2J5VA

Glutamate 5-kinase from escherichia coli complexed with glutamyl-5-phosphate and pyroglutamic acid
Total Genus 116
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
sequence length
365
structure length
323
Chain Sequence
DSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMITRE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords GLUTAMATE 5-KINASE
publication title A Novel Two-Domain Architecture within the Amino Acid Kinase Enzyme Family Revealed by the Crystal Structure of Escherichia Coli Glutamate 5-Kinase.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Transferase
total genus 116
structure length 323
sequence length 365
chains with identical sequence B
ec nomenclature ec 2.7.2.11: Glutamate 5-kinase.
pdb deposition date 2006-09-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
A PF01472 PUA PUA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 2j5vA02
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j5vA01
2OGXA 1R3EA 2BRIA 2JI5A 3EK6A 4AXSA 4NDOB 1WXXA 2X2WA 1ZE1A 2J4LA 1YBDA 2WXBA 1ZL3A 2BUFA 3ZZFA 2JJXA 2Q07A 3S6KA 1B7BA 3QVFA 1OH9A 3C0KA 3L76A 2A1FA 1R3FA 2E9YA 3K4YA 1Q7HA 4JZ8A 2AKOA 4Q1TA 3U6UA 3D41A 4JZ7A 2B78A 3QUNA 4I49A 4A7XA 1K8WA 4NDQB 2CX1A 1WXWA 1E19A 3ZZGA 3D2MA 4USJA 1SQWA 4NDRA 1Z9DA 3VSEA 2AS0A 3UAIA 2J5TA 3K56A 1GS5A 2V4YA 2BNFA 1IT7A 2AB4A 4NDOA 3NWYA 3K4OA 4F6TB 3KZFA 4NDPB 2IJ9A 3C1NA 3K52A 1OHAA 3D2PA 1GSJA 1IT8A 4DMGA 3LL5A 2BRXA 2VA1A 2V5HA 2R98A 3LL9A 4JZ9A 1T5YA 1J2BA 3S6HA 3WWMA 2J5VA 2WE4A 3C1MA 4NDQA 2BNEA 2J4KA 2AP9A 4A7WA 3QURA 2R8VA 4AB7A 2BTYA 3AB4A 2W21A 3ZZIA 2OGXB 2CWWA 3LKKA 3AB2A 2WE5A 2J0XA 2HMFA 3D40A 3C20A 3EK5A 3T7BA 2RD5A 4KZTA 4F6TA 2BNDA 4NDPA 2JJ4A 3L86A 2J0WA 3B8GA 3TVIA 1IQ8A 3AAWA 2J4JA 2P38A 3LDFA 1ZE2A 2BMUA 3D79A 3S6GA 3ZZHA 3WWNA 2CDQA 4NDRB 1OHBA 2CX0A 3QUOA 1SGVA 3QVHA 1ZS7A 4OLCA
chains in the Genus database with same CATH superfamily
