2J5VA

Glutamate 5-kinase from escherichia coli complexed with glutamyl-5-phosphate and pyroglutamic acid
Total Genus 116
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
sequence length
365
structure length
323
Chain Sequence
b'DSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMITRE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords GLUTAMATE 5-KINASE
publication title A Novel Two-Domain Architecture within the Amino Acid Kinase Enzyme Family Revealed by the Crystal Structure of Escherichia Coli Glutamate 5-Kinase.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Transferase
total genus 116
structure length 323
sequence length 365
chains with identical sequence B
ec nomenclature ec 2.7.2.11: Glutamate 5-kinase.
pdb deposition date 2006-09-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
A PF01472 PUA PUA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 2j5vA02
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j5vA01
2BNDA 4JZ9A 2J4LA 3C0KA 2OGXB 2HMFA 1R3EA 3C1MA 1R3FA 3QVFA 4I49A 2B78A 2BRXA 2IJ9A 2V4YA 4AB7A 2JI5A 3S6KA 4NDOA 4A7WA 1YBDA 3LL9A 2P38A 2VA1A 4USJA 2J0WA 3U6UA 3KZFA 2AP9A 2Q07A 3S6GA 3ZZFA 1SGVA 3EK6A 2R8VA 4A7XA 3ZZHA 3QUOA 1IQ8A 2E9YA 2BTYA 3EK5A 4JZ8A 2V5HA 2CX0A 3AB4A 3LKKA 4NDQA 2J4KA 2BUFA 4NDQB 2A1FA 1IT8A 2RD5A 2W21A 3QVHA 1WXXA 4NDOB 3AB2A 3ZZIA 1E19A 4JZ7A 4Q1TA 2AS0A 4KZTA 2WE5A 3D79A 4NDPA 1K8WA 3UAIA 2J5TA 2J5VA 3L86A 4NDPB 1ZS7A 1WXWA 1OH9A 2BMUA 3WWMA 3C20A 3C1NA 1OHAA 2CWWA 3LL5A 2J0XA 2BNEA 4NDRA 2J4JA 2AKOA 3D41A 2CX1A 4NDRB 4AXSA 2WXBA 1OHBA 2OGXA 3QUNA 3QURA 2AB4A 1ZE1A 2BRIA 3AAWA 3TVIA 1GSJA 2X2WA 3S6HA 1T5YA 4OLCA 3LDFA 3K52A 1ZE2A 1Z9DA 4DMGA 1J2BA 3K56A 3T7BA 3VSEA 1ZL3A 3D2PA 3ZZGA 3NWYA 3D2MA 1IT7A 2JJ4A 1Q7HA 2WE4A 1SQWA 3WWNA 3D40A 3L76A 1GS5A 2JJXA 4F6TA 2CDQA 2R98A 3B8GA 3K4OA 4F6TB 1B7BA 3K4YA 2BNFA
chains in the Genus database with same CATH superfamily
