4JDL | Genus

Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	20
sequence length	167
structure length	153
Chain Sequence	RGMHVPEHVAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQLHVGDLREVMVLPAVSSTERLEILDEERHVISFSVVGGDHRLKNYRSVTTLVVVESYIVDVPPGNTEEETLSFVDTIVRCNLQSLARSTNRQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hormone receptor
source organism	Arabidopsis thaliana
publication title	Structural Insights into the Abscisic Acid Stereospecificity by the ABA Receptors PYR/PYL/RCAR pubmed doi rcsb
molecule keywords	Abscisic acid receptor PYL5
total genus	20
structure length	153
sequence length	167
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2013-02-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF10604	Polyketide_cyc2	Polyketide cyclase / dehydrase and lipid transport

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.530.20	Alpha Beta	2-Layer Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4	4jdlA00

2E3RA 5BRLA 3E85A 3PUTA 4FPWA 4JDAA 1XDFA 2KEWA 2N4AA 2FFSA 3NS2A 2PCSA 3P0LA 4XRWA 3H3SA 1H2OA 3KAZA 4REJA 4A81A 5JNNA 2LGHA 5I9JA 4A8GA 2QIMA 1Z94A 4MA6A 2RERA 5JO1A 4BTZA 2A1LA 2LCGA 3P51A 4REIA 1VJHA 5AMWA 1T17A 1LN3A 1ZXFA 3TVQA 1LN2A 5I8FA 2E3NA 5JO2A 2KTEA 4IGVA 4Y31A 3NMPA 3UQHA 4A80A 2I9YA 3NI8A 3RD6A 4MNSA 3TFZA 3NMNA 4JHHA 2Z9YA 3IJTA 2Q3QA 2R55A 2REZA 4A83A 4C94A 4R7KA 3W9RA 1XN5A 3KDHA 1QMRA 3KDIA 2LF2A 4IGWA 2PSOA 5E4MA 1LLTA 4OICA 3JRSA 4LA7A 2LPXA 3NMVA 4WVOA 1T27A 2BK0A 4MAPA 2VNEA 4IGXA 4DS8A 2LDKA 3UJLA 1EM2A 3WG8A 3NMHA 3OTLA 2KF2A 4M9BA 4IHRA 2WQLA 4LG5A 4XRTA 1BV1A 3NJ1A 3IE5A 4JHGA 2K7HA 5E4BA 2VQ5A 1FM4A 3ELIA 4A8UA 3C0VA 4JHIA 4JDLA 2RESA 3CNWA 2LUZA 3KDJA 3Q64A 2N4BA 3H3QA 2M47A 2LEQA 3KB3A 2LIOA 3KAYA 2E3MA 4BKDA 2E3OA 1BTVA 4LGBA 3TVRA 4A85A 3NJ0A 2LAKA 3RT2A 4N3EA 1KCMA 1XFSA 3KL1A 3H3TA 4IH2A 2K5GA 4A8VA 5E46A 1TXCA 3RT0C 3UIDA 4A88A 2L65A 2NS9A 2E3SA 3OJIA 4IH0A 4IGYA 4LGAA 1B6FA 3JRQB 1TW0A 4BK7A 3QSZA 1UW5A 3R6PA 1IFVA 4QIPA 4GY9A 4REHA 4A84A 2FLHA 3TL1A 3NJOA 1LN1A 3F08A 3W9KA 3H3RA 4DSCA 3KLXA 4Q0KA 2L8OA 4DSBA 2NN5A 3ZVUA 3NEGA 3KB0A 3NEFA 4BKCA 2QPVA 3GGNA 3NMTA 2GKDA 3Q6AA 3OQUA 1X53A 3OH8A 4B9RA 3P9VA 2D4RA 3PU2A 2LE1A 3K90A 4PSBA 4C9CA 1ICXA 2IL5A 5C9YA 1FSKA 1XUVA 2E3PA 2E3QA 1XN6A 1JSSA 2MOUA 4M9WA 2Z9ZA 2KCZA 4N0GC 1E09A 4C9IA 4Z3LA 4A86A 3NR4A 3QN1A 2L9PA 2M89A 5E4DA 4RYVA 2EJXA 3K3KA 4A87A 3FO5A 4BK6A 3Q63A
