4Q1TA

Crystal structure of a glutamate 5-kinase from burkholderia thailandensis
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
372
structure length
340
Chain Sequence
MRSIIADSKRLVVKVGSSLVTNGLDHDAIGRWAAQIAALRNEGKEVVLVSSGAIAEGMQRLGWSRRPREIDELQAAAAVGQMGLAQVYESRFAEHGIRTAQILLTHADLADRERYLNARSTLLTLLRLGVVPIINENDTVVTDEIKDNDTLGALVANLIEGDALIILTDQQGLLVAEASAGAPELMLTKILAAKRAAHSGANTVIASGRERDVLLRLASGEAIGTQLIARTARMAARKQWMADHLQVRGHVVIDAGAVDKLTAGGKSLLPIGVVAVQGVFARGEVIACVNDAGREVARGITNYSSAEAKLIQRKPSGEIEAVLGYMLEPELIHRDNLVLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Glutamate 5-kinase
publication title Crystal structure of a glutamate 5-kinase from Burkholderia thailandensis
rcsb
source organism Burkholderia thailandensis
molecule tags Transferase
total genus 114
structure length 340
sequence length 372
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.11: Glutamate 5-kinase.
pdb deposition date 2014-04-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
A PF01472 PUA PUA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 4q1tA02
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4q1tA01
2WXBA 2AKOA 4OLCA 2OGXB 2B78A 1ZE1A 1R3EA 2J4LA 3C20A 4NDPB 2JJXA 3AAWA 3ZZHA 2J5TA 4NDOB 3AB2A 1Q7HA 2AP9A 4AB7A 2RD5A 2Q07A 1ZE2A 1OHBA 3D2PA 1IQ8A 3D40A 2A1FA 2V5HA 1J2BA 3S6HA 3L86A 3KZFA 3QURA 4A7WA 4JZ7A 1IT7A 3QVHA 1E19A 1OH9A 4F6TA 2J4KA 2HMFA 1GS5A 4I49A 3U6UA 3D79A 2V4YA 3C0KA 2AS0A 2JI5A 3C1MA 4Q1TA 1ZS7A 1OHAA 3C1NA 3LL9A 1ZL3A 2CWWA 3QUNA 3K4OA 1IT8A 2VA1A 2J5VA 2WE4A 1SGVA 3D41A 3QUOA 4JZ9A 3LKKA 1SQWA 3ZZIA 3WWNA 4USJA 3NWYA 4NDQA 2R8VA 1GSJA 2WE5A 3EK5A 3D2MA 2J0XA 4DMGA 4NDRA 3QVFA 2E9YA 2JJ4A 3UAIA 2BMUA 4F6TB 3S6KA 3ZZGA 1Z9DA 2J4JA 2P38A 1B7BA 1K8WA 2BUFA 2W21A 2BNEA 3K52A 4NDOA 1T5YA 1YBDA 2BRXA 3AB4A 2IJ9A 2CX1A 3T7BA 2J0WA 1R3FA 2CDQA 3WWMA 3L76A 2BNDA 3K4YA 3ZZFA 4KZTA 3EK6A 4AXSA 3K56A 2AB4A 3VSEA 3S6GA 3LL5A 2OGXA 2BTYA 4NDQB 2X2WA 4A7XA 1WXWA 1WXXA 2BNFA 4JZ8A 2CX0A 3LDFA 2R98A 2BRIA 4NDPA 3TVIA 4NDRB 3B8GA
chains in the Genus database with same CATH superfamily
