  3UQH A;  2EJX A;  2LE1 A;  4A84 A;  3ZVU A;  1XN6 A;  1X53 A;  3FO5 A;  4QIP A;  2E3M A;  2M47 A;  1VJH A;  3UJL A;  5I8F A;  2Z9Y A;  2GKD A;  3P0L A;  3K3K A;  4JHY A;  4RYV A;  2K7H A;  4LG5 A;  2K5G A;  2REZ A;  4JHI A;  3HJF A;  5EKQ C;  3GTS A;  1UW5 A;  2LF2 A;  4C9I A;  3NJ0 A;  5E4B A;  4BTZ A;  2FFS A;  4E6F A;  4BKD A;  1Z94 A;  2E3S A;  2RES A;  2R55 A;  2Q3Q A;  3PUT A;  1LN1 A;  4JHH A;  2LCG A;  4JHG A;  4M9W A;  3TL1 A;  1ICX A;  5AMW A;  3GTE A;  1LLT A;  2LIO A;  2ZYL A;  4FPW A;  1TXC A;  2BK0 A;  2KF2 A;  3Q63 A;  3GL2 A;  2E3N A;  1FSK A;  3OJI A;  4LA7 A;  4KPY A;  3JRS A;  1B6F A;  2NS9 A;  3OQU A;  3DLH A;  2RER A;  1EM2 A;  2LPX A;  3NQN A;  3NMP A;  3PU2 A;  4JDA A;  4REJ A;  3TVR A;  4BK7 A;  4NCB A;  4QDC A;  1E09 A;  3R6P A;  3E85 A;  2PCS A;  3CNW A;  1LN2 A;  1XN5 A;  2E3P A;  3NMH A;  4A88 A;  2QPV A;  3HM9 A;  3NEG A;  3TGO C;  3H3Q A;  3NMV A;  3KDJ A;  2MOU A;  2LEQ A;  3F08 A;  3GB4 A;  4N76 A;  3W9K A;  4BK6 A;  2D4R A;  4JDL A;  2I9Y A;  4A85 A;  1XDF A;  4DSB A;  2L9P A;  2LAK A;  4N47 A;  3OH8 A;  3NR4 A;  4Z3L A;  3KB0 A;  3JRQ B;  3Q6A A;  3ELI A;  4A8U A;  4QDD A;  4NCA A;  4A86 A;  2VNE A;  2LDK A;  2QIM A;  4LGA A;  4REI A;  1TW0 A;  3GOB A;  2L8O A;  3NI8 A;  2VQ5 A;  3K90 A;  4B9R A;  1FM4 A;  5E46 A;  4N41 A;  3GL0 A;  3H3R A;  1BTV A;  2WQL A;  3KDI A;  3RT0 C;  5C9Y A;  2KCZ A;  3NJO A;  4DS8 A;  3HK2 A;  4R7K A;  2N4A A;  2N4B A;  3RT2 A;  3HO1 A;  3Q64 A;  4IH0 A;  2E3O A;  3RD6 A;  3TFZ A;  4IGV A;  3NS2 A;  4IGW A;  2L65 A;  3KB3 A;  4BKC A;  4MNS A;  1T27 A;  1XUV A;  3IJT A;  3KDH A;  4N3E A;  2Z9Z A;  1T17 A;  3KL1 A;  2LAF A;  4PSB A;  4DSC A;  3F73 A;  4A87 A;  1QMR A;  2M89 A;  4Q0K A;  3W9R A;  2FLH A;  4MA6 A;  3P51 A;  4IGX A;  4XRT A;  5JNN A;  4Y31 A;  5E4D A;  1JSS A;  1KCM A;  2A1L A;  4N0G C;  4REH A;  4A83 A;  1ZXF A;  2KEW A;  3HVR A;  4A8G A;  1LN3 A;  3KAZ A;  3TVQ A;  4A81 A;  3GGN A;  4WVO A;  2KTE A; 
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