4Q1TA

Crystal structure of a glutamate 5-kinase from burkholderia thailandensis
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
372
structure length
340
Chain Sequence
MRSIIADSKRLVVKVGSSLVTNGLDHDAIGRWAAQIAALRNEGKEVVLVSSGAIAEGMQRLGWSRRPREIDELQAAAAVGQMGLAQVYESRFAEHGIRTAQILLTHADLADRERYLNARSTLLTLLRLGVVPIINENDTVVTDEIKDNDTLGALVANLIEGDALIILTDQQGLLVAEASAGAPELMLTKILAAKRAAHSGANTVIASGRERDVLLRLASGEAIGTQLIARTARMAARKQWMADHLQVRGHVVIDAGAVDKLTAGGKSLLPIGVVAVQGVFARGEVIACVNDAGREVARGITNYSSAEAKLIQRKPSGEIEAVLGYMLEPELIHRDNLVLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Glutamate 5-kinase
publication title Crystal structure of a glutamate 5-kinase from Burkholderia thailandensis
rcsb
source organism Burkholderia thailandensis
total genus 114
structure length 340
sequence length 372
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.11: Glutamate 5-kinase.
pdb deposition date 2014-04-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
A PF01472 PUA PUA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 4q1tA02
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4q1tA01
3C1NA 1ZE1A 3S6KA 4A7XA 2CDQA 2AS0A 3WWMA 3S6HA 1B7BA 3K4OA 3U6UA 2V4YA 3WWNA 3UAIA 1ZL3A 2E9YA 3EK6A 4NDQB 2W21A 1Z9DA 1GS5A 2J4JA 2CWWA 2A1FA 4NDRB 2J5TA 4AXSA 4NDOA 3NWYA 3EK5A 1SGVA 2BNEA 4NDQA 4Q1TA 1IT7A 1Q7HA 1OHBA 4USJA 3C20A 3QVHA 2Q07A 3D2MA 4NDRA 3C0KA 1IQ8A 1GSJA 1OHAA 1SQWA 3B8GA 3ZZIA 4NDOB 2WXBA 3QUOA 3LDFA 2AKOA 3VSEA 1WXWA 2OGXB 2IJ9A 1ZS7A 2J4KA 2BRXA 2P38A 3KZFA 2BNDA 4JZ8A 2JJ4A 4JZ7A 4NDPB 2CX1A 3AAWA 1T5YA 3AB2A 1R3FA 4I49A 3TVIA 3ZZFA 2OGXA 2BRIA 2BNFA 3K4YA 2J0XA 2VA1A 4NDPA 3S6GA 2BTYA 3L76A 1J2BA 3D79A 2BMUA 2V5HA 2B78A 2AP9A 3D40A 3QVFA 1R3EA 4A7WA 2X2WA 1IT8A 3LL9A 4OLCA 1OH9A 2BUFA 2J0WA 4F6TB 2HMFA 3K56A 3C1MA 2J5VA 3D41A 3ZZGA 4AB7A 3LL5A 2CX0A 3AB4A 3K52A 2WE5A 2J4LA 4KZTA 2JJXA 1K8WA 1WXXA 3QURA 4JZ9A 4F6TA 3ZZHA 2WE4A 1E19A 3LKKA 2R98A 4DMGA 1ZE2A 2AB4A 3D2PA 2RD5A 3L86A 2JI5A 2R8VA 1YBDA 3QUNA 3T7BA
chains in the Genus database with same CATH superfamily
