4Q1TA

Crystal structure of a glutamate 5-kinase from burkholderia thailandensis
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
372
structure length
340
Chain Sequence
b'MRSIIADSKRLVVKVGSSLVTNGLDHDAIGRWAAQIAALRNEGKEVVLVSSGAIAEGMQRLGWSRRPREIDELQAAAAVGQMGLAQVYESRFAEHGIRTAQILLTHADLADRERYLNARSTLLTLLRLGVVPIINENDTVVTDEIKDNDTLGALVANLIEGDALIILTDQQGLLVAEASAGAPELMLTKILAAKRAAHSGANTVIASGRERDVLLRLASGEAIGTQLIARTARMAARKQWMADHLQVRGHVVIDAGAVDKLTAGGKSLLPIGVVAVQGVFARGEVIACVNDAGREVARGITNYSSAEAKLIQRKPSGEIEAVLGYMLEPELIHRDNLVLV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Glutamate 5-kinase
publication title Crystal structure of a glutamate 5-kinase from Burkholderia thailandensis
rcsb
source organism Burkholderia thailandensis
molecule tags Transferase
total genus 114
structure length 340
sequence length 372
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.11: Glutamate 5-kinase.
pdb deposition date 2014-04-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
A PF01472 PUA PUA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 4q1tA02
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4q1tA01
2P38A 3ZZIA 2JJ4A 4A7XA 3AAWA 4NDRA 2OGXB 3TVIA 3S6HA 3T7BA 1IQ8A 3U6UA 2JI5A 2WE4A 4NDQB 2Q07A 2BNEA 4JZ7A 3S6KA 2J5VA 3EK5A 2V5HA 3KZFA 3K52A 2BNFA 3ZZFA 2JJXA 1T5YA 2X2WA 4NDPA 3B8GA 1Z9DA 3LL9A 3QUOA 2R98A 2BUFA 1J2BA 2R8VA 3C20A 3D2PA 3S6GA 2HMFA 1OH9A 1WXWA 3NWYA 4AXSA 4NDRB 4KZTA 3D79A 2AP9A 4A7WA 2J0WA 3K4YA 3D40A 4I49A 1OHAA 3EK6A 1GS5A 2B78A 3LDFA 3VSEA 3QUNA 1R3EA 2A1FA 2J4KA 3LL5A 2VA1A 3C0KA 2E9YA 4F6TA 2IJ9A 4NDPB 1ZL3A 4OLCA 1SGVA 1E19A 2BMUA 1ZE1A 2RD5A 2AKOA 2CWWA 3WWMA 4NDOA 4DMGA 2J5TA 2CDQA 1Q7HA 2BNDA 3QURA 1ZS7A 4JZ9A 3K56A 3UAIA 3WWNA 1YBDA 2WXBA 3AB4A 3ZZGA 3QVFA 2AB4A 1GSJA 2J4JA 1WXXA 1SQWA 2OGXA 3K4OA 2V4YA 1R3FA 3C1NA 1ZE2A 4AB7A 4F6TB 3LKKA 4USJA 4JZ8A 2AS0A 4NDQA 3ZZHA 2BTYA 4Q1TA 1IT7A 2CX1A 3L86A 3D2MA 2J4LA 3C1MA 3D41A 1OHBA 2WE5A 4NDOB 2BRIA 2BRXA 1K8WA 3AB2A 1IT8A 3QVHA 3L76A 2CX0A 1B7BA 2J0XA 2W21A
chains in the Genus database with same CATH superfamily
