1UOYA

The bubble protein from penicillium brevicompactum dierckx exudate.
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
64
structure length
64
Chain Sequence
b'DTCGSGYNVDQRRTNSGCKAGNGDRHFCGCDRTGVVECKGGKWTEVQDCGSSSCKGTSNGGATC'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solving the Structure of the Bubble Protein Using the Anomalous Sulfur Signal from Single-Crystal in-House Cu Kalpha Diffraction Data Only
pubmed doi rcsb
molecule keywords BUBBLE PROTEIN
molecule tags Exudate protein
total genus 19
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 2003-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09227 DUF1962 Domain of unknown function (DUF1962)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.50 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 1uoyA01
1UOYA
chains in the Genus database with same CATH superfamily
1ZBOA 1SGVA 3LWQA 1R3FA 3D79A 3M6UA 1Q7HA 4DMGA 2J5TA 1ZL3A 2APOA 3LWVA 1S04A 1UOYA 2KKUA 3M6WA 4CI1B 2AB4A 1J2BA 3VSEA 3LDFA 4TZ4C 2J5VA 1WXXA 1XNEA 3ZV0C 2CWWA 3C0KA 2AUSA 1WK2A 3M6XA 3HJWA 1TE7A 1IQ8A 2EY4A 2Z0TA 1ZS7A 3HJYA 3LWRA 1IT7A 2CX0A 2P38A 2HVYA 3M4XA 1K8WA 4CI3B 3LWOA 2AS0A 1IT8A 1R3EA 4Q1TA 3LWPA 3HAXA 2DP9A 2CX1A 2RFKA 3MQKA 3U28A 3IUWA 3UAIA 3M6VA 1T5YA 2ANEA 2Q07A 4CI2B 1SQWA 2FRXA 3M65A 3LJCA 2E5OA 1ZE2A 2B78A 1WXWA 1ZE1A
chains in the Genus database with same CATH topology
3LWQA 3M6UA 2APOA 3LWVA 1UOYA 3M6WA 3ZV0C 2AUSA 3HJWA 3M6XA 2EY4A 3HJYA 3LWRA 2HVYA 3M4XA 3LWOA 3LWPA 3HAXA 2RFKA 3MQKA 3U28A 3M6VA 2FRXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UOY A; 
#chains in the Genus database with same CATH topology
 1ZBO A;  1SGV A;  3LWQ A;  1R3F A;  3D79 A;  3M6U A;  1Q7H A;  4DMG A;  2J5T A;  1ZL3 A;  2APO A;  3LWV A;  1S04 A;  1UOY A;  2KKU A;  3M6W A;  4CI1 B;  2AB4 A;  1J2B A;  3VSE A;  3LDF A;  4TZ4 C;  2J5V A;  1WXX A;  1XNE A;  3ZV0 C;  2CWW A;  3C0K A;  2AUS A;  1WK2 A;  3M6X A;  3HJW A;  1TE7 A;  1IQ8 A;  2EY4 A;  2Z0T A;  1ZS7 A;  3HJY A;  3LWR A;  1IT7 A;  2CX0 A;  2P38 A;  2HVY A;  3M4X A;  1K8W A;  4CI3 B;  3LWO A;  2AS0 A;  1IT8 A;  1R3E A;  4Q1T A;  3LWP A;  3HAX A;  2DP9 A;  2CX1 A;  2RFK A;  3MQK A;  3U28 A;  3IUW A;  3UAI A;  3M6V A;  1T5Y A;  2ANE A;  2Q07 A;  4CI2 B;  1SQW A;  2FRX A;  3M65 A;  3LJC A;  2E5O A;  1ZE2 A;  2B78 A;  1WXW A;  1ZE1 A; 
#chains in the Genus database with same CATH homology
 3LWQ A;  3M6U A;  2APO A;  3LWV A;  1UOY A;  3M6W A;  3ZV0 C;  2AUS A;  3HJW A;  3M6X A;  2EY4 A;  3HJY A;  3LWR A;  2HVY A;  3M4X A;  3LWO A;  3LWP A;  3HAX A;  2RFK A;  3MQK A;  3U28 A;  3M6V A;  2FRX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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