1TE7A

Solution nmr structure of protein yqfb from escherichia coli. northeast structural genomics consortium target et99
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
103
structure length
103
Chain Sequence
MQPNDITFFQRFQDDILAGRKTITIRDESESHFKTGDVLRVGRFEDDGYFCTIEVTATSTVTLDTLTEKHAEQENMTLTELKKVIADIYPGQTQFYVIEFKCL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title G-Matrix Fourier Transform NOESY-Based Protocol for High-Quality Protein Structure Determination
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Escherichia coli
molecule keywords Hypothetical UPF0267 protein yqfB
total genus 17
structure length 103
sequence length 103
ec nomenclature
pdb deposition date 2004-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04266 ASCH ASCH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.30 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Hypothetical protein. 1te7A00
1S04A 2KKUA 2Z0TA 1XNEA 1TE7A 2E5OA 1WK2A 2DP9A 3IUWA
chains in the Genus database with same CATH superfamily
1S04A 2ANEA 3HJYA 1IT7A 1SQWA 1XNEA 1T5YA 2CX0A 2E5OA 2AUSA 2FRXA 1ZE1A 2J5TA 2B78A 3M6WA 2KKUA 3IUWA 2DP9A 1R3EA 2AS0A 2J5VA 3M6UA 4Q1TA 3VSEA 2RFKA 3M6XA 4TZ4C 3LWOA 3D79A 1IT8A 1Q7HA 1UOYA 2CX1A 2Q07A 3M65A 3M4XA 3MQKA 1ZE2A 3LWVA 1IQ8A 1WXXA 4CI2B 4DMGA 4CI1B 3LDFA 1ZBOA 1K8WA 3LWPA 2EY4A 2Z0TA 3U28A 1J2BA 3HJWA 3ZV0C 1WXWA 3LWQA 3UAIA 3M6VA 4CI3B 2P38A 3C0KA 1SGVA 2APOA 1ZS7A 1ZL3A 2AB4A 1TE7A 1R3FA 3HAXA 1WK2A 3LJCA 2HVYA 3LWRA 2CWWA
chains in the Genus database with same CATH topology
1S04A 2KKUA 2Z0TA 1XNEA 1TE7A 1WHZA 2E5OA 4C26A 1WK2A 2DP9A 3IUWA 4P78C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S04 A;  2KKU A;  2Z0T A;  1XNE A;  1TE7 A;  2E5O A;  1WK2 A;  2DP9 A;  3IUW A; 
#chains in the Genus database with same CATH topology
 1S04 A;  2ANE A;  3HJY A;  1IT7 A;  1SQW A;  1XNE A;  1T5Y A;  2CX0 A;  2E5O A;  2AUS A;  2FRX A;  1ZE1 A;  2J5T A;  2B78 A;  3M6W A;  2KKU A;  3IUW A;  2DP9 A;  1R3E A;  2AS0 A;  2J5V A;  3M6U A;  4Q1T A;  3VSE A;  2RFK A;  3M6X A;  4TZ4 C;  3LWO A;  3D79 A;  1IT8 A;  1Q7H A;  1UOY A;  2CX1 A;  2Q07 A;  3M65 A;  3M4X A;  3MQK A;  1ZE2 A;  3LWV A;  1IQ8 A;  1WXX A;  4CI2 B;  4DMG A;  4CI1 B;  3LDF A;  1ZBO A;  1K8W A;  3LWP A;  2EY4 A;  2Z0T A;  3U28 A;  1J2B A;  3HJW A;  3ZV0 C;  1WXW A;  3LWQ A;  3UAI A;  3M6V A;  4CI3 B;  2P38 A;  3C0K A;  1SGV A;  2APO A;  1ZS7 A;  1ZL3 A;  2AB4 A;  1TE7 A;  1R3F A;  3HAX A;  1WK2 A;  3LJC A;  2HVY A;  3LWR A;  2CWW A; 
#chains in the Genus database with same CATH homology
 1S04 A;  2KKU A;  2Z0T A;  1XNE A;  1TE7 A;  1WHZ A;  2E5O A;  4C26 A;  1WK2 A;  2DP9 A;  3IUW A;  4P78 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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