2DP9A

Crystal structure of conserved hypothetical protein ttha0113 from thermus thermophilus hb8
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
124
structure length
124
Chain Sequence
MDYMERPKLGLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFSVEELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPGRVMFVDLSEVRW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Thermus thermophilus
publication title Crystal Structure of Conserved Hypothetical Protein TTHA0113 from Thermus thermophilus HB8
rcsb
molecule keywords Hypothetical protein TTHA0113
total genus 30
structure length 124
sequence length 124
ec nomenclature
pdb deposition date 2006-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04266 ASCH ASCH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.30 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Hypothetical protein. 2dp9A01
2KKUA 1TE7A 3IUWA 1WK2A 1S04A 2Z0TA 2DP9A 2E5OA 1XNEA
chains in the Genus database with same CATH superfamily
2APOA 2AUSA 1TE7A 1WXWA 2Q07A 3VSEA 1S04A 3C0KA 2AB4A 2AS0A 2CX0A 2DP9A 3M6XA 1Q7HA 1IQ8A 1R3FA 2KKUA 4CI2B 3LWVA 1R3EA 3HAXA 1WK2A 2J5VA 3M6WA 3LWQA 2ANEA 2P38A 1UOYA 3D79A 3HJWA 3LJCA 1ZBOA 4CI3B 2EY4A 1ZS7A 3U28A 1SQWA 2J5TA 1WXXA 3M65A 3LWOA 4CI1B 1IT7A 3LWRA 1J2BA 2CX1A 2HVYA 4TZ4C 4Q1TA 2RFKA 1ZE2A 1K8WA 2E5OA 2CWWA 3M4XA 1T5YA 3M6UA 3IUWA 3ZV0C 1SGVA 1ZE1A 3UAIA 2FRXA 3MQKA 2B78A 1IT8A 3M6VA 2Z0TA 3LWPA 1ZL3A 4DMGA 3LDFA 3HJYA 1XNEA
chains in the Genus database with same CATH topology
2KKUA 4P78C 1TE7A 3IUWA 1XNEA 1S04A 1WHZA 2Z0TA 2DP9A 4C26A 2E5OA 1WK2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KKU A;  1TE7 A;  3IUW A;  1WK2 A;  1S04 A;  2Z0T A;  2DP9 A;  2E5O A;  1XNE A; 
#chains in the Genus database with same CATH topology
 2APO A;  2AUS A;  1TE7 A;  1WXW A;  2Q07 A;  3VSE A;  1S04 A;  3C0K A;  2AB4 A;  2AS0 A;  2CX0 A;  2DP9 A;  3M6X A;  1Q7H A;  1IQ8 A;  1R3F A;  2KKU A;  4CI2 B;  3LWV A;  1R3E A;  3HAX A;  1WK2 A;  2J5V A;  3M6W A;  3LWQ A;  2ANE A;  2P38 A;  1UOY A;  3D79 A;  3HJW A;  3LJC A;  1ZBO A;  4CI3 B;  2EY4 A;  1ZS7 A;  3U28 A;  1SQW A;  2J5T A;  1WXX A;  3M65 A;  3LWO A;  4CI1 B;  1IT7 A;  3LWR A;  1J2B A;  2CX1 A;  2HVY A;  4TZ4 C;  4Q1T A;  2RFK A;  1ZE2 A;  1K8W A;  2E5O A;  2CWW A;  3M4X A;  1T5Y A;  3M6U A;  3IUW A;  3ZV0 C;  1SGV A;  1ZE1 A;  3UAI A;  2FRX A;  3MQK A;  2B78 A;  1IT8 A;  3M6V A;  2Z0T A;  3LWP A;  1ZL3 A;  4DMG A;  3LDF A;  3HJY A;  1XNE A; 
#chains in the Genus database with same CATH homology
 2KKU A;  4P78 C;  1TE7 A;  3IUW A;  1XNE A;  1S04 A;  1WHZ A;  2Z0T A;  2DP9 A;  4C26 A;  2E5O A;  1WK2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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