1UOY | Genus

Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	19
sequence length	64
structure length	64
Chain Sequence	DTCGSGYNVDQRRTNSGCKAGNGDRHFCGCDRTGVVECKGGKWTEVQDCGSSSCKGTSNGGATC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 64 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Exudate protein
publication title	Solving the Structure of the Bubble Protein Using the Anomalous Sulfur Signal from Single-Crystal in-House Cu Kalpha Diffraction Data Only pubmed doi rcsb
molecule keywords	BUBBLE PROTEIN
total genus	19
structure length	64
sequence length	64
ec nomenclature
pdb deposition date	2003-09-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09227	DUF1962	Domain of unknown function (DUF1962)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.130.50	Mainly Beta	Roll	Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4	Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4	1uoyA01

1UOYA
chains in the Genus database with same CATH superfamily

3LWOA 2Z0TA 3LJCA 1S04A 3LWVA 3M6UA 1WXXA 3HAXA 2CX0A 3IUWA 1SQWA 2B78A 1IT8A 3M6WA 1WK2A 1WXWA 2AUSA 1R3FA 2Q07A 1UOYA 2DP9A 1ZL3A 1T5YA 2ANEA 3C0KA 3LDFA 2HVYA 1SGVA 1Q7HA 2CWWA 3M65A 3D79A 3LWRA 1ZE2A 3LWPA 4CI3B 2J5TA 4Q1TA 2E5OA 3U28A 3M6XA 1ZBOA 1IT7A 2RFKA 3M6VA 1XNEA 3HJWA 2J5VA 3LWQA 2P38A 2AB4A 2APOA 2CX1A 3MQKA 3UAIA 2KKUA 3ZV0C 1ZE1A 4TZ4C 3VSEA 4CI2B 4CI1B 1J2BA 1IQ8A 1ZS7A 3M4XA 2FRXA 2EY4A 1TE7A 3HJYA 2AS0A 1R3EA 1K8WA 4DMGA
chains in the Genus database with same CATH topology

3LWOA 3LWVA 3M6UA 3HAXA 3M6WA 3HJYA 2AUSA 1UOYA 2HVYA 3LWRA 3LWPA 3U28A 3M6XA 2RFKA 3M6VA 3HJWA 3LWQA 2APOA 3MQKA 3ZV0C 3M4XA 2FRXA 2EY4A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1UOY A; 
#chains in the Genus database with same CATH topology
 3LWO A;  2Z0T A;  3LJC A;  1S04 A;  3LWV A;  3M6U A;  1WXX A;  3HAX A;  2CX0 A;  3IUW A;  1SQW A;  2B78 A;  1IT8 A;  3M6W A;  1WK2 A;  1WXW A;  2AUS A;  1R3F A;  2Q07 A;  1UOY A;  2DP9 A;  1ZL3 A;  1T5Y A;  2ANE A;  3C0K A;  3LDF A;  2HVY A;  1SGV A;  1Q7H A;  2CWW A;  3M65 A;  3D79 A;  3LWR A;  1ZE2 A;  3LWP A;  4CI3 B;  2J5T A;  4Q1T A;  2E5O A;  3U28 A;  3M6X A;  1ZBO A;  1IT7 A;  2RFK A;  3M6V A;  1XNE A;  3HJW A;  2J5V A;  3LWQ A;  2P38 A;  2AB4 A;  2APO A;  2CX1 A;  3MQK A;  3UAI A;  2KKU A;  3ZV0 C;  1ZE1 A;  4TZ4 C;  3VSE A;  4CI2 B;  4CI1 B;  1J2B A;  1IQ8 A;  1ZS7 A;  3M4X A;  2FRX A;  2EY4 A;  1TE7 A;  3HJY A;  2AS0 A;  1R3E A;  1K8W A;  4DMG A; 
#chains in the Genus database with same CATH homology
 3LWO A;  3LWV A;  3M6U A;  3HAX A;  3M6W A;  3HJY A;  2AUS A;  1UOY A;  2HVY A;  3LWR A;  3LWP A;  3U28 A;  3M6X A;  2RFK A;  3M6V A;  3HJW A;  3LWQ A;  2APO A;  3MQK A;  3ZV0 C;  3M4X A;  2FRX A;  2EY4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1UOYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations