The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
115
|
sequence length |
365
|
structure length |
355
|
Chain Sequence |
DSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transferase
|
| molecule keywords |
GLUTAMATE 5-KINASE
|
| publication title |
A Novel Two-Domain Architecture within the Amino Acid Kinase Enzyme Family Revealed by the Crystal Structure of Escherichia Coli Glutamate 5-Kinase.
pubmed doi rcsb |
| source organism |
Escherichia coli
|
| total genus |
115
|
| structure length |
355
|
| sequence length |
365
|
| chains with identical sequence |
B, C, D, E, F, G, H
|
| ec nomenclature |
ec
2.7.2.11: Glutamate 5-kinase. |
| pdb deposition date | 2006-09-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00696 | AA_kinase | Amino acid kinase family |
| A | PF01472 | PUA | PUA domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 | PUA domain | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Carbamate kinase | Acetylglutamate kinase-like |
#chains in the Genus database with same CATH superfamily 2V5H A; 2VA1 A; 3C1M A; 4AXS A; 4USJ A; 1OHA A; 2BUF A; 2P38 A; 1SGV A; 2X2W A; 1T5Y A; 2BNE A; 3D79 A; 3B8G A; 3D2P A; 1Z9D A; 1ZS7 A; 2R8V A; 3EK5 A; 3EK6 A; 1R3E A; 3QVH A; 2JJ4 A; 3K52 A; 2Q07 A; 3NWY A; 3D41 A; 3LDF A; 2J0W A; 2CX0 A; 2WE4 A; 3K4Y A; 3AAW A; 2W21 A; 2OGX B; 2OGX A; 2AB4 A; 2J0X A; 3LL5 A; 1B7B A; 2E9Y A; 1WXX A; 2BRI A; 3U6U A; 4KZT A; 3WWN A; 2WXB A; 2CX1 A; 1ZE2 A; 3LKK A; 3AB2 A; 2B78 A; 1IQ8 A; 2J4J A; 3S6H A; 3D40 A; 1E19 A; 3C0K A; 3K4O A; 3K56 A; 3KZF A; 3S6K A; 3QUO A; 1ZL3 A; 4JZ8 A; 3ZZF A; 2AP9 A; 4NDO B; 2CDQ A; 3QUN A; 4NDO A; 1YBD A; 4F6T B; 2J4K A; 2J5V A; 2IJ9 A; 4NDP B; 3UAI A; 4F6T A; 4I49 A; 1K8W A; 4NDP A; 2CWW A; 3C20 A; 3L86 A; 3LL9 A; 4AB7 A; 4DMG A; 3T7B A; 2JJX A; 2BRX A; 3ZZH A; 2BMU A; 3ZZG A; 2RD5 A; 1IT7 A; 4NDR B; 4Q1T A; 2JI5 A; 4OLC A; 1IT8 A; 4NDR A; 2J5T A; 3QVF A; 1R3F A; 1WXW A; 1OH9 A; 2AS0 A; 2HMF A; 3AB4 A; 3ZZI A; 4A7X A; 4JZ7 A; 2BND A; 2J4L A; 1J2B A; 1ZE1 A; 2R98 A; 2BTY A; 3VSE A; 1GSJ A; 3WWM A; 2V4Y A; 2A1F A; 2AKO A; 4A7W A; 4NDQ B; 1GS5 A; 2WE5 A; 4NDQ A; 1OHB A; 4JZ9 A; 3QUR A; 3D2M A; 1Q7H A; 3L76 A; 3TVI A; 1SQW A; 3S6G A; 3C1N A; 2BNF A; #chains in the Genus database with same CATH topology 3HAX A; 2V5H A; 2HVY A; 2VA1 A; 3C1M A; 4AXS A; 4USJ A; 1OHA A; 3IUW A; 2BUF A; 2P38 A; 1SGV A; 2X2W A; 1T5Y A; 2BNE A; 4TZ4 C; 1TE7 A; 3D79 A; 3B8G A; 3D2P A; 1Z9D A; 1ZS7 A; 2R8V A; 3EK5 A; 3EK6 A; 1R3E A; 3QVH A; 3LJC A; 2JJ4 A; 3K52 A; 2Q07 A; 3NWY A; 3D41 A; 2APO A; 3LDF A; 2CX0 A; 2J0W A; 2WE4 A; 3K4Y A; 2DP9 A; 3AAW A; 2W21 A; 2OGX B; 3LWO A; 2FRX A; 2Z0T A; 2AB4 A; 2J0X A; 2OGX A; 3LL5 A; 1B7B A; 2E9Y A; 1WXX A; 2BRI A; 1XNE A; 3U6U A; 4CI3 B; 4KZT A; 3WWN A; 2WXB A; 2CX1 A; 1ZE2 A; 3LKK A; 1UOY A; 2B78 A; 3AB2 A; 1IQ8 A; 3U28 A; 2J4J A; 3S6H A; 1S04 A; 3D40 A; 1E19 A; 3C0K A; 3K4O A; 3M6U A; 3K56 A; 3M65 A; 3KZF A; 3S6K A; 3LWQ A; 3QUO A; 1ZL3 A; 4JZ8 A; 3ZZF A; 2E5O A; 4CI2 B; 2AP9 A; 2CDQ A; 4NDO B; 3QUN A; 4NDO A; 1YBD A; 4F6T B; 2J4K A; 2J5V A; 2IJ9 A; 4NDP B; 3UAI A; 3LWR A; 4I49 A; 4F6T A; 3M4X A; 1K8W A; 4NDP A; 2CWW A; 3C20 A; 3L86 A; 3LL9 A; 4AB7 A; 4DMG A; 3T7B A; 2JJX A; 1WK2 A; 2BRX A; 3ZZH A; 2BMU A; 3ZZG A; 2RD5 A; 1IT7 A; 4NDR B; 4Q1T A; 3M6X A; 2JI5 A; 4OLC A; 1IT8 A; 3M6W A; 2J5T A; 4NDR A; 3QVF A; 1R3F A; 1WXW A; 1OH9 A; 2AS0 A; 2HMF A; 3AB4 A; 3ZZI A; 2AUS A; 4JZ7 A; 4A7X A; 2BND A; 3M6V A; 2J4L A; 1J2B A; 3MQK A; 3HJW A; 1ZE1 A; 3HJY A; 2RFK A; 2KKU A; 2R98 A; 1ZBO A; 2BTY A; 3VSE A; 1GSJ A; 3WWM A; 2V4Y A; 3LWV A; 2A1F A; 2AKO A; 4A7W A; 4NDQ B; 1GS5 A; 2WE5 A; 4NDQ A; 1OHB A; 4JZ9 A; 3QUR A; 3D2M A; 1Q7H A; 3L76 A; 3TVI A; 1SQW A; 3S6G A; 2ANE A; 2EY4 A; 3LWP A; 4CI1 B; 3C1N A; 3ZV0 C; 2BNF A; #chains in the Genus database with same CATH homology 2V5H A; 2VA1 A; 3C1M A; 4AXS A; 4USJ A; 1OHA A; 2BUF A; 2P38 A; 1SGV A; 2X2W A; 1T5Y A; 2BNE A; 3D79 A; 3B8G A; 3D2P A; 1Z9D A; 1ZS7 A; 2R8V A; 3EK5 A; 3EK6 A; 1R3E A; 3QVH A; 2JJ4 A; 3K52 A; 2Q07 A; 3NWY A; 3D41 A; 3LDF A; 2J0W A; 2CX0 A; 2WE4 A; 3K4Y A; 3AAW A; 2W21 A; 2OGX B; 2OGX A; 2AB4 A; 2J0X A; 3LL5 A; 1B7B A; 2E9Y A; 1WXX A; 2BRI A; 3U6U A; 4KZT A; 3WWN A; 2WXB A; 2CX1 A; 1ZE2 A; 3LKK A; 3AB2 A; 2B78 A; 1IQ8 A; 2J4J A; 3S6H A; 3D40 A; 1E19 A; 3C0K A; 3K4O A; 3K56 A; 3KZF A; 3S6K A; 3QUO A; 1ZL3 A; 4JZ8 A; 3ZZF A; 2AP9 A; 4NDO B; 2CDQ A; 3QUN A; 4NDO A; 1YBD A; 4F6T B; 2J4K A; 2J5V A; 2IJ9 A; 4NDP B; 3UAI A; 4F6T A; 4I49 A; 1K8W A; 4NDP A; 2CWW A; 3C20 A; 3L86 A; 3LL9 A; 4AB7 A; 4DMG A; 3T7B A; 2JJX A; 2BRX A; 3ZZH A; 2BMU A; 3ZZG A; 2RD5 A; 1IT7 A; 4NDR B; 4Q1T A; 2JI5 A; 4OLC A; 1IT8 A; 4NDR A; 2J5T A; 3QVF A; 1R3F A; 1WXW A; 1OH9 A; 2AS0 A; 2HMF A; 3AB4 A; 3ZZI A; 4A7X A; 4JZ7 A; 2BND A; 2J4L A; 1J2B A; 1ZE1 A; 2R98 A; 2BTY A; 3VSE A; 1GSJ A; 3WWM A; 2V4Y A; 2A1F A; 2AKO A; 4A7W A; 4NDQ B; 1GS5 A; 2WE5 A; 4NDQ A; 1OHB A; 4JZ9 A; 3QUR A; 3D2M A; 1Q7H A; 3L76 A; 3TVI A; 1SQW A; 3S6G A; 3C1N A; 2BNF A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