chains in the Genus database with same CATH superfamily

2E3RA 5BRLA 3E85A 3PUTA 4FPWA 4JDAA 1XDFA 2KEWA 2N4AA 2FFSA 3NS2A 2PCSA 3P0LA 4XRWA 3TGOC 3H3SA 1H2OA 3KAZA 4N41A 4REJA 4A81A 5JNNA 2LGHA 5I9JA 3GTEA 4A8GA 2QIMA 1Z94A 4MA6A 2RERA 5JO1A 4QDFB 4BTZA 3GOBA 2A1LA 2LCGA 3P51A 4REIA 1VJHA 3HJFA 5AMWA 1T17A 1LN3A 1ZXFA 3GL0A 3TVQA 1LN2A 5I8FA 2E3NA 5JO2A 2KTEA 4IGVA 4Y31A 3NMPA 3UQHA 4A80A 2I9YA 3NI8A 3RD6A 4MNSA 3TFZA 3NMNA 4JHHA 2Z9YA 2LAFA 3IJTA 2Q3QA 2R55A 2REZA 4A83A 4C94A 4R7KA 3HVRA 3W9RA 1XN5A 3KDHA 1QMRA 3KDIA 2LF2A 4IGWA 2PSOA 5E4MA 1LLTA 4OICA 3JRSA 4LA7A 2LPXA 3NMVA 4WVOA 1T27A 2BK0A 4MAPA 3GTSA 2VNEA 4E6FA 4IGXA 4DS8A 2LDKA 4QDFA 1EM2A 3UJLA 3WG8A 3NMHA 3OTLA 4QCKA 2KF2A 4M9BA 4IHRA 2WQLA 4LG5A 4XRTA 1BV1A 3NJ1A 3IE5A 4JHGA 2K7HA 5E4BA 2VQ5A 1FM4A 3ELIA 4A8UA 4NCBA 3C0VA 4JHIA 4JDLA 4N47A 3F73A 2RESA 3CNWA 2LUZA 3KDJA 3Q64A 4QDCA 2N4BA 3H3QA 2M47A 2LEQA 3GL2A 3HXMA 3KB3A 2LIOA 3KAYA 2E3MA 4BKDA 2E3OA 2ZYLA 1BTVA 4LGBA 4KPYA 3TVRA 4A85A 3NJ0A 2LAKA 2YH6A 3GKEA 4N3EA 3RT2A 1KCMA 1XFSA 3KL1A 3H3TA 4IH2A 3DLHA 3HO1A 2K5GA 4A8VA 5E46A 1TXCA 3DLBA 3RT0C 3UIDA 4A88A 2L65A 2NS9A 2E3SA 3OJIA 4IH0A 4IGYA 4LGAA 1B6FA 3JRQB 1TW0A 4BK7A 3QSZA 1UW5A 3R6PA 1IFVA 4QIPA 3GB4A 4GY9A 4REHA 4A84A 2FLHA 3TL1A 3NJOA 5EKQC 1LN1A 3F08A 3NQNA 4JHYA 3W9KA 3H3RA 4DSCA 4QDDA 3KLXA 4Q0KA 2L8OA 4DSBA 2NN5A 4N76A 3ZVUA 3NEGA 3KB0A 3NEFA 4BKCA 2QPVA 3GGNA 3NMTA 2GKDA 3Q6AA 3OQUA 1X53A 3OH8A 4B9RA 3P9VA 2D4RA 3HK2A 3PU2A 2LE1A 3K90A 4PSBA 4C9CA 1ICXA 2IL5A 5C9YA 1FSKA 1XUVA 2E3PA 2E3QA 1XN6A 1JSSA 2MOUA 4M9WA 2Z9ZA 2KCZA 4N0GC 1E09A 4C9IA 4Z3LA 4A86A 3NR4A 3QN1A 2L9PA 2M89A 5E4DA 4RYVA 2EJXA 3K3KA 4A87A 3HM9A 3FO5A 4BK6A 3Q63A 4NCAA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2E3R A;  5BRL A;  3E85 A;  3PUT A;  4FPW A;  4JDA A;  1XDF A;  2KEW A;  2N4A A;  2FFS A;  3NS2 A;  2PCS A;  3P0L A;  4XRW A;  3H3S A;  1H2O A;  3KAZ A;  4REJ A;  4A81 A;  5JNN A;  2LGH A;  5I9J A;  4A8G A;  2QIM A;  1Z94 A;  4MA6 A;  2RER A;  5JO1 A;  4BTZ A;  2A1L A;  2LCG A;  3P51 A;  4REI A;  1VJH A;  5AMW A;  1T17 A;  1LN3 A;  1ZXF A;  3TVQ A;  1LN2 A;  5I8F A;  2E3N A;  5JO2 A;  2KTE A;  4IGV