2BNDA 4JZ9A 2AUSA 2J4LA 3C0KA 2OGXB 2HMFA 1TE7A 2KKUA 1R3EA 3C1MA 1R3FA 3QVFA 4I49A 3LWRA 2APOA 4TZ4C 2B78A 2BRXA 2IJ9A 2V4YA 4AB7A 2JI5A 3S6KA 4CI1B 4NDOA 3LWVA 3LWOA 4A7WA 3M6VA 2HVYA 1YBDA 3LL9A 2P38A 2VA1A 4USJA 2J0WA 3U6UA 3KZFA 2AP9A 2Q07A 3S6GA 3ZZFA 1SGVA 3EK6A 2R8VA 4A7XA 2RFKA 4CI2B 2BNFA 3ZZHA 3QUOA 1IQ8A 2E9YA 2BTYA 3EK5A 4JZ8A 2V5HA 2EY4A 3LWQA 2CX0A 3AB4A 3LKKA 4NDQA 1XNEA 2J4KA 2BUFA 4NDQB 2A1FA 1IT8A 2RD5A 2W21A 3QVHA 1WXXA 4NDOB 3AB2A 3ZZIA 1E19A 1WK2A 4JZ7A 4Q1TA 3HJWA 2AS0A 4KZTA 2WE5A 3M6XA 3D79A 2DP9A 4NDPA 3IUWA 1K8WA 3UAIA 2J5TA 2J5VA 3L86A 4NDPB 1ZS7A 1WXWA 1OH9A 2BMUA 3WWMA 3C20A 3C1NA 3LJCA 1OHAA 2CWWA 3M6WA 3LL5A 1S04A 2J0XA 2E5OA 3U28A 2BNEA 4NDRA 3ZV0C 2J4JA 2AKOA 3D41A 2CX1A 4CI3B 4NDRB 4AXSA 2WXBA 3M6UA 2OGXA 3QUNA 3QURA 2AB4A 1ZE1A 2BRIA 1ZBOA 3LWPA 3AAWA 3M65A 1GSJA 3TVIA 2X2WA 3S6HA 1T5YA 4OLCA 3LDFA 3M4XA 3K52A 1ZE2A 1Z9DA 4DMGA 1J2BA 2FRXA 3K56A 3T7BA 1UOYA 3VSEA 1ZL3A 3D2PA 3HJYA 3ZZGA 3NWYA 3D2MA 3HAXA 1IT7A 2JJ4A 1Q7HA 2WE4A 1SQWA 3WWNA 3D40A 3L76A 1GS5A 2JJXA 4F6TA 2Z0TA 2ANEA 2CDQA 2R98A 3B8GA 3K4OA 3MQKA 4F6TB 1B7BA 3K4YA 1OHBA
chains in the Genus database with same CATH topology
2BNDA 4JZ9A 2J4LA 3C0KA 2OGXB 2HMFA 1R3EA 3C1MA 1R3FA 3QVFA 4I49A 2B78A 2BRXA 2IJ9A 2V4YA 4AB7A 2JI5A 3S6KA 4NDOA 4A7WA 1YBDA 3LL9A 2P38A 2VA1A 4USJA 2J0WA 3U6UA 3KZFA 2AP9A 2Q07A 3S6GA 3ZZFA 1SGVA 3EK6A 2R8VA 4A7XA 3ZZHA 3QUOA 1IQ8A 2E9YA 2BTYA 3EK5A 4JZ8A 2V5HA 2CX0A 3AB4A 3LKKA 4NDQA 2J4KA 2BUFA 4NDQB 2A1FA 1IT8A 2RD5A 2W21A 3QVHA 1WXXA 4NDOB 3AB2A 3ZZIA 1E19A 4JZ7A 4Q1TA 2AS0A 4KZTA 2WE5A 3D79A 4NDPA 1K8WA 3UAIA 2J5TA 2J5VA 3L86A 4NDPB 1ZS7A 1WXWA 1OH9A 2BMUA 3WWMA 3C20A 3C1NA 1OHAA 2CWWA 3LL5A 2J0XA 2BNEA 4NDRA 2J4JA 2AKOA 3D41A 2CX1A 4NDRB 4AXSA 2WXBA 1OHBA 2OGXA 3QUNA 3QURA 2AB4A 1ZE1A 2BRIA 3AAWA 3TVIA 1GSJA 2X2WA 3S6HA 1T5YA 4OLCA 3LDFA 3K52A 1ZE2A 1Z9DA 4DMGA 1J2BA 3K56A 3T7BA 3VSEA 1ZL3A 3D2PA 3ZZGA 3NWYA 3D2MA 1IT7A 2JJ4A 1Q7HA 2WE4A 1SQWA 3WWNA 3D40A 3L76A 1GS5A 2JJXA 4F6TA 2CDQA 2R98A 3B8GA 3K4OA 4F6TB 1B7BA 3K4YA 2BNFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BND A;  4JZ9 A;  2J4L A;  3C0K A;  2OGX B;  2HMF A;  1R3E A;  3C1M A;  1R3F A;  3QVF A;  4I49 A;  2B78 A;  2BRX A;  2IJ9 A;  2V4Y A;  4AB7 A;  2JI5 A;  3S6K A;  4NDO A;  4A7W A;  1YBD A;  3LL9 A;  2P38 A;  2VA1 A;  4USJ A;  2J0W A;  3U6U A;  3KZF A;  2AP9 A;  2Q07 A;  3S6G A;  3ZZF A;  1SGV A;  3EK6 A;  2R8V A;  4A7X A;  3ZZH A;  3QUO A;  1IQ8 A;  2E9Y A;  2BTY A;  3EK5 A;  4JZ8 A;  2V5H A;  2CX0 A;  3AB4 A;  3LKK A;  4NDQ A;  2J4K A;  2BUF A;  4NDQ B;  2A1F A;  1IT8 A;  2RD5 A;  2W21 A;  3QVH A;  1WXX A;  4NDO B;  3AB2 A;  3ZZI A;  1E19 A;  4JZ7 A;  4Q1T A;  2AS0 A;  4KZT A;  2WE5 A;  3D79 A;  4NDP A;  1K8W A;  3UAI A;  2J5T A;  2J5V A;  3L86 A;  4NDP B;  1ZS7 A;  1WXW A;  1OH9 A;  2BMU A;  3WWM A;  3C20 A;  3C1N A;  1OHA A;  2CWW A;  3LL5 A;  2J0X A;  2BNE A;  4NDR A;  2J4J A;  2AKO A;  3D41 A;  2CX1 A;  4NDR B;  4AXS A;  2WXB A;  1OHB A;  2OGX A;  3QUN A;  3QUR A;  2AB4 A;  1ZE1 A;  2BRI A;  3AAW A;  3TVI A;  1GSJ A;  2X2W A;  3S6H A;  1T5Y A;  4OLC A;  3LDF A;  3K52 A;  1ZE2 A;  1Z9D A;  4DMG A;  1J2B A;  3K56 A;  3T7B A;  3VSE A;  1ZL3 A;  3D2P A;  3ZZG A;  3NWY A;  3D2M A;  1IT7 A;  2JJ4 A;  1Q7H A;  2WE4 A;  1SQW A;  3WWN A;  3D40 A;  3L76 A;  1GS5 A;  2JJX A;  4F6T A;  2CDQ A;  2R98 A;  3B8G A;  3K4O A;  4F6T B;  1B7B A;  3K4Y A;  2BNF A; 
#chains in the Genus database with same CATH topology
 2BND A;  4JZ9 A;  2AUS A;  2J4L A;  3C0K A;  2OGX B;  2HMF A;  1TE7 A;  2KKU A;  1R3E A;  3C1M A;  1R3F A;  3QVF A;  4I49 A;  3LWR A;  2APO A;  4TZ4 C;  2B78 A;  2BRX A;  2IJ9 A;  2V4Y A;  4AB7 A;  2JI5 A;  3S6K A;  4CI1 B;  4NDO A;  3LWV A;  3LWO A;  4A7W A;  3M6V A;  2HVY A;  1YBD A;  3LL9 A;  2P38 A;  2VA1 A;  4USJ A;  2J0W A;  3U6U A;  3KZF A;  2AP9 A;  2Q07 A;  3S6G A;  3ZZF A;  1SGV A;  3EK6 A;  2R8V A;  4A7X A;  2RFK A;  4CI2 B;  2BNF A;  3ZZH A;  3QUO A;  1IQ8 A;  2E9Y A;  2BTY A;  3EK5 A;  4JZ8 A;  2V5H A;  2EY4 A;  3LWQ A;  2CX0 A;  3AB4 A;  3LKK A;  4NDQ A;  1XNE A;  2J4K A;  2BUF A;  4NDQ B;  2A1F A;  1IT8 A;  2RD5 A;  2W21 A;  3QVH A;  1WXX A;  4NDO B;  3AB2 A;  3ZZI A;  1E19 A;  1WK2 A;  4JZ7 A;  4Q1T A;  3HJW A;  2AS0 A;  4KZT A;  2WE5 A;  3M6X A;  3D79 A;  2DP9 A;  4NDP A;  3IUW A;  1K8W A;  3UAI A;  2J5T A;  2J5V A;  3L86 A;  4NDP B;  1ZS7 A;  1WXW A;  1OH9 A;  2BMU A;  3WWM A;  3C20 A;  3C1N A;  3LJC A;  1OHA A;  2CWW A;  3M6W A;  3LL5 A;  1S04 A;  2J0X