2J5TA

Glutamate 5-kinase from escherichia coli complexed with glutamate
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
365
structure length
355
Chain Sequence
b'DSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords GLUTAMATE 5-KINASE
publication title A Novel Two-Domain Architecture within the Amino Acid Kinase Enzyme Family Revealed by the Crystal Structure of Escherichia Coli Glutamate 5-Kinase.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Transferase
total genus 115
structure length 355
sequence length 365
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 2.7.2.11: Glutamate 5-kinase.
pdb deposition date 2006-09-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
A PF01472 PUA PUA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 2j5tA02
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j5tA01
3D41A 2IJ9A 4USJA 3K56A 2CDQA 2BRIA 1B7BA 1GS5A 1OHAA 2J4LA 3VSEA 2JJ4A 2BNFA 3LKKA 1E19A 4NDQB 3C1MA 4Q1TA 4NDQA 4F6TA 2A1FA 2WXBA 2JI5A 1R3EA 2R8VA 3UAIA 3EK6A 2B78A 1SGVA 3AB2A 4A7XA 3L76A 3S6GA 1SQWA 2AP9A 2HMFA 2BNDA 3QVFA 2AS0A 2BRXA 4AXSA 1ZS7A 1OHBA 3D40A 3QUOA 2AB4A 4JZ7A 2X2WA 4F6TB 1WXWA 3C0KA 2Q07A 2JJXA 2WE4A 3S6HA 3T7BA 4NDOB 2J0XA 4NDOA 3WWNA 2R98A 1IT7A 2WE5A 4KZTA 2AKOA 3ZZGA 2V5HA 1ZE2A 1YBDA 2V4YA 3NWYA 3K52A 4NDRB 4OLCA 4NDRA 3C20A 2J5TA 2CX1A 3ZZIA 2BTYA 3ZZFA 1Q7HA 2W21A 1T5YA 3AB4A 3KZFA 1ZE1A 2CWWA 3EK5A 3LL9A 2BNEA 3QVHA 4JZ8A 3WWMA 2E9YA 1K8WA 1IT8A 1IQ8A 3L86A 2J0WA 1ZL3A 2OGXB 1GSJA 3K4YA 3QURA 1Z9DA 4NDPB 3TVIA 3D2PA 2OGXA 2P38A 4NDPA 2BUFA 3QUNA 3C1NA 4JZ9A 1WXXA 3AAWA 2BMUA 2RD5A 3D79A 1J2BA 3D2MA 3U6UA 2VA1A 2CX0A 4DMGA 2J5VA 2J4KA 4A7WA 3ZZHA 3LL5A 1R3FA 4I49A 3K4OA 3S6KA 3LDFA 3B8GA 4AB7A 1OH9A 2J4JA
chains in the Genus database with same CATH superfamily
3D41A 2IJ9A 4USJA 3K56A 2CDQA 2BRIA 1B7BA 1GS5A 1OHAA 2J4LA 3VSEA 2JJ4A 2BNFA 2EY4A 3LKKA 1E19A 1S04A 3LWQA 4NDQB 3C1MA 4Q1TA 3HJYA 4NDQA 4F6TA 2AUSA 2A1FA 2WXBA 2JI5A 1R3EA 2R8VA 4CI3B 3UAIA 3ZV0C 3IUWA 3EK6A 4TZ4C 2B78A 3M4XA 3MQKA 1SGVA 3AB2A 3HAXA 2DP9A 4A7XA 3L76A 3S6GA 1SQWA 2AP9A 2HMFA 2BNDA 3QVFA 2AS0A 2BRXA 4AXSA 1ZS7A 1OHBA 3D40A 3QUOA 2AB4A 4JZ7A 3LWPA 2X2WA 4CI2B 4F6TB 1WXWA 3C0KA 2Q07A 2JJXA 2WE4A 3M6VA 2E5OA 2APOA 3M65A 4NDOB 3S6HA 3T7BA 1XNEA 3M6WA 2J0XA 4NDOA 3WWNA 2R98A 1IT7A 2WE5A 4KZTA 2AKOA 3ZZGA 3LWVA 2V5HA 1ZE2A 1YBDA 2V4YA 3LJCA 3NWYA 4CI1B 3K52A 4NDRB 1OH9A 3M6UA 2KKUA 4OLCA 4NDRA 3C20A 2CX1A 2J5TA 3ZZIA 2BTYA 3ZZFA 1Q7HA 2W21A 1T5YA 2FRXA 3AB4A 3KZFA 1TE7A 1ZE1A 2CWWA 1UOYA 3EK5A 3LL9A 2BNEA 3QVHA 4JZ8A 3WWMA 2E9YA 3LWRA 1K8WA 1IT8A 1ZBOA 1IQ8A 3L86A 2J0WA 1ZL3A 2OGXB 1GSJA 3K4YA 3QURA 1Z9DA 4NDPB 3TVIA 2RFKA 3D2PA 2OGXA 2P38A 1WK2A 2Z0TA 4NDPA 3HJWA 2BUFA 3QUNA 3C1NA 4JZ9A 1WXXA 3AAWA 2BMUA 2RD5A 3U28A 2ANEA 3D79A 1J2BA 3D2MA 3U6UA 3M6XA 2VA1A 2CX0A 4DMGA 2J5VA 2J4KA 4A7WA 3ZZHA 3LL5A 1R3FA 4I49A 3K4OA 3S6KA 3LDFA 3B8GA 4AB7A 3LWOA 2J4JA 2HVYA
chains in the Genus database with same CATH topology
3D41A 2IJ9A 4USJA 3K56A 2CDQA 2BRIA 1B7BA 1GS5A 1OHAA 2J4LA 3VSEA 2JJ4A 2BNFA 3LKKA 1E19A 4NDQB 3C1MA 4Q1TA 4NDQA 4F6TA 2A1FA 2WXBA 2JI5A 1R3EA 2R8VA 3UAIA 3EK6A 2B78A 1SGVA 3AB2A 4A7XA 3L76A 3S6GA 1SQWA 2AP9A 2HMFA 2BNDA 3QVFA 2AS0A 2BRXA 4AXSA 1ZS7A 1OHBA 3D40A 3QUOA 2AB4A 4JZ7A 2X2WA 4F6TB 1WXWA 3C0KA 2Q07A 2JJXA 2WE4A 3S6HA 3T7BA 4NDOB 2J0XA 4NDOA 3WWNA 2R98A 1IT7A 2WE5A 4KZTA 2AKOA 3ZZGA 2V5HA 1ZE2A 1YBDA 2V4YA 3NWYA 3K52A 4NDRB 4OLCA 4NDRA 3C20A 2J5TA 2CX1A 3ZZIA 2BTYA 3ZZFA 1Q7HA 2W21A 1T5YA 3AB4A 3KZFA 1ZE1A 2CWWA 3EK5A 3LL9A 2BNEA 3QVHA 4JZ8A 3WWMA 2E9YA 1K8WA 1IT8A 1IQ8A 3L86A 2J0WA 1ZL3A 2OGXB 1GSJA 3K4YA 3QURA 1Z9DA 4NDPB 3TVIA 3D2PA 2OGXA 2P38A 4NDPA 2BUFA 3QUNA 3C1NA 4JZ9A 1WXXA 3AAWA 2BMUA 2RD5A 3D79A 1J2BA 3D2MA 3U6UA 2VA1A 2CX0A 4DMGA 2J5VA 2J4KA 4A7WA 3ZZHA 3LL5A 1R3FA 4I49A 3K4OA 3S6KA 3LDFA 3B8GA 4AB7A 1OH9A 2J4JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D41 A;  2IJ9 A;  4USJ A;  3K56 A;  2CDQ A;  2BRI A;  1B7B A;  1GS5 A;  1OHA A;  2J4L A;  3VSE A;  2JJ4 A;  2BNF A;  3LKK A;  1E19 A;  4NDQ B;  3C1M A;  4Q1T A;  4NDQ A;  4F6T A;  2A1F A;  2WXB A;  2JI5 A;  1R3E A;  2R8V A;  3UAI A;  3EK6 A;  2B78 A;  1SGV A;  3AB2 A;  4A7X A;  3L76 A;  3S6G A;  1SQW A;  2AP9 A;  2HMF A;  2BND A;  3QVF A;  2AS0 A;  2BRX A;  4AXS A;  1ZS7 A;  1OHB A;  3D40 A;  3QUO A;  2AB4 A;  4JZ7 A;  2X2W A;  4F6T B;  1WXW A;  3C0K A;  2Q07 A;  2JJX A;  2WE4 A;  3S6H A;  3T7B A;  4NDO B;  2J0X A;  4NDO A;  3WWN A;  2R98 A;  1IT7 A;  2WE5 A;  4KZT A;  2AKO A;  3ZZG A;  2V5H A;  1ZE2 A;  1YBD A;  2V4Y A;  3NWY A;  3K52 A;  4NDR B;  4OLC A;  4NDR A;  3C20 A;  2J5T A;  2CX1 A;  3ZZI A;  2BTY A;  3ZZF A;  1Q7H A;  2W21 A;  1T5Y A;  3AB4 A;  3KZF A;  1ZE1 A;  2CWW A;  3EK5 A;  3LL9 A;  2BNE A;  3QVH A;  4JZ8 A;  3WWM A;  2E9Y A;  1K8W A;  1IT8 A;  1IQ8 A;  3L86 A;  2J0W A;  1ZL3 A;  2OGX B;  1GSJ A;  3K4Y A;  3QUR A;  1Z9D A;  4NDP B;  3TVI A;  3D2P A;  2OGX A;  2P38 A;  4NDP A;  2BUF A;  3QUN A;  3C1N A;  4JZ9 A;  1WXX A;  3AAW A;  2BMU A;  2RD5 A;  3D79 A;  1J2B A;  3D2M A;  3U6U A;  2VA1 A;  2CX0 A;  4DMG A;  2J5V A;  2J4K A;  4A7W A;  3ZZH A;  3LL5 A;  1R3F A;  4I49 A;  3K4O A;  3S6K A;  3LDF A;  3B8G A;  4AB7 A;  1OH9 A;  2J4J A; 
#chains in the Genus database with same CATH topology
 3D41 A;  2IJ9 A;  4USJ A;  3K56 A;  2CDQ A;  2BRI A;  1B7B A;  1GS5 A;  1OHA A;  2J4L A;  3VSE A;  2JJ4 A;  2BNF A;  2EY4 A;  3LKK A;  1E19 A;  1S04 A;  3LWQ A;  4NDQ B;  3C1M A;  4Q1T A;  3HJY A;  4NDQ A;  4F6T A;  2AUS A;  2A1F A;  2WXB A;  2JI5 A;  1R3E A;  2R8V A;  4CI3 B;  3UAI A;  3ZV0 C;  3IUW A;  3EK6 A;  4TZ4 C;  2B78 A;  3M4X A;  3MQK A;  1SGV A;  3AB2 A;  3HAX A;  2DP9 A;  4A7X A;  3L76 A;  3S6G A;  1SQW A;  2AP9 A;  2HMF A;  2BND A;  3QVF A;  2AS0 A;  2BRX A;  4AXS A;  1ZS7 A;  1OHB A;  3D40 A;  3QUO A;  2AB4 A;  4JZ7 A;  3LWP A;  2X2W A;  4CI2 B;  4F6T B;  1WXW A;  3C0K A;  2Q07 A;  2JJX A;  2WE4 A;  3M6V A;  2E5O A;  2APO A;  3M65 A;  4NDO B;  3S6H A;  3T7B A;  1XNE A;  3M6W A;  2J0X A;  4NDO A;  3WWN A;  2R98 A;  1IT7 A;  2WE5 A;  4KZT A;  2AKO A;  3ZZG A;  3LWV A;  2V5H A;  1ZE2 A;  1YBD A;  2V4Y A;  3LJC A;  3NWY A;  4CI1 B;  3K52 A;  4NDR B;  1OH9 A;  3M6U A;  2KKU A;  4OLC A;  4NDR A;  3C20 A;  2CX1 A;  2J5T A;  3ZZI A;  2BTY A;  3ZZF A;  1Q7H A;  2W21 A;  1T5Y A;  2FRX A;  3AB4 