2WXBA 2AKOA 4OLCA 2OGXB 2Z0TA 2B78A 1ZE1A 1R3EA 2J4LA 3C20A 4NDPB 2JJXA 3AAWA 3ZZHA 2J5TA 1TE7A 3U28A 3LJCA 4NDOB 3AB2A 1Q7HA 2AP9A 2APOA 4AB7A 2RFKA 2RD5A 2Q07A 1ZE2A 1OHBA 4CI1B 1WK2A 3D2PA 1IQ8A 2AUSA 3D40A 2A1FA 2V5HA 1J2BA 3S6HA 3L86A 4TZ4C 3KZFA 3QURA 4A7WA 4JZ7A 1IT7A 3QVHA 1E19A 1OH9A 2FRXA 4F6TA 3M6XA 2J4KA 2HMFA 1GS5A 4I49A 3U6UA 3D79A 2V4YA 3C0KA 2AS0A 2JI5A 3C1MA 1UOYA 1ZBOA 4Q1TA 1ZS7A 1OHAA 3C1NA 3LL9A 1ZL3A 1S04A 3LWRA 2CWWA 3QUNA 3K4OA 1IT8A 2ANEA 2VA1A 2J5VA 2WE4A 1SGVA 3M6UA 2HVYA 3D41A 2E5OA 3QUOA 4JZ9A 3LKKA 1SQWA 4CI2B 3ZZIA 3HAXA 3WWNA 4USJA 3IUWA 3NWYA 4NDQA 3M65A 2R8VA 1GSJA 2WE5A 3EK5A 3D2MA 2J0XA 4DMGA 2DP9A 4NDRA 1XNEA 3QVFA 2E9YA 3LWPA 2JJ4A 3UAIA 3M4XA 4CI3B 2BMUA 4F6TB 3S6KA 3LWQA 3M6WA 3ZZGA 1Z9DA 2J4JA 2P38A 1B7BA 1K8WA 2BUFA 2W21A 2BNEA 3K52A 4NDOA 1T5YA 1YBDA 2BRXA 3AB4A 3MQKA 2IJ9A 2CX1A 3T7BA 2J0WA 1R3FA 3HJWA 2CDQA 3WWMA 2KKUA 3HJYA 3L76A 2BNDA 3K4YA 3ZZFA 4KZTA 3EK6A 4AXSA 3K56A 2AB4A 3VSEA 3S6GA 3LWOA 3LL5A 2OGXA 3ZV0C 2BTYA 4NDQB 2X2WA 4A7XA 1WXWA 2EY4A 3M6VA 1WXXA 3LWVA 2BNFA 4JZ8A 2CX0A 3LDFA 2R98A 2BRIA 4NDPA 3TVIA 4NDRB 3B8GA
chains in the Genus database with same CATH topology
2WXBA 2AKOA 4OLCA 2OGXB 2B78A 1ZE1A 1R3EA 2J4LA 3C20A 4NDPB 2JJXA 3AAWA 3ZZHA 2J5TA 4NDOB 3AB2A 1Q7HA 2AP9A 4AB7A 2RD5A 2Q07A 1ZE2A 1OHBA 3D2PA 1IQ8A 3D40A 2A1FA 2V5HA 1J2BA 3S6HA 3L86A 3KZFA 3QURA 4A7WA 4JZ7A 1IT7A 3QVHA 1E19A 1OH9A 4F6TA 2J4KA 2HMFA 1GS5A 4I49A 3U6UA 3D79A 2V4YA 3C0KA 2AS0A 2JI5A 3C1MA 4Q1TA 1ZS7A 1OHAA 3C1NA 3LL9A 1ZL3A 2CWWA 3QUNA 3K4OA 1IT8A 2VA1A 2J5VA 2WE4A 1SGVA 3D41A 3QUOA 4JZ9A 3LKKA 1SQWA 3ZZIA 3WWNA 4USJA 3NWYA 4NDQA 2R8VA 1GSJA 2WE5A 3EK5A 3D2MA 2J0XA 4DMGA 4NDRA 3QVFA 2E9YA 2JJ4A 3UAIA 2BMUA 4F6TB 3S6KA 3ZZGA 1Z9DA 2J4JA 2P38A 1B7BA 1K8WA 2BUFA 2W21A 2BNEA 3K52A 4NDOA 1T5YA 1YBDA 2BRXA 3AB4A 2IJ9A 2CX1A 3T7BA 2J0WA 1R3FA 2CDQA 3WWMA 3L76A 2BNDA 3K4YA 3ZZFA 4KZTA 3EK6A 4AXSA 3K56A 2AB4A 3VSEA 3S6GA 3LL5A 2OGXA 2BTYA 4NDQB 2X2WA 4A7XA 1WXWA 1WXXA 2BNFA 4JZ8A 2CX0A 3LDFA 2R98A 2BRIA 4NDPA 3TVIA 4NDRB 3B8GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WXB A;  2AKO A;  4OLC A;  2OGX B;  2B78 A;  1ZE1 A;  1R3E A;  2J4L A;  3C20 A;  4NDP B;  2JJX A;  3AAW A;  3ZZH A;  2J5T A;  4NDO B;  3AB2 A;  1Q7H A;  2AP9 A;  4AB7 