4Q1TA

Crystal structure of a glutamate 5-kinase from burkholderia thailandensis
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
372
structure length
340
Chain Sequence
MRSIIADSKRLVVKVGSSLVTNGLDHDAIGRWAAQIAALRNEGKEVVLVSSGAIAEGMQRLGWSRRPREIDELQAAAAVGQMGLAQVYESRFAEHGIRTAQILLTHADLADRERYLNARSTLLTLLRLGVVPIINENDTVVTDEIKDNDTLGALVANLIEGDALIILTDQQGLLVAEASAGAPELMLTKILAAKRAAHSGANTVIASGRERDVLLRLASGEAIGTQLIARTARMAARKQWMADHLQVRGHVVIDAGAVDKLTAGGKSLLPIGVVAVQGVFARGEVIACVNDAGREVARGITNYSSAEAKLIQRKPSGEIEAVLGYMLEPELIHRDNLVLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a glutamate 5-kinase from Burkholderia thailandensis
rcsb
source organism Burkholderia thailandensis
molecule tags Transferase
molecule keywords Glutamate 5-kinase
total genus 114
structure length 340
sequence length 372
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.11: Glutamate 5-kinase.
pdb deposition date 2014-04-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
A PF01472 PUA PUA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 4q1tA02
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4q1tA01
4AXSA 3S6KA 3WWNA 3K4OA 3C0KA 1SGVA 3WWMA 3K4YA 3ZZHA 3UAIA 1R3EA 3B8GA 2X2WA 3AB4A 1K8WA 2V5HA 4NDRA 2J0XA 2CWWA 3QVFA 2BUFA 4Q1TA 3ZZIA 3QUOA 2JJ4A 1ZS7A 2J0WA 1IT7A 3ZZFA 2JJXA 2BNFA 4F6TA 1OH9A 3D79A 4OLCA 1IT8A 1ZL3A 3S6GA 3LDFA 4A7WA 4DMGA 2J5TA 2W21A 3QURA 2AS0A 3U6UA 4NDQA 3AB2A 3C1MA 4JZ8A 3T7BA 3LKKA 3LL9A 4NDOB 4JZ7A 1ZE2A 4JZ9A 1YBDA 2BNEA 4USJA 2HMFA 3L86A 3K56A 4NDPA 2CX0A 2J5VA 3NWYA 2B78A 4NDRB 3TVIA 2R8VA 2BRIA 2AB4A 2J4LA 1B7BA 2RD5A 3S6HA 2CX1A 2VA1A 1SQWA 1R3FA 3KZFA 3EK5A 2BMUA 4KZTA 4NDOA 3C20A 4A7XA 2WE4A 3C1NA 3VSEA 2AP9A 1T5YA 1WXXA 3LL5A 2R98A 1ZE1A 2AKOA 2J4KA 3D2PA 1GSJA 2BNDA 2P38A 2V4YA 4F6TB 3L76A 1WXWA 3EK6A 2A1FA 3D40A 1IQ8A 1J2BA 2E9YA 2CDQA 3QUNA 4I49A 2BRXA 3ZZGA 1OHBA 2IJ9A 2WE5A 1E19A 1OHAA 3D2MA 1GS5A 3K52A 4AB7A 2WXBA 2J4JA 2Q07A 4NDQB 1Z9DA 2OGXB 2BTYA 2JI5A 3QVHA 4NDPB 1Q7HA 2OGXA 3D41A 3AAWA
chains in the Genus database with same CATH superfamily
4AXSA 3S6KA 3LJCA 3K4OA 3WWNA 3C0KA 1SGVA 3WWMA 3K4YA 3ZZHA 1S04A 2EY4A 3UAIA 1R3EA 3B8GA 2X2WA 3M6UA 3AB4A 1K8WA 2V5HA 4NDRA 2J0XA 2CWWA 4CI3B 3QVFA 2BUFA 4Q1TA 4CI2B 3QUOA 3ZZIA 2RFKA 2JJ4A 1ZS7A 2J0WA 2APOA 1IT7A 3ZZFA 2JJXA 2BNFA 3LWOA 4F6TA 2HVYA 1OH9A 4CI1B 3HAXA 2KKUA 3D79A 4OLCA 1IT8A 1ZL3A 3S6GA 3LDFA 4A7WA 4DMGA 2J5TA 2W21A 3QURA 2AS0A 3U6UA 4NDQA 3AB2A 3C1MA 4JZ8A 4AB7A 3LWPA 3T7BA 3LKKA 3LL9A 4NDOB 4JZ7A 1ZE2A 3ZV0C 4JZ9A 3LWVA 1YBDA 2BNEA 4TZ4C 4USJA 2HMFA 3L86A 3K56A 4NDPA 3M6XA 2CX0A 2J5VA 3NWYA 2B78A 4NDRB 3TVIA 2R8VA 2Z0TA 2ANEA 2BRIA 2AB4A 3HJWA 3U28A 2J4LA 1B7BA 3M6WA 3M6VA 2RD5A 1TE7A 3S6HA 2CX1A 2VA1A 1SQWA 1R3FA 3KZFA 3EK5A 2BMUA 4KZTA 1UOYA 4NDOA 3C20A 4A7XA 2FRXA 3M4XA 2WE4A 3C1NA 3MQKA 1XNEA 3VSEA 2AP9A 3LWRA 1T5YA 3HJYA 1WXXA 1WK2A 3LL5A 2R98A 1ZE1A 2AKOA 2J4KA 3D2PA 1GSJA 2BNDA 2P38A 2V4YA 2AUSA 4F6TB 3L76A 1WXWA 3EK6A 2A1FA 3D40A 1IQ8A 3LWQA 1J2BA 2E9YA 2CDQA 3M65A 3QUNA 4I49A 2BRXA 3ZZGA 2E5OA 1OHBA 2IJ9A 2WE5A 1E19A 1OHAA 3D2MA 1GS5A 1ZBOA 3K52A 2WXBA 2J4JA 2Q07A 2DP9A 4NDQB 3IUWA 1Z9DA 2OGXB 2BTYA 2JI5A 3QVHA 4NDPB 1Q7HA 2OGXA 3D41A 3AAWA
chains in the Genus database with same CATH topology
4AXSA 3S6KA 3WWNA 3K4OA 3C0KA 1SGVA 3WWMA 3K4YA 3ZZHA 3UAIA 1R3EA 3B8GA 2X2WA 3AB4A 1K8WA 2V5HA 4NDRA 2J0XA 2CWWA 3QVFA 2BUFA 4Q1TA 3ZZIA 3QUOA 2JJ4A 1ZS7A 2J0WA 1IT7A 3ZZFA 2JJXA 2BNFA 4F6TA 1OH9A 3D79A 4OLCA 1IT8A 1ZL3A 3S6GA 3LDFA 4A7WA 4DMGA 2J5TA 2W21A 3QURA 2AS0A 3U6UA 4NDQA 3AB2A 3C1MA 4JZ8A 3T7BA 3LKKA 3LL9A 4NDOB 4JZ7A 1ZE2A 4JZ9A 1YBDA 2BNEA 4USJA 2HMFA 3L86A 3K56A 4NDPA 2CX0A 2J5VA 3NWYA 2B78A 4NDRB 3TVIA 2R8VA 2BRIA 2AB4A 2J4LA 1B7BA 2RD5A 3S6HA 2CX1A 2VA1A 1SQWA 1R3FA 3KZFA 3EK5A 2BMUA 4KZTA 4NDOA 3C20A 4A7XA 2WE4A 3C1NA 3VSEA 2AP9A 1T5YA 1WXXA 3LL5A 2R98A 1ZE1A 2AKOA 2J4KA 3D2PA 1GSJA 2BNDA 2P38A 2V4YA 4F6TB 3L76A 1WXWA 3EK6A 2A1FA 3D40A 1IQ8A 1J2BA 2E9YA 2CDQA 3QUNA 4I49A 2BRXA 3ZZGA 1OHBA 2IJ9A 2WE5A 1E19A 1OHAA 3D2MA 1GS5A 3K52A 4AB7A 2WXBA 2J4JA 2Q07A 4NDQB 1Z9DA 2OGXB 2BTYA 2JI5A 3QVHA 4NDPB 1Q7HA 2OGXA 3D41A 3AAWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AXS A;  3S6K A;  3WWN A;  3K4O A;  3C0K A;  1SGV A;  3WWM A;  3K4Y A;  3ZZH A;  3UAI A;  1R3E A;  3B8G A;  2X2W A;  3AB4 A;  1K8W A;  2V5H A;  4NDR A;  2J0X A;  2CWW A;  3QVF A;  2BUF A;  4Q1T A;  3ZZI A;  3QUO A;  2JJ4 A;  1ZS7 A;  2J0W A;  1IT7 A;  3ZZF A;  2JJX A;  2BNF A;  4F6T A;  1OH9 A;  3D79 A;  4OLC A;  1IT8 A;  1ZL3 A;  3S6G A;  3LDF A;  4A7W A;  4DMG A;  2J5T A;  2W21 A;  3QUR A;  2AS0 A;  3U6U A;  4NDQ A;  3AB2 A;  3C1M A;  4JZ8 A;  3T7B A;  3LKK A;  3LL9 A;  4NDO B;  4JZ7 A;  1ZE2 A;  4JZ9 A;  1YBD A;  2BNE A;  4USJ A;  2HMF A;  3L86 A;  3K56 A;  4NDP A;  2CX0 A;  2J5V A;  3NWY A;  2B78 A;  4NDR B;  3TVI A;  2R8V A;  2BRI A;  2AB4 A;  2J4L A;  1B7B A;  2RD5 A;  3S6H A;  2CX1 A;  2VA1 A;  1SQW A;  1R3F A;  3KZF A;  3EK5 A;  2BMU A;  4KZT A;  4NDO A;  3C20 A;  4A7X A;  2WE4 A;  3C1N A;  3VSE A;  2AP9 A;  1T5Y A;  1WXX A;  3LL5 A;  2R98 A;  1ZE1 A;  2AKO A;  2J4K A;  3D2P A;  1GSJ A;  2BND A;  2P38 A;  2V4Y A;  4F6T B;  3L76 A;  1WXW A;  3EK6 A;  2A1F A;  3D40 A;  1IQ8 A;  1J2B A;  2E9Y A;  2CDQ A;  3QUN A;  4I49 A;  2BRX A;  3ZZG A;  1OHB A;  2IJ9 A;  2WE5 A;  1E19 A;  1OHA A;  3D2M A;  1GS5 A;  3K52 A;  4AB7 A;  2WXB A;  2J4J A;  2Q07 A;  4NDQ B;  1Z9D A;  2OGX B;  2BTY A;  2JI5 A;  3QVH A;  4NDP B;  1Q7H A;  2OGX A;  3D41 A;  3AAW A; 
#chains in the Genus database with same CATH topology
 4AXS A;  3S6K A;  3LJC A;  3K4O A;  3WWN A;  3C0K A;  1SGV A;  3WWM A;  3K4Y A;  3ZZH A;  1S04 A;  2EY4 A;  3UAI A;  1R3E A;  3B8G A;  2X2W A;  3M6U A;  3AB4 A;  1K8W A;  2V5H A;  4NDR A;  2J0X A;  2CWW A;  4CI3 B;  3QVF A;  2BUF A;  4Q1T A;  4CI2 B;  3QUO A;  3ZZI A;  2RFK A;  2JJ4 A;  1ZS7 A;  2J0W A;  2APO A;  1IT7 A;  3ZZF A;  2JJX A;  2BNF A;  3LWO A;  4F6T A;  2HVY A;  1OH9 A;  4CI1 B;  3HAX A;  2KKU A;  3D79 A;  4OLC A;  1IT8 A;  1ZL3 A;  3S6G A;  3LDF A;  4A7W A;  4DMG A;  2J5T A;  2W21 A;  3QUR A;  2AS0 A;  3U6U A;  4NDQ A;  3AB2 A;  3C1M A;  4JZ8 A;  4AB7 A;  3LWP A;  3T7B A;  3LKK A;  3LL9 A;  4NDO B;  4JZ7 A;  1ZE2 A;  3ZV0 C;  4JZ9 A;  3LWV A;  1YBD A;  2BNE A;  4TZ4 C;  4USJ A;  2HMF A;  3L86 A;  3K56 A;  4NDP A;  3M6X A;  2CX0 A;  2J5V A;  3NWY A;  2B78 A;  4NDR B;  3TVI A;  2R8V A;  2Z0T A;  2ANE A;  2BRI A;  2AB4 A;  3HJW A;  3U28 A;  2J4L A;  1B7B A;  3M6W A;  3M6V A;  2RD5 A;  1TE7 A;  3S6H A;  2CX1 A;  2VA1 A;  1SQW A;  1R3F A;  3KZF A;  3EK5 A;  2BMU A;  4KZT A;  1UOY A;  4NDO A;  3C20 A;  4A7X A;  2FRX A;  3M4X A;  2WE4 A;  3C1N A;  3MQK A;  1XNE A;  3VSE A;  2AP9 A;  3LWR A;  1T5Y A;  3HJY A;  1WXX A;  1WK2 A;  3LL5 A;  2R98 A;  1ZE1 A;  2AKO A;  2J4K A;  3D2P A;  1GSJ A;  2BND A;  2P38 A;  2V4Y A;  2AUS A;  4F6T B;  3L76 A;  1WXW A;  3EK6 A;  2A1F A;  3D40 A;  1IQ8 A;  3LWQ A;  1J2B A;  2E9Y A;  2CDQ A;  3M65 A;  3QUN A;  4I49 A;  2BRX A;  3ZZG A;  2E5O A;  1OHB A;  2IJ9 A;  2WE5 A;  1E19 A;  1OHA A;  3D2M A;  1GS5 A;  1ZBO A;  3K52 A;  2WXB A;  2J4J A;  2Q07 A;  2DP9 A;  4NDQ B;  3IUW A;  1Z9D A;  2OGX B;  2BTY A;  2JI5 A;  3QVH A;  4NDP B;  1Q7H A;  2OGX A;  3D41 A;  3AAW A; 
#chains in the Genus database with same CATH homology
 4AXS A;  3S6K A;  3WWN A;  3K4O A;  3C0K A;  1SGV A;  3WWM A;  3K4Y A;  3ZZH A;  3UAI A;  1R3E A;  3B8G A;  2X2W A;  3AB4 A;  1K8W A;  2V5H A;  4NDR A;  2J0X A;  2CWW A;  3QVF A;  2BUF A;  4Q1T A;  3ZZI A;  3QUO A;  2JJ4 A;  1ZS7 A;  2J0W A;  1IT7 A;  3ZZF A;  2JJX A;  2BNF A;  4F6T A;  1OH9 A;  3D79 A;  4OLC A;  1IT8 A;  1ZL3 A;  3S6G A;  3LDF A;  4A7W A;  4DMG A;  2J5T A;  2W21 A;  3QUR A;  2AS0 A;  3U6U A;  4NDQ A;  3AB2 A;  3C1M A;  4JZ8 A;  3T7B A;  3LKK A;  3LL9 A;  4NDO B;  4JZ7 A;  1ZE2 A;  4JZ9 A;  1YBD A;  2BNE A;  4USJ A;  2HMF A;  3L86 A;  3K56 A;  4NDP A;  2CX0 A;  2J5V A;  3NWY A;  2B78 A;  4NDR B;  3TVI A;  2R8V A;  2BRI A;  2AB4 A;  2J4L A;  1B7B A;  2RD5 A;  3S6H A;  2CX1 A;  2VA1 A;  1SQW A;  1R3F A;  3KZF A;  3EK5 A;  2BMU A;  4KZT A;  4NDO A;  3C20 A;  4A7X A;  2WE4 A;  3C1N A;  3VSE A;  2AP9 A;  1T5Y A;  1WXX A;  3LL5 A;  2R98 A;  1ZE1 A;  2AKO A;  2J4K A;  3D2P A;  1GSJ A;  2BND A;  2P38 A;  2V4Y A;  4F6T B;  3L76 A;  1WXW A;  3EK6 A;  2A1F A;  3D40 A;  1IQ8 A;  1J2B A;  2E9Y A;  2CDQ A;  3QUN A;  4I49 A;  2BRX A;  3ZZG A;  1OHB A;  2IJ9 A;  2WE5 A;  1E19 A;  1OHA A;  3D2M A;  1GS5 A;  3K52 A;  4AB7 A;  2WXB A;  2J4J A;  2Q07 A;  4NDQ B;  1Z9D A;  2OGX B;  2BTY A;  2JI5 A;  3QVH A;  4NDP B;  1Q7H A;  2OGX A;  3D41 A;  3AAW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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