The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
206
|
sequence length |
577
|
structure length |
577
|
Chain Sequence |
KMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQMVVEPKELEKMGFEIIITNSYIIYKDEELRRKALELGIHRMLDYNGIIEVDSGSFQLMKYGSIEVSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAVKELEITLSRAREAEEIKEIPMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMALRPDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYMTPEGTKRLDELDYFPCSCPVCSKYTPQELREMPKEERTRLLALHNLWVIKEEIKRVKQAIKEGELWRLVDERARSHPKLYSAYKRLLEHYTFLEEFEPITKKSALFKISNESLRWPVVRRAKERAKSINERFGELVEHPIFGRVSRYLSLTYPFAQSEAEDDFKIEKPTKEDAIKYVMAIAEYQFGEGASRAFDDAKVELSKTGMPRQVKVNGKRLATVRADDGLLTLGIEGAKRLHRVLPYPRMRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLATGQALLSGREMIVFQYGRAVKVRKGVE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of archaeosine tRNA-guanine transglycosylase.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Pyrococcus horikoshii
|
| molecule keywords |
ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE
|
| total genus |
206
|
| structure length |
577
|
| sequence length |
577
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
2.4.2.48: tRNA-guanine(15) transglycosylase. |
| pdb deposition date | 2001-07-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01472 | PUA | PUA domain |
| A | PF01702 | TGT | Queuine tRNA-ribosyltransferase |
| A | PF14809 | TGT_C1 | C1 domain of tRNA-guanine transglycosylase dimerisation |
| A | PF14810 | TGT_C2 | Patch-forming domain C2 of tRNA-guanine transglycosylase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 | PUA domain | ||
| Alpha Beta | Roll | Nuclear Transport Factor 2; Chain: A, | Nuclear Transport Factor 2; Chain: A, | ||
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Queuine tRNA-ribosyltransferase-like | ||
| Alpha Beta | Alpha-Beta Complex | Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 2 | Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 2 |