A;  4Y31 A;  3NMP A;  3UQH A;  4A80 A;  2I9Y A;  3NI8 A;  3RD6 A;  4MNS A;  3TFZ A;  3NMN A;  4JHH A;  2Z9Y A;  3IJT A;  2Q3Q A;  2R55 A;  2REZ A;  4A83 A;  4C94 A;  4R7K A;  3W9R A;  1XN5 A;  3KDH A;  1QMR A;  3KDI A;  2LF2 A;  4IGW A;  2PSO A;  5E4M A;  1LLT A;  4OIC A;  3JRS A;  4LA7 A;  2LPX A;  3NMV A;  4WVO A;  1T27 A;  2BK0 A;  4MAP A;  2VNE A;  4IGX A;  4DS8 A;  2LDK A;  3UJL A;  1EM2 A;  3WG8 A;  3NMH A;  3OTL A;  2KF2 A;  4M9B A;  4IHR A;  2WQL A;  4LG5 A;  4XRT A;  1BV1 A;  3NJ1 A;  3IE5 A;  4JHG A;  2K7H A;  5E4B A;  2VQ5 A;  1FM4 A;  3ELI A;  4A8U A;  3C0V A;  4JHI A;  4JDL A;  2RES A;  3CNW A;  2LUZ A;  3KDJ A;  3Q64 A;  2N4B A;  3H3Q A;  2M47 A;  2LEQ A;  3KB3 A;  2LIO A;  3KAY A;  2E3M A;  4BKD A;  2E3O A;  1BTV A;  4LGB A;  3TVR A;  4A85 A;  3NJ0 A;  2LAK A;  3RT2 A;  4N3E A;  1KCM A;  1XFS A;  3KL1 A;  3H3T A;  4IH2 A;  2K5G A;  4A8V A;  5E46 A;  1TXC A;  3RT0 C;  3UID A;  4A88 A;  2L65 A;  2NS9 A;  2E3S A;  3OJI A;  4IH0 A;  4IGY A;  4LGA A;  1B6F A;  3JRQ B;  1TW0 A;  4BK7 A;  3QSZ A;  1UW5 A;  3R6P A;  1IFV A;  4QIP A;  4GY9 A;  4REH A;  4A84 A;  2FLH A;  3TL1 A;  3NJO A;  1LN1 A;  3F08 A;  3W9K A;  3H3R A;  4DSC A;  3KLX A;  4Q0K A;  2L8O A;  4DSB A;  2NN5 A;  3ZVU A;  3NEG A;  3KB0 A;  3NEF A;  4BKC A;  2QPV A;  3GGN A;  3NMT A;  2GKD A;  3Q6A A;  3OQU A;  1X53 A;  3OH8 A;  4B9R A;  3P9V A;  2D4R A;  3PU2 A;  2LE1 A;  3K90 A;  4PSB A;  4C9C A;  1ICX A;  2IL5 A;  5C9Y A;  1FSK A;  1XUV A;  2E3P A;  2E3Q A;  1XN6 A;  1JSS A;  2MOU A;  4M9W A;  2Z9Z A;  2KCZ A;  4N0G C;  1E09 A;  4C9I A;  4Z3L A;  4A86 A;  3NR4 A;  3QN1 A;  2L9P A;  2M89 A;  5E4D A;  4RYV A;  2EJX A;  3K3K A;  4A87 A;  3FO5 A;  4BK6 A;  3Q63 A; 
#chains in the Genus database with same CATH topology
 2E3R A;  5BRL A;  3E85 A;  3PUT A;  4FPW A;  4JDA A;  1XDF A;  2KEW A;  2N4A A;  2FFS A;  3NS2 A;  2PCS A;  3P0L A;  4XRW A;  3TGO C;  3H3S A;  1H2O A;  3KAZ A;  4N41 A;  4REJ A;  4A81 A;  5JNN A;  2LGH A;  5I9J A;  3GTE A;  4A8G A;  2QIM A;  1Z94 A;  4MA6 A;  2RER A;  5JO1 A;  4QDF B;  4BTZ A;  3GOB A;  2A1L A;  2LCG A;  3P51 A;  4REI A;  1VJH A;  3HJF A;  5AMW A;  1T17 A;  1LN3 A;  1ZXF A;  3GL0 A;  3TVQ A;  1LN2 A;  5I8F A;  2E3N A;  5JO2 A;  2KTE A;  4IGV A;  4Y31 A;  3NMP A;  3UQH A;  