A;  2E5O A;  3U28 A;  2BNE A;  4NDR A;  3ZV0 C;  2J4J A;  2AKO A;  3D41 A;  2CX1 A;  4CI3 B;  4NDR B;  4AXS A;  2WXB A;  3M6U A;  2OGX A;  3QUN A;  3QUR A;  2AB4 A;  1ZE1 A;  2BRI A;  1ZBO A;  3LWP A;  3AAW A;  3M65 A;  1GSJ A;  3TVI A;  2X2W A;  3S6H A;  1T5Y A;  4OLC A;  3LDF A;  3M4X A;  3K52 A;  1ZE2 A;  1Z9D A;  4DMG A;  1J2B A;  2FRX A;  3K56 A;  3T7B A;  1UOY A;  3VSE A;  1ZL3 A;  3D2P A;  3HJY A;  3ZZG A;  3NWY A;  3D2M A;  3HAX A;  1IT7 A;  2JJ4 A;  1Q7H A;  2WE4 A;  1SQW A;  3WWN A;  3D40 A;  3L76 A;  1GS5 A;  2JJX A;  4F6T A;  2Z0T A;  2ANE A;  2CDQ A;  2R98 A;  3B8G A;  3K4O A;  3MQK A;  4F6T B;  1B7B A;  3K4Y A;  1OHB A; 
#chains in the Genus database with same CATH homology
 2BND A;  4JZ9 A;  2J4L A;  3C0K A;  2OGX B;  2HMF A;  1R3E A;  3C1M A;  1R3F A;  3QVF A;  4I49 A;  2B78 A;  2BRX A;  2IJ9 A;  2V4Y A;  4AB7 A;  2JI5 A;  3S6K A;  4NDO A;  4A7W A;  1YBD A;  3LL9 A;  2P38 A;  2VA1 A;  4USJ A;  2J0W A;  3U6U A;  3KZF A;  2AP9 A;  2Q07 A;  3S6G A;  3ZZF A;  1SGV A;  3EK6 A;  2R8V A;  4A7X A;  3ZZH A;  3QUO A;  1IQ8 A;  2E9Y A;  2BTY A;  3EK5 A;  4JZ8 A;  2V5H A;  2CX0 A;  3AB4 A;  3LKK A;  4NDQ A;  2J4K A;  2BUF A;  4NDQ B;  2A1F A;  1IT8 A;  2RD5 A;  2W21 A;  3QVH A;  1WXX A;  4NDO B;  3AB2 A;  3ZZI A;  1E19 A;  4JZ7 A;  4Q1T A;  2AS0 A;  4KZT A;  2WE5 A;  3D79 A;  4NDP A;  1K8W A;  3UAI A;  2J5T A;  2J5V A;  3L86 A;  4NDP B;  1ZS7 A;  1WXW A;  1OH9 A;  2BMU A;  3WWM A;  3C20 A;  3C1N A;  1OHA A;  2CWW A;  3LL5 A;  2J0X A;  2BNE A;  4NDR A;  2J4J A;  2AKO A;  3D41 A;  2CX1 A;  4NDR B;  4AXS A;  2WXB A;  1OHB A;  2OGX A;  3QUN A;  3QUR A;  2AB4 A;  1ZE1 A;  2BRI A;  3AAW A;  3TVI A;  1GSJ A;  2X2W A;  3S6H A;  1T5Y A;  4OLC A;  3LDF A;  3K52 A;  1ZE2 A;  1Z9D A;  4DMG A;  1J2B A;  3K56 A;  3T7B A;  3VSE A;  1ZL3 A;  3D2P A;  3ZZG A;  3NWY A;  3D2M A;  1IT7 A;  2JJ4 A;  1Q7H A;  2WE4 A;  1SQW A;  3WWN A;  3D40 A;  3L76 A;  1GS5 A;  2JJX A;  4F6T A;  2CDQ A;  2R98 A;  3B8G A;  3K4O A;  4F6T B;  1B7B A;  3K4Y A;  2BNF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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