A;  3KZF A;  1TE7 A;  1ZE1 A;  2CWW A;  1UOY A;  3EK5 A;  3LL9 A;  2BNE A;  3QVH A;  4JZ8 A;  3WWM A;  2E9Y A;  3LWR A;  1K8W A;  1IT8 A;  1ZBO A;  1IQ8 A;  3L86 A;  2J0W A;  1ZL3 A;  2OGX B;  1GSJ A;  3K4Y A;  3QUR A;  1Z9D A;  4NDP B;  3TVI A;  2RFK A;  3D2P A;  2OGX A;  2P38 A;  1WK2 A;  2Z0T A;  4NDP A;  3HJW A;  2BUF A;  3QUN A;  3C1N A;  4JZ9 A;  1WXX A;  3AAW A;  2BMU A;  2RD5 A;  3U28 A;  2ANE A;  3D79 A;  1J2B A;  3D2M A;  3U6U A;  3M6X A;  2VA1 A;  2CX0 A;  4DMG A;  2J5V A;  2J4K A;  4A7W A;  3ZZH A;  3LL5 A;  1R3F A;  4I49 A;  3K4O A;  3S6K A;  3LDF A;  3B8G A;  4AB7 A;  3LWO A;  2J4J A;  2HVY A; 
#chains in the Genus database with same CATH homology
 3D41 A;  2IJ9 A;  4USJ A;  3K56 A;  2CDQ A;  2BRI A;  1B7B A;  1GS5 A;  1OHA A;  2J4L A;  3VSE A;  2JJ4 A;  2BNF A;  3LKK A;  1E19 A;  4NDQ B;  3C1M A;  4Q1T A;  4NDQ A;  4F6T A;  2A1F A;  2WXB A;  2JI5 A;  1R3E A;  2R8V A;  3UAI A;  3EK6 A;  2B78 A;  1SGV A;  3AB2 A;  4A7X A;  3L76 A;  3S6G A;  1SQW A;  2AP9 A;  2HMF A;  2BND A;  3QVF A;  2AS0 A;  2BRX A;  4AXS A;  1ZS7 A;  1OHB A;  3D40 A;  3QUO A;  2AB4 A;  4JZ7 A;  2X2W A;  4F6T B;  1WXW A;  3C0K A;  2Q07 A;  2JJX A;  2WE4 A;  3S6H A;  3T7B A;  4NDO B;  2J0X A;  4NDO A;  3WWN A;  2R98 A;  1IT7 A;  2WE5 A;  4KZT A;  2AKO A;  3ZZG A;  2V5H A;  1ZE2 A;  1YBD A;  2V4Y A;  3NWY A;  3K52 A;  4NDR B;  4OLC A;  4NDR A;  3C20 A;  2J5T A;  2CX1 A;  3ZZI A;  2BTY A;  3ZZF A;  1Q7H A;  2W21 A;  1T5Y A;  3AB4 A;  3KZF A;  1ZE1 A;  2CWW A;  3EK5 A;  3LL9 A;  2BNE A;  3QVH A;  4JZ8 A;  3WWM A;  2E9Y A;  1K8W A;  1IT8 A;  1IQ8 A;  3L86 A;  2J0W A;  1ZL3 A;  2OGX B;  1GSJ A;  3K4Y A;  3QUR A;  1Z9D A;  4NDP B;  3TVI A;  3D2P A;  2OGX A;  2P38 A;  4NDP A;  2BUF A;  3QUN A;  3C1N A;  4JZ9 A;  1WXX A;  3AAW A;  2BMU A;  2RD5 A;  3D79 A;  1J2B A;  3D2M A;  3U6U A;  2VA1 A;  2CX0 A;  4DMG A;  2J5V A;  2J4K A;  4A7W A;  3ZZH A;  3LL5 A;  1R3F A;  4I49 A;  3K4O A;  3S6K A;  3LDF A;  3B8G A;  4AB7 A;  1OH9 A;  2J4J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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