2E5OA 3LWVA 3C1NA 1ZE1A 3S6KA 4A7XA 2CDQA 2AS0A 3WWMA 3S6HA 1B7BA 3K4OA 3U6UA 1S04A 2V4YA 3WWNA 3M65A 3UAIA 1ZL3A 2E9YA 1WK2A 3EK6A 4NDQB 3M6UA 2W21A 1Z9DA 1GS5A 2J4JA 2CWWA 3ZV0C 1ZBOA 2A1FA 4NDRB 2J5TA 4AXSA 4NDOA 4CI2B 3NWYA 3EK5A 1SGVA 2BNEA 4NDQA 4Q1TA 1IT7A 1Q7HA 1OHBA 4USJA 3C20A 3QVHA 2Q07A 3D2MA 4NDRA 3C0KA 4TZ4C 1IQ8A 1TE7A 1GSJA 1OHAA 1SQWA 3B8GA 3M6XA 3ZZIA 4NDOB 2WXBA 2EY4A 3QUOA 2DP9A 3LDFA 2AKOA 3VSEA 1UOYA 1WXWA 2OGXB 2IJ9A 1ZS7A 2J4KA 3MQKA 3HJWA 2BRXA 2P38A 3KZFA 3M6VA 2BNDA 3HAXA 3LWRA 3U28A 4JZ8A 2KKUA 2JJ4A 4JZ7A 4NDPB 2RFKA 2CX1A 3AAWA 1T5YA 3AB2A 1R3FA 4I49A 3TVIA 3ZZFA 2OGXA 2BRIA 3M4XA 2BNFA 3K4YA 2J0XA 2VA1A 4NDPA 3LWPA 3S6GA 2BTYA 3L76A 4CI1B 1J2BA 3D79A 2BMUA 2V5HA 2B78A 3LWQA 2AP9A 3D40A 3QVFA 1R3EA 4A7WA 2X2WA 1IT8A 2ANEA 3IUWA 1OH9A 3LL9A 4OLCA 2BUFA 2J0WA 4F6TB 2HMFA 3K56A 2HVYA 2AUSA 3C1MA 2J5VA 3D41A 3ZZGA 4AB7A 3LL5A 2CX0A 3AB4A 3K52A 2WE5A 3LWOA 1XNEA 2J4LA 3LJCA 2APOA 2JJXA 2FRXA 4KZTA 1K8WA 1WXXA 3QURA 4JZ9A 4F6TA 3ZZHA 2WE4A 3M6WA 1E19A 3LKKA 2R98A 4DMGA 1ZE2A 2AB4A 3D2PA 4CI3B 2Z0TA 2RD5A 3L86A 3HJYA 2JI5A 2R8VA 1YBDA 3QUNA 3T7BA
chains in the Genus database with same CATH topology
3C1NA 1ZE1A 3S6KA 4A7XA 2CDQA 2AS0A 3WWMA 3S6HA 1B7BA 3K4OA 3U6UA 2V4YA 3WWNA 3UAIA 1ZL3A 2E9YA 3EK6A 4NDQB 2W21A 1Z9DA 1GS5A 2J4JA 2CWWA 2A1FA 4NDRB 2J5TA 4AXSA 4NDOA 3NWYA 3EK5A 1SGVA 2BNEA 4NDQA 4Q1TA 1IT7A 1Q7HA 1OHBA 4USJA 3C20A 3QVHA 2Q07A 3D2MA 4NDRA 3C0KA 1IQ8A 1GSJA 1OHAA 1SQWA 3B8GA 3ZZIA 4NDOB 2WXBA 3QUOA 3LDFA 2AKOA 3VSEA 1WXWA 2OGXB 2IJ9A 1ZS7A 2J4KA 2BRXA 2P38A 3KZFA 2BNDA 4JZ8A 2JJ4A 4JZ7A 4NDPB 2CX1A 3AAWA 1T5YA 3AB2A 1R3FA 4I49A 3TVIA 3ZZFA 2OGXA 2BRIA 2BNFA 3K4YA 2J0XA 2VA1A 4NDPA 3S6GA 2BTYA 3L76A 1J2BA 3D79A 2BMUA 2V5HA 2B78A 2AP9A 3D40A 3QVFA 1R3EA 4A7WA 2X2WA 1IT8A 3LL9A 4OLCA 1OH9A 2BUFA 2J0WA 4F6TB 2HMFA 3K56A 3C1MA 2J5VA 3D41A 3ZZGA 4AB7A 3LL5A 2CX0A 3AB4A 3K52A 2WE5A 2J4LA 4KZTA 2JJXA 1K8WA 1WXXA 3QURA 4JZ9A 4F6TA 3ZZHA 2WE4A 1E19A 3LKKA 2R98A 4DMGA 1ZE2A 2AB4A 3D2PA 2RD5A 3L86A 2JI5A 2R8VA 1YBDA 3QUNA 3T7BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C1N A;  1ZE1 A;  3S6K A;  4A7X A;  2CDQ A;  2AS0 A;  3WWM A;  3S6H A;  1B7B A;  3K4O A;  3U6U A;  2V4Y A;  3WWN A;  3UAI A;  1ZL3 A;  2E9Y A;  3EK6 A;  4NDQ B;  2W21 A;  1Z9D A;  