4A80 A;  2I9Y A;  3NI8 A;  3RD6 A;  4MNS A;  3TFZ A;  3NMN A;  4JHH A;  2Z9Y A;  2LAF A;  3IJT A;  2Q3Q A;  2R55 A;  2REZ A;  4A83 A;  4C94 A;  4R7K A;  3HVR A;  3W9R A;  1XN5 A;  3KDH A;  1QMR A;  3KDI A;  2LF2 A;  4IGW A;  2PSO A;  5E4M A;  1LLT A;  4OIC A;  3JRS A;  4LA7 A;  2LPX A;  3NMV A;  4WVO A;  1T27 A;  2BK0 A;  4MAP A;  3GTS A;  2VNE A;  4E6F A;  4IGX A;  4DS8 A;  2LDK A;  4QDF A;  1EM2 A;  3UJL A;  3WG8 A;  3NMH A;  3OTL A;  4QCK A;  2KF2 A;  4M9B A;  4IHR A;  2WQL A;  4LG5 A;  4XRT A;  1BV1 A;  3NJ1 A;  3IE5 A;  4JHG A;  2K7H A;  5E4B A;  2VQ5 A;  1FM4 A;  3ELI A;  4A8U A;  4NCB A;  3C0V A;  4JHI A;  4JDL A;  4N47 A;  3F73 A;  2RES A;  3CNW A;  2LUZ A;  3KDJ A;  3Q64 A;  4QDC A;  2N4B A;  3H3Q A;  2M47 A;  2LEQ A;  3GL2 A;  3HXM A;  3KB3 A;  2LIO A;  3KAY A;  2E3M A;  4BKD A;  2E3O A;  2ZYL A;  1BTV A;  4LGB A;  4KPY A;  3TVR A;  4A85 A;  3NJ0 A;  2LAK A;  2YH6 A;  3GKE A;  4N3E A;  3RT2 A;  1KCM A;  1XFS A;  3KL1 A;  3H3T A;  4IH2 A;  3DLH A;  3HO1 A;  2K5G A;  4A8V A;  5E46 A;  1TXC A;  3DLB A;  3RT0 C;  3UID A;  4A88 A;  2L65 A;  2NS9 A;  2E3S A;  3OJI A;  4IH0 A;  4IGY A;  4LGA A;  1B6F A;  3JRQ B;  1TW0 A;  4BK7 A;  3QSZ A;  1UW5 A;  3R6P A;  1IFV A;  4QIP A;  3GB4 A;  4GY9 A;  4REH A;  4A84 A;  2FLH A;  3TL1 A;  3NJO A;  5EKQ C;  1LN1 A;  3F08 A;  3NQN A;  4JHY A;  3W9K A;  3H3R A;  4DSC A;  4QDD A;  3KLX A;  4Q0K A;  2L8O A;  4DSB A;  2NN5 A;  4N76 A;  3ZVU A;  3NEG A;  3KB0 A;  3NEF A;  4BKC A;  2QPV A;  3GGN A;  3NMT A;  2GKD A;  3Q6A A;  3OQU A;  1X53 A;  3OH8 A;  4B9R A;  3P9V A;  2D4R A;  3HK2 A;  3PU2 A;  2LE1 A;  3K90 A;  4PSB A;  4C9C A;  1ICX A;  2IL5 A;  5C9Y A;  1FSK A;  1XUV A;  2E3P A;  2E3Q A;  1XN6 A;  1JSS A;  2MOU A;  4M9W A;  2Z9Z A;  2KCZ A;  4N0G C;  1E09 A;  4C9I A;  4Z3L A;  4A86 A;  3NR4 A;  3QN1 A;  2L9P A;  2M89 A;  5E4D A;  4RYV A;  2EJX A;  3K3K A;  4A87 A;  3HM9 A;  3FO5 A;  4BK6 A;  3Q63 A;  4NCA A; 
#chains in the Genus database with same CATH homology