2OGXA 1R3EA 2BRIA 2JI5A 3EK6A 4AXSA 4NDOB 1WXXA 3M6XA 2X2WA 1ZE1A 2J4LA 1YBDA 2WXBA 1ZL3A 2BUFA 3ZZFA 2JJXA 3HJWA 2Q07A 3S6KA 1B7BA 3QVFA 1OH9A 3C0KA 3L76A 2A1FA 1R3FA 3HAXA 2E9YA 3K4YA 1Q7HA 4JZ8A 2Z0TA 2AKOA 4Q1TA 1S04A 3U6UA 3D41A 4JZ7A 2B78A 3QUNA 4I49A 4A7XA 1K8WA 4NDQB 3IUWA 2CX1A 2EY4A 1WXWA 1E19A 3ZZGA 4OLCA 3D2MA 4USJA 4CI2B 1SQWA 4NDRA 1Z9DA 3VSEA 2AS0A 3UAIA 2J5TA 3K56A 4CI3B 1GS5A 2V4YA 2BNFA 3LWQA 1IT7A 2AB4A 4NDOA 1XNEA 3NWYA 3K4OA 4F6TB 3KZFA 4NDPB 2IJ9A 3C1NA 3K52A 1OHAA 2DP9A 3D2PA 1GSJA 1IT8A 4DMGA 3MQKA 1WK2A 3LJCA 3LL5A 3M65A 2BRXA 2VA1A 2V5HA 2R98A 3LL9A 4JZ9A 1T5YA 3U28A 1J2BA 3M6UA 2HVYA 3M6WA 1UOYA 3S6HA 3M4XA 3WWMA 2J5VA 2WE4A 3C1MA 4NDQA 2BNEA 2J4KA 2AP9A 4A7WA 3QURA 2R8VA 4AB7A 2BTYA 3AB4A 1ZBOA 2W21A 3LWPA 3ZZIA 2OGXB 2CWWA 2AUSA 3LKKA 3AB2A 2FRXA 3LWOA 2WE5A 2J0XA 1TE7A 2HMFA 3D40A 4CI1B 3C20A 3EK5A 3ZV0C 3T7BA 2RFKA 2RD5A 4KZTA 4F6TA 2BNDA 4NDPA 2JJ4A 3L86A 2J0WA 2E5OA 3B8GA 3TVIA 1IQ8A 3AAWA 2J4JA 2P38A 3LWVA 3LDFA 2KKUA 1ZE2A 2BMUA 2ANEA 4TZ4C 3D79A 3S6GA 3ZZHA 3WWNA 2APOA 3LWRA 2CDQA 3M6VA 4NDRB 1OHBA 2CX0A 3QUOA 1SGVA 3QVHA 1ZS7A 3HJYA
chains in the Genus database with same CATH topology
2OGXA 1R3EA 2BRIA 2JI5A 3EK6A 4AXSA 4NDOB 1WXXA 2X2WA 1ZE1A 2J4LA 1YBDA 2WXBA 1ZL3A 2BUFA 3ZZFA 2JJXA 2Q07A 3S6KA 1B7BA 3QVFA 1OH9A 3C0KA 3L76A 2A1FA 1R3FA 2E9YA 3K4YA 1Q7HA 4JZ8A 2AKOA 4Q1TA 3U6UA 3D41A 4JZ7A 2B78A 3QUNA 4I49A 4A7XA 1K8WA 4NDQB 2CX1A 1WXWA 1E19A 3ZZGA 3D2MA 4USJA 1SQWA 4NDRA 1Z9DA 3VSEA 2AS0A 3UAIA 2J5TA 3K56A 1GS5A 2V4YA 2BNFA 1IT7A 2AB4A 4NDOA 3NWYA 3K4OA 4F6TB 3KZFA 4NDPB 2IJ9A 3C1NA 3K52A 1OHAA 3D2PA 1GSJA 1IT8A 4DMGA 3LL5A 2BRXA 2VA1A 2V5HA 2R98A 3LL9A 4JZ9A 1T5YA 1J2BA 3S6HA 3WWMA 2J5VA 2WE4A 3C1MA 4NDQA 2BNEA 2J4KA 2AP9A 4A7WA 3QURA 2R8VA 4AB7A 2BTYA 3AB4A 2W21A 3ZZIA 2OGXB 2CWWA 3LKKA 3AB2A 2WE5A 2J0XA 2HMFA 3D40A 3C20A 3EK5A 3T7BA 2RD5A 4KZTA 4F6TA 2BNDA 4NDPA 2JJ4A 3L86A 2J0WA 3B8GA 3TVIA 1IQ8A 3AAWA 2J4JA 2P38A 3LDFA 1ZE2A 2BMUA 3D79A 3S6GA 3ZZHA 3WWNA 2CDQA 4NDRB 1OHBA 2CX0A 3QUOA 1SGVA 3QVHA 1ZS7A 4OLCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OGX A;  1R3E A;  2BRI A;  2JI5 A;  3EK6 A;  4AXS A;  4NDO B;  1WXX A;  2X2W A;  1ZE1 A;  2J4L A;  1YBD A;  2WXB A;  1ZL3 A;  2BUF A;  3ZZF A;  2JJX A;  2Q07 A;  3S6K A;  1B7B A;  3QVF A;  1OH9 A;  3C0K A;  3L76 A;  2A1F A;  1R3F A;  2E9Y A;  3K4Y A;  1Q7H A;  4JZ8 A;  2AKO A;  4Q1T A;  3U6U A;  3D41 A;  4JZ7 A;  2B78 A;  3QUN A;  4I49 A;  4A7X A;  1K8W A;  4NDQ B;  2CX1 A;  1WXW A;  1E19 A;  3ZZG A;  3D2M A;  4USJ A;  1SQW A;  4NDR A;  1Z9D A;  3VSE A;  2AS0 A;  3UAI A;  2J5T A;  3K56 A;  1GS5 A;  2V4Y A;  2BNF A;  1IT7 A;  2AB4 A;  4NDO A;  3NWY A;  3K4O A;  4F6T B;  3KZF A;  4NDP B;  2IJ9 A;  3C1N A;  3K52 A;  1OHA A;  3D2P A;  1GSJ A;  1IT8 A;  4DMG A;  3LL5 A;  2BRX A;  2VA1 A;  2V5H A;  2R98 A;  3LL9 A;  4JZ9 A;  1T5Y A;  1J2B A;  3S6H A;  3WWM A;  2J5V A;  2WE4 A;  3C1M A;  4NDQ A;  2BNE A;  2J4K A;  2AP9 A;  4A7W A;  3QUR A;  2R8V A;  4AB7 A;  2BTY A;  3AB4 A;  2W21 A;  3ZZI A;  2OGX B;  2CWW A;  3LKK A;  3AB2 A;  2WE5 A;  2J0X A;  2HMF A;  3D40 A;  3C20 A;  3EK5 A;  3T7B A;  2RD5 A;  4KZT A;  4F6T A;  2BND A;  4NDP A;  2JJ4 A;  3L86 A;  2J0W A;  3B8G A;  3TVI A;  1IQ8 A;  3AAW A;  2J4J A;  2P38 A;  3LDF A;  1ZE2 A;  2BMU A;  3D79 A;  3S6G A;  3ZZH A;  3WWN A;  2CDQ A;  4NDR B;  1OHB A;  2CX0 A;  3QUO A;  1SGV A;  3QVH A;  1ZS7 A;  4OLC A; 
#chains in the Genus database with same CATH topology
 2OGX A;  1R3E A;  2BRI A;  2JI5 A;  3EK6 A;  4AXS A;  4NDO B;  1WXX A;  3M6X A;  2X2W A;  1ZE1 A;  2J4L A;  1YBD A;  2WXB A;  1ZL3 A;  2BUF A;  3ZZF A;  2JJX A;  3HJW A;  2Q07 A;  3S6K A;  1B7B A;  3QVF A;  1OH9 A;  3C0K A;  3L76 A;  2A1F A;  1R3F A;  3HAX A;  2E9Y A;  3K4Y A;  1Q7H A;  4JZ8 A;  2Z0T A;  2AKO A;  4Q1T A;  1S04 A;  3U6U A;  3D41 A;  4JZ7 A;  2B78 A;  3QUN A;  4I49 A;  4A7X A;  1K8W A;  4NDQ B;  3IUW A;  2CX1 A;  2EY4 A;  1WXW A;  1E19 A;  3ZZG A;  4OLC A;  3D2M A;  4USJ A;  4CI2 B;  1SQW A;  4NDR A;  1Z9D A;  3VSE A;  2AS0 A;  3UAI A;  2J5T A;  3K56 A;  4CI3 B;  1GS5 A;  2V4Y A;  2BNF A;  3LWQ A;  1IT7 A;  2AB4 A;  4NDO A;  1XNE A;  3NWY A;  3K4O A;  4F6T B;  3KZF A;  4NDP B;  2IJ9 A;  3C1N A;  3K52 A;  1OHA A;  2DP9 A;  3D2P A;  1GSJ A;  1IT8 A;  4DMG A;  3MQK A;  1WK2 A;  3LJC A;  3LL5 A;  3M65 A;  2BRX A;  2VA1 A;  2V5H A;  2R98 A;  3LL9 A;  4JZ9 A;  1T5Y A;  3U28 A;  1J2B A;  3M6U A;  2HVY A;  3M6W A;  1UOY A;  3S6H