1UOYA

The bubble protein from penicillium brevicompactum dierckx exudate.
Total Genus 19
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
64
structure length
64
Chain Sequence
DTCGSGYNVDQRRTNSGCKAGNGDRHFCGCDRTGVVECKGGKWTEVQDCGSSSCKGTSNGGATC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Exudate protein
publication title Solving the Structure of the Bubble Protein Using the Anomalous Sulfur Signal from Single-Crystal in-House Cu Kalpha Diffraction Data Only
pubmed doi rcsb
molecule keywords BUBBLE PROTEIN
total genus 19
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 2003-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09227 DUF1962 Domain of unknown function (DUF1962)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.50 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 1uoyA01
1UOYA
chains in the Genus database with same CATH superfamily
1ZE1A 4CI3B 3M6XA 2ANEA 2APOA 2Q07A 3UAIA 2CX0A 3LWQA 3LWRA 1ZE2A 1UOYA 1ZL3A 2KKUA 2FRXA 1K8WA 1ZS7A 1Q7HA 2B78A 2J5VA 3D79A 3IUWA 3ZV0C 1TE7A 3M6VA 2AS0A 2DP9A 3M4XA 1T5YA 2J5TA 4CI1B 1XNEA 3LWOA 3LWPA 1R3FA 2AB4A 3LWVA 1IT7A 3M65A 4Q1TA 3M6WA 1J2BA 2EY4A 3HJWA 1ZBOA 2Z0TA 2CWWA 4TZ4C 2P38A 3M6UA 1R3EA 1WXWA 2AUSA 3LJCA 2RFKA 3HJYA 3HAXA 1IT8A 4CI2B 4DMGA 3MQKA 2E5OA 1IQ8A 1S04A 1SGVA 3C0KA 3LDFA 3U28A 1WK2A 1WXXA 1SQWA 3VSEA 2HVYA 2CX1A
chains in the Genus database with same CATH topology
3M6XA 2APOA 3LWQA 3LWRA 1UOYA 2FRXA 3ZV0C 3M6VA 3M4XA 3LWPA 3LWOA 3LWVA 3M6WA 2EY4A 3HJWA 3M6UA 2AUSA 2RFKA 3HJYA 3HAXA 3MQKA 3U28A 2HVYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UOY A; 
#chains in the Genus database with same CATH topology
 1ZE1 A;  4CI3 B;  3M6X A;  2ANE A;  2APO A;  2Q07 A;  3UAI A;  2CX0 A;  3LWQ A;  3LWR A;  1ZE2 A;  1UOY A;  1ZL3 A;  2KKU A;  2FRX A;  1K8W A;  1ZS7 A;  1Q7H A;  2B78 A;  2J5V A;  3D79 A;  3IUW A;  3ZV0 C;  1TE7 A;  3M6V A;  2AS0 A;  2DP9 A;  3M4X A;  1T5Y A;  2J5T A;  4CI1 B;  1XNE A;  3LWO A;  3LWP A;  1R3F A;  2AB4 A;  3LWV A;  1IT7 A;  3M65 A;  4Q1T A;  3M6W A;  1J2B A;  2EY4 A;  3HJW A;  1ZBO A;  2Z0T A;  2CWW A;  4TZ4 C;  2P38 A;  3M6U A;  1R3E A;  1WXW A;  2AUS A;  3LJC A;  2RFK A;  3HJY A;  3HAX A;  1IT8 A;  4CI2 B;  4DMG A;  3MQK A;  2E5O A;  1IQ8 A;  1S04 A;  1SGV A;  3C0K A;  3LDF A;  3U28 A;  1WK2 A;  1WXX A;  1SQW A;  3VSE A;  2HVY A;  2CX1 A; 
#chains in the Genus database with same CATH homology
 3M6X A;  2APO A;  3LWQ A;  3LWR A;  1UOY A;  2FRX A;  3ZV0 C;  3M6V A;  3M4X A;  3LWP A;  3LWO A;  3LWV A;  3M6W A;  2EY4 A;  3HJW A;  3M6U A;  2AUS A;  2RFK A;  3HJY A;  3HAX A;  3MQK A;  3U28 A;  2HVY A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...