 2E3R A;  5BRL A;  3E85 A;  3PUT A;  4FPW A;  4JDA A;  1XDF A;  2KEW A;  2N4A A;  2FFS A;  3NS2 A;  2PCS A;  3P0L A;  4XRW A;  3TGO C;  3H3S A;  1H2O A;  3KAZ A;  4N41 A;  4REJ A;  4A81 A;  5JNN A;  2LGH A;  5I9J A;  3GTE A;  4A8G A;  2QIM A;  1Z94 A;  4MA6 A;  2RER A;  5JO1 A;  4QDF B;  4BTZ A;  3GOB A;  2A1L A;  2LCG A;  3P51 A;  4REI A;  1VJH A;  3HJF A;  5AMW A;  1T17 A;  1LN3 A;  1ZXF A;  3GL0 A;  3TVQ A;  1LN2 A;  5I8F A;  2E3N A;  5JO2 A;  2KTE A;  4IGV A;  4Y31 A;  3NMP A;  3UQH A;  4A80 A;  2I9Y A;  3NI8 A;  3RD6 A;  4MNS A;  3TFZ A;  3NMN A;  4JHH A;  2Z9Y A;  2LAF A;  3IJT A;  2Q3Q A;  2R55 A;  2REZ A;  4A83 A;  4C94 A;  4R7K A;  3HVR A;  3W9R A;  1XN5 A;  3KDH A;  1QMR A;  3KDI A;  2LF2 A;  4IGW A;  2PSO A;  5E4M A;  1LLT A;  4OIC A;  3JRS A;  4LA7 A;  2LPX A;  3NMV A;  4WVO A;  1T27 A;  2BK0 A;  4MAP A;  3GTS A;  2VNE A;  4E6F A;  4IGX A;  4DS8 A;  2LDK A;  4QDF A;  1EM2 A;  3UJL A;  3WG8 A;  3NMH A;  3OTL A;  4QCK A;  2KF2 A;  4M9B A;  4IHR A;  2WQL A;  4LG5 A;  4XRT A;  1BV1 A;  3NJ1 A;  3IE5 A;  4JHG A;  2K7H A;  5E4B A;  2VQ5 A;  1FM4 A;  3ELI A;  4A8U A;  4NCB A;  3C0V A;  4JHI A;  4JDL A;  4N47 A;  3F73 A;  2RES A;  3CNW A;  2LUZ A;  3KDJ A;  3Q64 A;  4QDC A;  2N4B A;  3H3Q A;  2M47 A;  2LEQ A;  3GL2 A;  3HXM A;  3KB3 A;  2LIO A;  3KAY A;  2E3M A;  4BKD A;  2E3O A;  2ZYL A;  1BTV A;  4LGB A;  4KPY A;  3TVR A;  4A85 A;  3NJ0 A;  2LAK A;  2YH6 A;  3GKE A;  4N3E A;  3RT2 A;  1KCM A;  1XFS A;  3KL1 A;  3H3T A;  4IH2 A;  3DLH A;  3HO1 A;  2K5G A;  4A8V A;  5E46 A;  1TXC A;  3DLB A;  3RT0 C;  3UID A;  4A88 A;  2L65 A;  2NS9 A;  2E3S A;  3OJI A;  4IH0 A;  4IGY A;  4LGA A;  1B6F A;  3JRQ B;  1TW0 A;  4BK7 A;  3QSZ A;  1UW5 A;  3R6P A;  1IFV A;  4QIP A;  3GB4 A;  4GY9 A;  4REH A;  4A84 A;  2FLH A;  3TL1 A;  3NJO A;  5EKQ C;  1LN1 A;  3F08 A;  3NQN A;  4JHY A;  3W9K A;  3H3R A;  4DSC A;  4QDD A;  3KLX A;  4Q0K A;  2L8O A;  4DSB A;  2NN5 A;  4N76 A;  3ZVU A;  3NEG A;  3KB0 A;  3NEF A;  4BKC A;  2QPV A;  3GGN A;  3NMT A;  2GKD A;  3Q6A A;  3OQU A;  1X53 A;  3OH8 A;  4B9R A;  3P9V A;  2D4R A;  3HK2 A;  3PU2 A;  2LE1 A;  3K90 A;  4PSB A;  4C9C A;  1ICX A;  2IL5 A;  5C9Y A;  1FSK A;  1XUV A;  2E3P A;  2E3Q A;  1XN6 A;  1JSS A;  2MOU A;  4M9W A;  2Z9Z A;  2KCZ A;  4N0G C;  1E09 A;  4C9I A;  4Z3L A;  4A86 A;  3NR4 A;  3QN1 A;  2L9P A;  2M89 A;  5E4D A;  4RYV A;  2EJX A;  3K3K A;  4A87 A;  3HM9 A;  3FO5 A;  4BK6 A;  3Q63 A;  4NCA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4JDLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations