1WK2A

Crystal structure of a hypothetical protein from thermus thermophilus hb8
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
120
structure length
84
Chain Sequence
MERPKLGLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVPLYAWVLENAFRYEKPLHVPMFVDLSEVR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a hypothetical protein from thermus thermophilus HB8
rcsb
molecule tags Structural genomics, unknown function
source organism Thermus thermophilus
molecule keywords HYPOTHETICAL PROTEIN
total genus 18
structure length 84
sequence length 120
ec nomenclature
pdb deposition date 2004-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04266 ASCH ASCH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.30 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Hypothetical protein. 1wk2A00
2Z0TA 2E5OA 1S04A 3IUWA 1TE7A 1XNEA 1WK2A 2KKUA 2DP9A
chains in the Genus database with same CATH superfamily
2Z0TA 2AUSA 1ZS7A 2APOA 2E5OA 3M6XA 3M6UA 3LWOA 1S04A 3LDFA 1IQ8A 1XNEA 3UAIA 2P38A 1J2BA 1UOYA 3LWQA 2RFKA 1IT7A 4CI3B 1ZL3A 1WXWA 1IT8A 3C0KA 2FRXA 4CI2B 1ZBOA 1SQWA 2DP9A 3U28A 2HVYA 2EY4A 1ZE1A 2AS0A 3M4XA 2Q07A 3LWPA 1ZE2A 4TZ4C 2CX0A 2B78A 1TE7A 2CX1A 2ANEA 3HAXA 2AB4A 2J5TA 3ZV0C 1SGVA 1WK2A 1R3FA 4Q1TA 1R3EA 1WXXA 1Q7HA 3LJCA 3M6WA 1T5YA 2CWWA 3M6VA 1K8WA 3HJWA 3HJYA 3IUWA 4DMGA 2J5VA 3LWRA 3D79A 3MQKA 3VSEA 3M65A 2KKUA 3LWVA 4CI1B
chains in the Genus database with same CATH topology
2Z0TA 2E5OA 1S04A 3IUWA 4C26A 1TE7A 1XNEA 2DP9A 4P78C 2KKUA 1WHZA 1WK2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z0T A;  2E5O A;  1S04 A;  3IUW A;  1TE7 A;  1XNE A;  1WK2 A;  2KKU A;  2DP9 A; 
#chains in the Genus database with same CATH topology
 2Z0T A;  2AUS A;  1ZS7 A;  2APO A;  2E5O A;  3M6X A;  3M6U A;  3LWO A;  1S04 A;  3LDF A;  1IQ8 A;  1XNE A;  3UAI A;  2P38 A;  1J2B A;  1UOY A;  3LWQ A;  2RFK A;  1IT7 A;  4CI3 B;  1ZL3 A;  1WXW A;  1IT8 A;  3C0K A;  2FRX A;  4CI2 B;  1ZBO A;  1SQW A;  2DP9 A;  3U28 A;  2HVY A;  2EY4 A;  1ZE1 A;  2AS0 A;  3M4X A;  2Q07 A;  3LWP A;  1ZE2 A;  4TZ4 C;  2CX0 A;  2B78 A;  1TE7 A;  2CX1 A;  2ANE A;  3HAX A;  2AB4 A;  2J5T A;  3ZV0 C;  1SGV A;  1WK2 A;  1R3F A;  4Q1T A;  1R3E A;  1WXX A;  1Q7H A;  3LJC A;  3M6W A;  1T5Y A;  2CWW A;  3M6V A;  1K8W A;  3HJW A;  3HJY A;  3IUW A;  4DMG A;  2J5V A;  3LWR A;  3D79 A;  3MQK A;  3VSE A;  3M65 A;  2KKU A;  3LWV A;  4CI1 B; 
#chains in the Genus database with same CATH homology
 2Z0T A;  2E5O A;  1S04 A;  3IUW A;  4C26 A;  1TE7 A;  1XNE A;  2DP9 A;  4P78 C;  2KKU A;  1WHZ A;  1WK2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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