1GS5 A;  2J4J A;  2CWW A;  2A1F A;  4NDR B;  2J5T A;  4AXS A;  4NDO A;  3NWY A;  3EK5 A;  1SGV A;  2BNE A;  4NDQ A;  4Q1T A;  1IT7 A;  1Q7H A;  1OHB A;  4USJ A;  3C20 A;  3QVH A;  2Q07 A;  3D2M A;  4NDR A;  3C0K A;  1IQ8 A;  1GSJ A;  1OHA A;  1SQW A;  3B8G A;  3ZZI A;  4NDO B;  2WXB A;  3QUO A;  3LDF A;  2AKO A;  3VSE A;  1WXW A;  2OGX B;  2IJ9 A;  1ZS7 A;  2J4K A;  2BRX A;  2P38 A;  3KZF A;  2BND A;  4JZ8 A;  2JJ4 A;  4JZ7 A;  4NDP B;  2CX1 A;  3AAW A;  1T5Y A;  3AB2 A;  1R3F A;  4I49 A;  3TVI A;  3ZZF A;  2OGX A;  2BRI A;  2BNF A;  3K4Y A;  2J0X A;  2VA1 A;  4NDP A;  3S6G A;  2BTY A;  3L76 A;  1J2B A;  3D79 A;  2BMU A;  2V5H A;  2B78 A;  2AP9 A;  3D40 A;  3QVF A;  1R3E A;  4A7W A;  2X2W A;  1IT8 A;  3LL9 A;  4OLC A;  1OH9 A;  2BUF A;  2J0W A;  4F6T B;  2HMF A;  3K56 A;  3C1M A;  2J5V A;  3D41 A;  3ZZG A;  4AB7 A;  3LL5 A;  2CX0 A;  3AB4 A;  3K52 A;  2WE5 A;  2J4L A;  4KZT A;  2JJX A;  1K8W A;  1WXX A;  3QUR A;  4JZ9 A;  4F6T A;  3ZZH A;  2WE4 A;  1E19 A;  3LKK A;  2R98 A;  4DMG A;  1ZE2 A;  2AB4 A;  3D2P A;  2RD5 A;  3L86 A;  2JI5 A;  2R8V A;  1YBD A;  3QUN A;  3T7B A; 
#chains in the Genus database with same CATH topology
 2E5O A;  3LWV A;  3C1N A;  1ZE1 A;  3S6K A;  4A7X A;  2CDQ A;  2AS0 A;  3WWM A;  3S6H A;  1B7B A;  3K4O A;  3U6U A;  1S04 A;  2V4Y A;  3WWN A;  3M65 A;  3UAI A;  1ZL3 A;  2E9Y A;  1WK2 A;  3EK6 A;  4NDQ B;  3M6U A;  2W21 A;  1Z9D A;  1GS5 A;  2J4J A;  2CWW A;  3ZV0 C;  1ZBO A;  2A1F A;  4NDR B;  2J5T A;  4AXS A;  4NDO A;  4CI2 B;  3NWY A;  3EK5 A;  1SGV A;  2BNE A;  4NDQ A;  4Q1T A;  1IT7 A;  1Q7H A;  1OHB A;  4USJ A;  3C20 A;  3QVH A;  2Q07 A;  3D2M A;  4NDR A;  3C0K A;  4TZ4 C;  1IQ8 A;  1TE7 A;  1GSJ A;  1OHA A;  1SQW A;  3B8G A;  3M6X A;  3ZZI A;  4NDO B;  2WXB A;  2EY4 A;  3QUO A;  2DP9 A;  3LDF A;  2AKO A;  3VSE A;  1UOY A;  1WXW A;  2OGX B;  2IJ9 A;  1ZS7 A;  2J4K A;  3MQK A;  3HJW A;  2BRX A;  2P38 A;  3KZF A;  3M6V A;  2BND A;  3HAX A;  3LWR A;  3U28 A;  4JZ8 A;  2KKU A;  2JJ4 A;  4JZ7 A;  4NDP B;  2RFK A;  2CX1 A;  3AAW A;  1T5Y A;  3AB2 A;  1R3F A;  4I49 A;  3TVI A;  3ZZF A;  2OGX A;  2BRI A;  3M4X A;  2BNF A;  3K4Y A;  2J0X A;  