A;  3M4X A;  3WWM A;  2J5V A;  2WE4 A;  3C1M A;  4NDQ A;  2BNE A;  2J4K A;  2AP9 A;  4A7W A;  3QUR A;  2R8V A;  4AB7 A;  2BTY A;  3AB4 A;  1ZBO A;  2W21 A;  3LWP A;  3ZZI A;  2OGX B;  2CWW A;  2AUS A;  3LKK A;  3AB2 A;  2FRX A;  3LWO A;  2WE5 A;  2J0X A;  1TE7 A;  2HMF A;  3D40 A;  4CI1 B;  3C20 A;  3EK5 A;  3ZV0 C;  3T7B A;  2RFK A;  2RD5 A;  4KZT A;  4F6T A;  2BND A;  4NDP A;  2JJ4 A;  3L86 A;  2J0W A;  2E5O A;  3B8G A;  3TVI A;  1IQ8 A;  3AAW A;  2J4J A;  2P38 A;  3LWV A;  3LDF A;  2KKU A;  1ZE2 A;  2BMU A;  2ANE A;  4TZ4 C;  3D79 A;  3S6G A;  3ZZH A;  3WWN A;  2APO A;  3LWR A;  2CDQ A;  3M6V A;  4NDR B;  1OHB A;  2CX0 A;  3QUO A;  1SGV A;  3QVH A;  1ZS7 A;  3HJY A; 
#chains in the Genus database with same CATH homology
 2OGX A;  1R3E A;  2BRI A;  2JI5 A;  3EK6 A;  4AXS A;  4NDO B;  1WXX A;  2X2W A;  1ZE1 A;  2J4L A;  1YBD A;  2WXB A;  1ZL3 A;  2BUF A;  3ZZF A;  2JJX A;  2Q07 A;  3S6K A;  1B7B A;  3QVF A;  1OH9 A;  3C0K A;  3L76 A;  2A1F A;  1R3F A;  2E9Y A;  3K4Y A;  1Q7H A;  4JZ8 A;  2AKO A;  4Q1T A;  3U6U A;  3D41 A;  4JZ7 A;  2B78 A;  3QUN A;  4I49 A;  4A7X A;  1K8W A;  4NDQ B;  2CX1 A;  1WXW A;  1E19 A;  3ZZG A;  3D2M A;  4USJ A;  1SQW A;  4NDR A;  1Z9D A;  3VSE A;  2AS0 A;  3UAI A;  2J5T A;  3K56 A;  1GS5 A;  2V4Y A;  2BNF A;  1IT7 A;  2AB4 A;  4NDO A;  3NWY A;  3K4O A;  4F6T B;  3KZF A;  4NDP B;  2IJ9 A;  3C1N A;  3K52 A;  1OHA A;  3D2P A;  1GSJ A;  1IT8 A;  4DMG A;  3LL5 A;  2BRX A;  2VA1 A;  2V5H A;  2R98 A;  3LL9 A;  4JZ9 A;  1T5Y A;  1J2B A;  3S6H A;  3WWM A;  2J5V A;  2WE4 A;  3C1M A;  4NDQ A;  2BNE A;  2J4K A;  2AP9 A;  4A7W A;  3QUR A;  2R8V A;  4AB7 A;  2BTY A;  3AB4 A;  2W21 A;  3ZZI A;  2OGX B;  2CWW A;  3LKK A;  3AB2 A;  2WE5 A;  2J0X A;  2HMF A;  3D40 A;  3C20 A;  3EK5 A;  3T7B A;  2RD5 A;  4KZT A;  4F6T A;  2BND A;  4NDP A;  2JJ4 A;  3L86 A;  2J0W A;  3B8G A;  3TVI A;  1IQ8 A;  3AAW A;  2J4J A;  2P38 A;  3LDF A;  1ZE2 A;  2BMU A;  3D79 A;  3S6G A;  3ZZH A;  3WWN A;  2CDQ A;  4NDR B;  1OHB A;  2CX0 A;  3QUO A;  1SGV A;  3QVH A;  1ZS7 A;  4OLC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...