2P38A 2KKUA 3ZZIA 2JJ4A 2E5OA 4A7XA 3AAWA 4NDRA 2OGXB 3TVIA 3S6HA 3T7BA 1IQ8A 3IUWA 3U6UA 4CI2B 2JI5A 2WE4A 2HVYA 4NDQB 2Q07A 2BNEA 4JZ7A 3S6KA 2J5VA 3EK5A 3M4XA 2V5HA 3KZFA 3LWVA 3K52A 2BNFA 3ZZFA 2JJXA 1T5YA 2X2WA 4NDPA 2Z0TA 2DP9A 3B8GA 3M6WA 1Z9DA 3LL9A 3QUOA 2R98A 3M6VA 1J2BA 2BUFA 2R8VA 3C20A 3D2PA 3S6GA 3LWPA 2HMFA 1OH9A 1WXWA 3NWYA 1ZBOA 4AXSA 4NDRB 4KZTA 3D79A 2AP9A 4A7WA 2J0WA 3M65A 3K4YA 3D40A 4I49A 1OHAA 2ANEA 3EK6A 4CI1B 1GS5A 2AUSA 3LWRA 2B78A 3LDFA 3VSEA 3QUNA 1R3EA 2A1FA 2J4KA 3LL5A 1S04A 2VA1A 3C0KA 2E9YA 1UOYA 4F6TA 2IJ9A 4NDPB 1ZL3A 1XNEA 4OLCA 3MQKA 1SGVA 3LWQA 1E19A 2BMUA 1ZE1A 2RD5A 3LWOA 1TE7A 2AKOA 2CWWA 3M6XA 3ZV0C 3WWMA 3LJCA 4NDOA 3HJWA 4DMGA 2J5TA 2CDQA 1Q7HA 2BNDA 3QURA 1ZS7A 3M6UA 4JZ9A 3K56A 3UAIA 1WK2A 2APOA 3WWNA 1YBDA 2WXBA 3AB4A 3ZZGA 3QVFA 2AB4A 1GSJA 4CI3B 2J4JA 1WXXA 3U28A 1SQWA 2OGXA 3K4OA 2V4YA 1R3FA 4TZ4C 3C1NA 1ZE2A 4AB7A 4F6TB 3LKKA 4USJA 2RFKA 4JZ8A 2AS0A 4NDQA 3ZZHA 2BTYA 4Q1TA 1IT7A 2CX1A 3L86A 3D2MA 2J4LA 3C1MA 3D41A 2EY4A 1OHBA 2WE5A 4NDOB 2BRIA 2BRXA 1K8WA 3AB2A 1IT8A 3HAXA 3QVHA 3HJYA 3L76A 2CX0A 2FRXA 1B7BA 2J0XA 2W21A
chains in the Genus database with same CATH topology
2P38A 3ZZIA 2JJ4A 4A7XA 3AAWA 4NDRA 2OGXB 3TVIA 3S6HA 3T7BA 1IQ8A 3U6UA 2JI5A 2WE4A 4NDQB 2Q07A 2BNEA 4JZ7A 3S6KA 2J5VA 3EK5A 2V5HA 3KZFA 3K52A 2BNFA 3ZZFA 2JJXA 1T5YA 2X2WA 4NDPA 3B8GA 1Z9DA 3LL9A 3QUOA 2R98A 2BUFA 1J2BA 2R8VA 3C20A 3D2PA 3S6GA 2HMFA 1OH9A 1WXWA 3NWYA 4AXSA 4NDRB 4KZTA 3D79A 2AP9A 4A7WA 2J0WA 3K4YA 3D40A 4I49A 1OHAA 3EK6A 1GS5A 2B78A 3LDFA 3VSEA 3QUNA 1R3EA 2A1FA 2J4KA 3LL5A 2VA1A 3C0KA 2E9YA 4F6TA 2IJ9A 4NDPB 1ZL3A 4OLCA 1SGVA 1E19A 2BMUA 1ZE1A 2RD5A 2AKOA 2CWWA 3WWMA 4NDOA 4DMGA 2J5TA 2CDQA 1Q7HA 2BNDA 3QURA 1ZS7A 4JZ9A 3K56A 3UAIA 3WWNA 1YBDA 2WXBA 3AB4A 3ZZGA 3QVFA 2AB4A 1GSJA 2J4JA 1WXXA 1SQWA 2OGXA 3K4OA 2V4YA 1R3FA 3C1NA 1ZE2A 4AB7A 4F6TB 3LKKA 4USJA 4JZ8A 2AS0A 4NDQA 3ZZHA 2BTYA 4Q1TA 1IT7A 2CX1A 3L86A 3D2MA 2J4LA 3C1MA 3D41A 1OHBA 2WE5A 4NDOB 2BRIA 2BRXA 1K8WA 3AB2A 1IT8A 3QVHA 3L76A 2CX0A 1B7BA 2J0XA 2W21A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P38 A;  3ZZI A;  2JJ4 A;  4A7X A;  3AAW A;  4NDR A;  2OGX B;  3TVI A;  3S6H A;  3T7B A;  1IQ8 A;  3U6U A;  2JI5 A;  2WE4 A;  4NDQ B;  2Q07 A;  2BNE A;  4JZ7 A;  