2VA1 A;  4NDP A;  3LWP A;  3S6G A;  2BTY A;  3L76 A;  4CI1 B;  1J2B A;  3D79 A;  2BMU A;  2V5H A;  2B78 A;  3LWQ A;  2AP9 A;  3D40 A;  3QVF A;  1R3E A;  4A7W A;  2X2W A;  1IT8 A;  2ANE A;  3IUW A;  1OH9 A;  3LL9 A;  4OLC A;  2BUF A;  2J0W A;  4F6T B;  2HMF A;  3K56 A;  2HVY A;  2AUS A;  3C1M A;  2J5V A;  3D41 A;  3ZZG A;  4AB7 A;  3LL5 A;  2CX0 A;  3AB4 A;  3K52 A;  2WE5 A;  3LWO A;  1XNE A;  2J4L A;  3LJC A;  2APO A;  2JJX A;  2FRX A;  4KZT A;  1K8W A;  1WXX A;  3QUR A;  4JZ9 A;  4F6T A;  3ZZH A;  2WE4 A;  3M6W A;  1E19 A;  3LKK A;  2R98 A;  4DMG A;  1ZE2 A;  2AB4 A;  3D2P A;  4CI3 B;  2Z0T A;  2RD5 A;  3L86 A;  3HJY A;  2JI5 A;  2R8V A;  1YBD A;  3QUN A;  3T7B A; 
#chains in the Genus database with same CATH homology
 3C1N A;  1ZE1 A;  3S6K A;  4A7X A;  2CDQ A;  2AS0 A;  3WWM A;  3S6H A;  1B7B A;  3K4O A;  3U6U A;  2V4Y A;  3WWN A;  3UAI A;  1ZL3 A;  2E9Y A;  3EK6 A;  4NDQ B;  2W21 A;  1Z9D A;  1GS5 A;  2J4J A;  2CWW A;  2A1F A;  4NDR B;  2J5T A;  4AXS A;  4NDO A;  3NWY A;  3EK5 A;  1SGV A;  2BNE A;  4NDQ A;  4Q1T A;  1IT7 A;  1Q7H A;  1OHB A;  4USJ A;  3C20 A;  3QVH A;  2Q07 A;  3D2M A;  4NDR A;  3C0K A;  1IQ8 A;  1GSJ A;  1OHA A;  1SQW A;  3B8G A;  3ZZI A;  4NDO B;  2WXB A;  3QUO A;  3LDF A;  2AKO A;  3VSE A;  1WXW A;  2OGX B;  2IJ9 A;  1ZS7 A;  2J4K A;  2BRX A;  2P38 A;  3KZF A;  2BND A;  4JZ8 A;  2JJ4 A;  4JZ7 A;  4NDP B;  2CX1 A;  3AAW A;  1T5Y A;  3AB2 A;  1R3F A;  4I49 A;  3TVI A;  3ZZF A;  2OGX A;  2BRI A;  2BNF A;  3K4Y A;  2J0X A;  2VA1 A;  4NDP A;  3S6G A;  2BTY A;  3L76 A;  1J2B A;  3D79 A;  2BMU A;  2V5H A;  2B78 A;  2AP9 A;  3D40 A;  3QVF A;  1R3E A;  4A7W A;  2X2W A;  1IT8 A;  3LL9 A;  4OLC A;  1OH9 A;  2BUF A;  2J0W A;  4F6T B;  2HMF A;  3K56 A;  3C1M A;  2J5V A;  3D41 A;  3ZZG A;  4AB7 A;  3LL5 A;  2CX0 A;  3AB4 A;  3K52 A;  2WE5 A;  2J4L A;  4KZT A;  2JJX A;  1K8W A;  1WXX A;  3QUR A;  4JZ9 A;  4F6T A;  3ZZH A;  2WE4 A;  1E19 A;  3LKK A;  2R98 A;  4DMG A;  1ZE2 A;  2AB4 A;  3D2P A;  2RD5 A;  3L86 A;  2JI5 A;  2R8V A;  1YBD A;  3QUN A;  3T7B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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