A;  2RD5 A;  2Q07 A;  1ZE2 A;  1OHB A;  3D2P A;  1IQ8 A;  3D40 A;  2A1F A;  2V5H A;  1J2B A;  3S6H A;  3L86 A;  3KZF A;  3QUR A;  4A7W A;  4JZ7 A;  1IT7 A;  3QVH A;  1E19 A;  1OH9 A;  4F6T A;  2J4K A;  2HMF A;  1GS5 A;  4I49 A;  3U6U A;  3D79 A;  2V4Y A;  3C0K A;  2AS0 A;  2JI5 A;  3C1M A;  4Q1T A;  1ZS7 A;  1OHA A;  3C1N A;  3LL9 A;  1ZL3 A;  2CWW A;  3QUN A;  3K4O A;  1IT8 A;  2VA1 A;  2J5V A;  2WE4 A;  1SGV A;  3D41 A;  3QUO A;  4JZ9 A;  3LKK A;  1SQW A;  3ZZI A;  3WWN A;  4USJ A;  3NWY A;  4NDQ A;  2R8V A;  1GSJ A;  2WE5 A;  3EK5 A;  3D2M A;  2J0X A;  4DMG A;  4NDR A;  3QVF A;  2E9Y A;  2JJ4 A;  3UAI A;  2BMU A;  4F6T B;  3S6K A;  3ZZG A;  1Z9D A;  2J4J A;  2P38 A;  1B7B A;  1K8W A;  2BUF A;  2W21 A;  2BNE A;  3K52 A;  4NDO A;  1T5Y A;  1YBD A;  2BRX A;  3AB4 A;  2IJ9 A;  2CX1 A;  3T7B A;  2J0W A;  1R3F A;  2CDQ A;  3WWM A;  3L76 A;  2BND A;  3K4Y A;  3ZZF A;  4KZT A;  3EK6 A;  4AXS A;  3K56 A;  2AB4 A;  3VSE A;  3S6G A;  3LL5 A;  2OGX A;  2BTY A;  4NDQ B;  2X2W A;  4A7X A;  1WXW A;  1WXX A;  2BNF A;  4JZ8 A;  2CX0 A;  3LDF A;  2R98 A;  2BRI A;  4NDP A;  3TVI A;  4NDR B;  3B8G A; 
#chains in the Genus database with same CATH topology
 2WXB A;  2AKO A;  4OLC A;  2OGX B;  2Z0T A;  2B78 A;  1ZE1 A;  1R3E A;  2J4L A;  3C20 A;  4NDP B;  2JJX A;  3AAW A;  3ZZH A;  2J5T A;  1TE7 A;  3U28 A;  3LJC A;  4NDO B;  3AB2 A;  1Q7H A;  2AP9 A;  2APO A;  4AB7 A;  2RFK A;  2RD5 A;  2Q07 A;  1ZE2 A;  1OHB A;  4CI1 B;  1WK2 A;  3D2P A;  1IQ8 A;  2AUS A;  3D40 A;  2A1F A;  2V5H A;  1J2B A;  3S6H A;  3L86 A;  4TZ4 C;  3KZF A;  3QUR A;  4A7W A;  4JZ7 A;  1IT7 A;  3QVH A;  1E19 A;  1OH9 A;  2FRX A;  4F6T A;  3M6X A;  2J4K A;  2HMF A;  1GS5 A;  4I49 A;  3U6U A;  3D79 A;  2V4Y A;  3C0K A;  2AS0 A;  2JI5 A;  3C1M A;  1UOY A;  1ZBO A;  4Q1T A;  1ZS7 A;  1OHA A;  3C1N A;  3LL9 A;  1ZL3 A;  1S04 A;  3LWR A;  2CWW A;  3QUN A;  3K4O A;  1IT8 A;  2ANE A;  2VA1 A;  2J5V A;  2WE4 A;  1SGV A;  3M6U A;  2HVY A;  3D41 A;  2E5O A;  3QUO A;  4JZ9 A;  3LKK A;  1SQW A;  4CI2 B;  3ZZI A;  3HAX A;  3WWN A;  4USJ A;  3IUW A;  3NWY A;  4NDQ A;  3M65 A;  2R8V A;  1GSJ A;  2WE5 A;  3EK5 A;  3D2M A;  2J0X A;  4DMG A;  2DP9 A;  4NDR A;  1XNE A;  3QVF A;  2E9Y A;  3LWP A;  2JJ4 A;  3UAI A;  3M4X A;  4CI3 B;  2BMU A;  4F6T B;  3S6K A;  3LWQ A;  3M6W A;  3ZZG A;  1Z9D A;  2J4J A;  2P38 A;  1B7B A;  1K8W A;  2BUF A;  2W21 A;  2BNE A;  3K52 A;  4NDO A;  1T5Y A;  1YBD A;  2BRX A;  3AB4 A;  3MQK A;  2IJ9 A;  2CX1 A;  3T7B A;  2J0W A;  1R3F A;  3HJW A;  2CDQ A;  3WWM A;  2KKU A;  3HJY A;  3L76 A;  2BND A;  3K4Y A;  3ZZF A;  4KZT A;  3EK6 A;  4AXS A;  3K56 A;  2AB4 A;  3VSE A;  3S6G A;  3LWO A;  3LL5 A;  2OGX A;  3ZV0 C;  2BTY A;  4NDQ B;  2X2W A;  4A7X A;  1WXW A;  2EY4 A;  3M6V A;  1WXX A;  3LWV A;  2BNF A;  4JZ8 A;  2CX0 A;  3LDF A;  2R98 A;  2BRI A;  4NDP A;  3TVI A;  4NDR B;  3B8G A; 
#chains in the Genus database with same CATH homology
 2WXB A;  2AKO A;  4OLC A;  2OGX B;  2B78 A;  1ZE1 A;  1R3E A;  2J4L A;  3C20 A;  4NDP B;  2JJX A;  3AAW A;  3ZZH A;  2J5T A;  4NDO B;  3AB2 A;  1Q7H A;  2AP9 A;  4AB7 A;  2RD5 A;  2Q07 A;  1ZE2 A;  1OHB A;  3D2P A;  1IQ8 A;  3D40 A;  2A1F A;  2V5H A;  1J2B A;  3S6H A;  3L86 A;  3KZF A;  3QUR A;  4A7W A;  4JZ7 A;  1IT7 A;  3QVH A;  1E19 A;  1OH9 A;  4F6T A;  2J4K A;  2HMF A;  1GS5 A;  4I49 A;  3U6U A;  3D79 A;  2V4Y A;  3C0K A;  2AS0 A;  2JI5 A;  3C1M A;  4Q1T A;  1ZS7 A;  1OHA A;  3C1N A;  3LL9 A;  1ZL3 A;  2CWW A;  3QUN A;  3K4O A;  1IT8 A;  2VA1 A;  2J5V A;  2WE4 A;  1SGV A;  3D41 A;  3QUO A;  4JZ9 A;  3LKK A;  1SQW A;  3ZZI A;  3WWN A;  4USJ A;  3NWY A;  4NDQ A;  2R8V A;  1GSJ A;  2WE5 A;  3EK5 A;  3D2M A;  2J0X A;  4DMG A;  4NDR A;  3QVF A;  2E9Y A;  2JJ4 A;  3UAI A;  2BMU A;  4F6T B;  3S6K A;  3ZZG A;  1Z9D A;  2J4J A;  2P38 A;  1B7B A;  1K8W A;  2BUF A;  2W21 A;  2BNE A;  3K52 A;  4NDO A;  1T5Y A;  1YBD A;  2BRX A;  3AB4 A;  2IJ9 A;  2CX1 A;  3T7B A;  2J0W A;  1R3F A;  2CDQ A;  3WWM A;  3L76 A;  2BND A;  3K4Y A;  3ZZF A;  4KZT A;  3EK6 A;  4AXS A;  3K56 A;  2AB4 A;  3VSE A;  3S6G A;  3LL5 A;  2OGX A;  2BTY A;  4NDQ B;  2X2W A;  4A7X A;  1WXW A;  1WXX A;  2BNF A;  4JZ8 A;  2CX0 A;  3LDF A;  2R98 A;  2BRI A;  4NDP A;  3TVI A;  4NDR B;  3B8G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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