3S6K A;  2J5V A;  3EK5 A;  2V5H A;  3KZF A;  3K52 A;  2BNF A;  3ZZF A;  2JJX A;  1T5Y A;  2X2W A;  4NDP A;  3B8G A;  1Z9D A;  3LL9 A;  3QUO A;  2R98 A;  2BUF A;  1J2B A;  2R8V A;  3C20 A;  3D2P A;  3S6G A;  2HMF A;  1OH9 A;  1WXW A;  3NWY A;  4AXS A;  4NDR B;  4KZT A;  3D79 A;  2AP9 A;  4A7W A;  2J0W A;  3K4Y A;  3D40 A;  4I49 A;  1OHA A;  3EK6 A;  1GS5 A;  2B78 A;  3LDF A;  3VSE A;  3QUN A;  1R3E A;  2A1F A;  2J4K A;  3LL5 A;  2VA1 A;  3C0K A;  2E9Y A;  4F6T A;  2IJ9 A;  4NDP B;  1ZL3 A;  4OLC A;  1SGV A;  1E19 A;  2BMU A;  1ZE1 A;  2RD5 A;  2AKO A;  2CWW A;  3WWM A;  4NDO A;  4DMG A;  2J5T A;  2CDQ A;  1Q7H A;  2BND A;  3QUR A;  1ZS7 A;  4JZ9 A;  3K56 A;  3UAI A;  3WWN A;  1YBD A;  2WXB A;  3AB4 A;  3ZZG A;  3QVF A;  2AB4 A;  1GSJ A;  2J4J A;  1WXX A;  1SQW A;  2OGX A;  3K4O A;  2V4Y A;  1R3F A;  3C1N A;  1ZE2 A;  4AB7 A;  4F6T B;  3LKK A;  4USJ A;  4JZ8 A;  2AS0 A;  4NDQ A;  3ZZH A;  2BTY A;  4Q1T A;  1IT7 A;  2CX1 A;  3L86 A;  3D2M A;  2J4L A;  3C1M A;  3D41 A;  1OHB A;  2WE5 A;  4NDO B;  2BRI A;  2BRX A;  1K8W A;  3AB2 A;  1IT8 A;  3QVH A;  3L76 A;  2CX0 A;  1B7B A;  2J0X A;  2W21 A; 
#chains in the Genus database with same CATH topology
 2P38 A;  2KKU A;  3ZZI A;  2JJ4 A;  2E5O A;  4A7X A;  3AAW A;  4NDR A;  2OGX B;  3TVI A;  3S6H A;  3T7B A;  1IQ8 A;  3IUW A;  3U6U A;  4CI2 B;  2JI5 A;  2WE4 A;  2HVY A;  4NDQ B;  2Q07 A;  2BNE A;  4JZ7 A;  3S6K A;  2J5V A;  3EK5 A;  3M4X A;  2V5H A;  3KZF A;  3LWV A;  3K52 A;  2BNF A;  3ZZF A;  2JJX A;  1T5Y A;  2X2W A;  4NDP A;  2Z0T A;  2DP9 A;  3B8G A;  3M6W A;  1Z9D A;  3LL9 A;  3QUO A;  2R98 A;  3M6V A;  1J2B A;  2BUF A;  2R8V A;  3C20 A;  3D2P A;  3S6G A;  3LWP A;  2HMF A;  1OH9 A;  1WXW A;  3NWY A;  1ZBO A;  4AXS A;  4NDR B;  4KZT A;  3D79 A;  2AP9 A;  4A7W A;  2J0W A;  3M65 A;  3K4Y A;  3D40 A;  4I49 A;  1OHA A;  2ANE A;  3EK6 A;  4CI1 B;  1GS5 A;  2AUS A;  3LWR A;  2B78 A;  3LDF A;  3VSE A;  3QUN A;  1R3E A;  2A1F A;  2J4K A;  3LL5 A;  1S04 A;  2VA1 A;  3C0K A;  2E9Y A;  1UOY A;  4F6T A;  2IJ9 A;  4NDP B;  1ZL3 A;  1XNE A;  4OLC A;  3MQK A;  1SGV A;  3LWQ A;  1E19 A;  2BMU A;  1ZE1 A;  2RD5 A;  3LWO A;  1TE7 A;  2AKO A;  2CWW A;  3M6X A;  3ZV0 C;  3WWM A;  3LJC A;  4NDO A;  3HJW A;  4DMG A;  2J5T A;  2CDQ A;  1Q7H A;  2BND A;  3QUR A;  1ZS7 A;  3M6U A;  4JZ9 A;  3K56 A;  3UAI A;  1WK2 A;  2APO A;  3WWN A;  1YBD A;  2WXB A;  3AB4 A;  3ZZG A;  3QVF A;  2AB4 A;  1GSJ A;  4CI3 B;  2J4J A;  1WXX A;  3U28 A;  1SQW A;  2OGX A;  3K4O A;  2V4Y A;  1R3F A;  4TZ4 C;  3C1N A;  1ZE2 A;  4AB7 A;  4F6T B;  3LKK A;  4USJ A;  2RFK A;  4JZ8 A;  2AS0 A;  4NDQ A;  3ZZH A;  2BTY A;  4Q1T A;  1IT7 A;  2CX1 A;  3L86 A;  3D2M A;  2J4L A;  3C1M A;  3D41 A;  2EY4 A;  1OHB A;  2WE5 A;  4NDO B;  2BRI A;  2BRX A;  1K8W A;  3AB2 A;  1IT8 A;  3HAX A;  3QVH A;  3HJY A;  3L76 A;  2CX0 A;  2FRX A;  1B7B A;  2J0X A;  2W21 A; 
#chains in the Genus database with same CATH homology
 2P38 A;  3ZZI A;  2JJ4 A;  4A7X A;  3AAW A;  4NDR A;  2OGX B;  3TVI A;  3S6H A;  3T7B A;  1IQ8 A;  3U6U A;  2JI5 A;  2WE4 A;  4NDQ B;  2Q07 A;  2BNE A;  4JZ7 A;  3S6K A;  2J5V A;  3EK5 A;  2V5H A;  3KZF A;  3K52 A;  2BNF A;  3ZZF A;  2JJX A;  1T5Y A;  2X2W A;  4NDP A;  3B8G A;  1Z9D A;  3LL9 A;  3QUO A;  2R98 A;  2BUF A;  1J2B A;  2R8V A;  3C20 A;  3D2P A;  3S6G A;  2HMF A;  1OH9 A;  1WXW A;  3NWY A;  4AXS A;  4NDR B;  4KZT A;  3D79 A;  2AP9 A;  4A7W A;  2J0W A;  3K4Y A;  3D40 A;  4I49 A;  1OHA A;  3EK6 A;  1GS5 A;  2B78 A;  3LDF A;  3VSE A;  3QUN A;  1R3E A;  2A1F A;  2J4K A;  3LL5 A;  2VA1 A;  3C0K A;  2E9Y A;  4F6T A;  2IJ9 A;  4NDP B;  1ZL3 A;  4OLC A;  1SGV A;  1E19 A;  2BMU A;  1ZE1 A;  2RD5 A;  2AKO A;  2CWW A;  3WWM A;  4NDO A;  4DMG A;  2J5T A;  2CDQ A;  1Q7H A;  2BND A;  3QUR A;  1ZS7 A;  4JZ9 A;  3K56 A;  3UAI A;  3WWN A;  1YBD A;  2WXB A;  3AB4 A;  3ZZG A;  3QVF A;  2AB4 A;  1GSJ A;  2J4J A;  1WXX A;  1SQW A;  2OGX A;  3K4O A;  2V4Y A;  1R3F A;  3C1N A;  1ZE2 A;  4AB7 A;  4F6T B;  3LKK A;  4USJ A;  4JZ8 A;  2AS0 A;  4NDQ A;  3ZZH A;  2BTY A;  4Q1T A;  1IT7 A;  2CX1 A;  3L86 A;  3D2M A;  2J4L A;  3C1M A;  3D41 A;  1OHB A;  2WE5 A;  4NDO B;  2BRI A;  2BRX A;  1K8W A;  3AB2 A;  1IT8 A;  3QVH A;  3L76 A;  2CX0 A;  1B7B A;  2J0X A;  2W21 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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